AMCG00017030 (trappc6b,LOC107572779)


Basic Information

Item Value
gene id AMCG00017030
gene name trappc6b,LOC107572779
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42511057 ~ 42514614 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017030
CCCGTATACATTGCTGGCATAGAGGACTATAGTATGAAAACACTACACTGCATGTTACGGTAGatgtattgaaaatgtcaaCAAATAGCAATGTTTTCTGCGAGCTGATTCGCGGCTGTTTAAGCAGATGTTAAATACACCGCGACctatttctgtgcatttttcttttaaataactgatCGCAGGTGTGTTTATTATACTGTACAGTGACTGAGATGGGGTTATTCGATGTGTTGTTGTAGCGACGCTGGTGACAATAACACATTTCCAACATTACGGTGCTGTGAAGTGTAATATATAGTTATTCTTCCTGACAGCTGGATTAGACCACTTATTACCgagtcattatttatttagctgcAGTCGGTTTTGGTTTGAACGAGAATGGCGGATGAAGCCCTGTTTCAGTTCCTGCATAATGAGCTGATTCAATATGTGTACAAGTCGGCTGAGCAAGGTGAAATGgaaAATGGGAGGTGTATTACAAGACTGGAAAACATGGGCTTTAGAGTCGGGCAAGGATTAATAGAAAGGTTCACCAAAGACACAGCCCGGTTCAAAGATGAGCTGGATGTCATGAAATTCATCTGTAAAGATTTCTGGaccagtgtttttaaaaagcaaattgaTAACTTAAGAACCAACCACCAGGGGATTTACGTGCTCCAGGACAACAAGTTTCGTTTGCTGACACAGATGTCTGCGGGGAAACAGTATTTAGAACATGCACCTAAGTATTTGGCTTTTACCTGTGGGCTGGTCAGAGGAGGATTGTCGAATCTAGGTGTAAAAAGTATTGTCACAGCCGAAGTCTCCGTAATGCCTGCCTGTAAGTATGCTCATTTGAtcaacatttcatttacattttgtagcCATCTTAAAACTAGTCCAAGGGGAAATCACCCAGGAAATATATTGGAGTCTGCAGTGTCGTTGGTTAAGCAATCACCCTTTCCCAACTTTGACTTTAAATTCAGGTGTTCCTTGCTCTGGTCTTggaatgaatggatgaatgaataaataaccacATACTAATAATATTTGAGGTCAAATCTCGTCATTCTTCGTTCATCAATTTTAGGTTATCAGTTAGGCCTACTTCCAAAGATGCTTAAAACCTATTATTTCAGGAATCAATATTAATTTGGTGAATATCTCTCTTTTGTTCTCTTTAAGGCAAATTTCAAGTTATGATCCAGAAGATGTAGAAGAGGATCGCTGGAAGAACCCTTACTTTGATTTCATTGCCTTTTAACTGTATGATCTCTCCCTCGCATTCAGGATCTTTATTTAATGTCAGGTATTTTTCACATCAACCATAACTGCCTTTATTCACCGGTCTgattatgtttaaattaatttgcaccAACCTTAATAAAGGACC

Function

symbol description
trappc6b Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within Golgi vesicle transport; nervous system development; and regulation of GTPase activity. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of TRAPP complex. Predicted to be active in cis-Golgi network and trans-Golgi network. Is expressed in central nervous system. Used to study syndromic intellectual disability. Orthologous to human TRAPPC6B (trafficking protein particle complex subunit 6B).

NR:

description
PREDICTED: trafficking protein particle complex subunit 6B

GO: NA

KEGG:

id description
K20304 TRAPPC6, TRS33; trafficking protein particle complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017030 True 1384 mRNA 0.39 5 42511057 42514614

Neighbor

gene id symbol gene type direction distance location
AMCG00017016 dennd6a coding downstream 502708 41971193 ~ 42008349 (-)
AMCG00017015 LOC108431611,LOC107680528,LOC107747489,LOC107597170,LOC108254969,LOC107559620 coding downstream 541410 41957610 ~ 41969647 (-)
AMCG00017013 rps23,rs23,LOC106566095,LOC107680479 coding downstream 569448 41939367 ~ 41941609 (-)
AMCG00017012 dnah12 coding downstream 575349 41886980 ~ 41935708 (-)
AMCG00017005 NA coding downstream 625201 41877616 ~ 41885856 (-)
AMCG00017036 NA coding upstream 152098 42666712 ~ 42670113 (-)
AMCG00017041 NA coding upstream 173885 42688499 ~ 42712888 (-)
AMCG00017040 NA coding upstream 207258 42721872 ~ 42737952 (-)
AMCG00017048 NA coding upstream 295162 42809776 ~ 42815644 (-)
AMCG00017047 NA coding upstream 301786 42816400 ~ 42820740 (-)
G17505 NA non-coding downstream 905662 41601924 ~ 41605395 (-)
G17423 NA non-coding downstream 1265832 41244926 ~ 41245225 (-)
G17414 NA non-coding downstream 1632992 40873372 ~ 40878065 (-)
G17384 NA non-coding downstream 2226234 40280538 ~ 40284823 (-)
G17383 NA non-coding downstream 2244796 40264597 ~ 40266261 (-)
G17755 NA non-coding upstream 29746 42544360 ~ 42549418 (-)
G17754 NA non-coding upstream 35711 42550325 ~ 42551773 (-)
G17910 NA non-coding upstream 721191 43235805 ~ 43236036 (-)
G18015 NA non-coding upstream 1118607 43633221 ~ 43633422 (-)
G18066 NA non-coding upstream 1322563 43837177 ~ 43891907 (-)
AMCG00017014 NA other downstream 572494 41936926 ~ 41938563 (-)
G17421 NA other downstream 1293826 41216651 ~ 41217231 (-)
AMCG00016959 NA other downstream 4452118 37875250 ~ 38058939 (-)
G17032 NA other downstream 4752586 37758157 ~ 37758471 (-)
AMCG00016938 NA other downstream 7112027 35395992 ~ 35399030 (-)
G17842 NA other upstream 294097 42808711 ~ 42864616 (-)
AMCG00017051 NA other upstream 434377 42948991 ~ 42974433 (-)
AMCG00017061 NA other upstream 765623 43280237 ~ 43286603 (-)
AMCG00017060 NA other upstream 791083 43305697 ~ 43308626 (-)
AMCG00017067 sumf1 other upstream 1119156 43633770 ~ 43659602 (-)

Expression


Co-expression Network