AMCG00017033 (kctd6b,kctd6,LOC107570288,LOC108436290,LOC107671957)


Basic Information

Item Value
gene id AMCG00017033
gene name kctd6b,kctd6,LOC107570288,LOC108436290,LOC107671957
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42289746 ~ 42290831 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017033
ATGTTAGACTGCCTGAGCTGTGAATACCTACACTGGGGTAGGATGCAGatGGGTGATCCGGTCACTCTGAATGTGGGCGGCCACTTCTACACCACCTCCCTGTCTACCCTGACCCGCTACCCAGACTCCATGCTGGGGGCCATGTTCCGGGGCGACTTCCCTTCTGCTCGTGATTCCCAGGGCAACTACTTCATCGACCGCGACGGGCCCCTGTTCAGGTATGTGCTCAACTTCCTGCGCACGTCCGAACTGACACTGCCCATGGACTTCAAGGAGGTTGACCTGCTGCGCAAGGAGGCCGACTTCTTCCAGATTGAGCCCCTGATCCAGTGTCTAAACGACCCCAAGCCCCTCTACCCCCTGGACACCTTTGAGCAAGTGGTGGAGCTGTCCAGCACCCGCAAGCTCTCCAAGTATTCCAACCCCGTGGCAGTCATCATCACCCAGCTCACCATCACCACCAAGGTCCACTCCCTGCTAGAGGGCATTTCCAACAACTTCACCAAGTGGAACAAGCATATGATGGACACTCGGGACTGTCAGGTGTCCTTCACCTTTGGACCATGTGACTACCACCAGGAGGTCTCCCTCAGGGTTCATCTGATGGAGTACATCACAAAGCAGGGCTTCACTATCAGGAACACCAGAGTGCACCACATGAGCGAGCGTGCCAATGAAAACACTGTGGAGCACCACTGGACTTTTTGCAGACTTGCACGAAAGACTGAAGACTGA

Function

symbol description
kctd6b Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within protein homooligomerization. Orthologous to human KCTD6 (potassium channel tetramerization domain containing 6).
kctd6 Enables ankyrin binding activity; cullin family protein binding activity; and identical protein binding activity. Involved in negative regulation of smoothened signaling pathway and ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol.

NR:

description
BTB/POZ domain-containing protein KCTD6

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG:

id description
K21916 KCTD6; BTB/POZ domain-containing protein KCTD6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017033 True 735 mRNA 0.56 2 42289746 42290831

Neighbor

gene id symbol gene type direction distance location
AMCG00017024 pdhb,LOC107721006,LOC107745408,LOC107593072,LOC107658396,LOC107586915 coding upstream 14063 42268889 ~ 42275683 (+)
AMCG00017025 NA coding upstream 22033 42246354 ~ 42267713 (+)
AMCG00017031 NA coding upstream 44717 42243601 ~ 42245029 (+)
AMCG00017020 NA coding upstream 50459 42222768 ~ 42239287 (+)
AMCG00017019 NA coding upstream 76363 42212609 ~ 42213383 (+)
AMCG00017032 NA coding downstream 19222 42310053 ~ 42311207 (+)
AMCG00017026 NA coding downstream 61240 42352071 ~ 42376935 (+)
AMCG00017027 NA coding downstream 137366 42428197 ~ 42459859 (+)
AMCG00017029 LOC106566459,LOC106572101 coding downstream 186920 42477751 ~ 42509628 (+)
AMCG00017028 usp19 coding downstream 224595 42515426 ~ 42551765 (+)
G17580 NA non-coding upstream 311080 41976395 ~ 41978666 (+)
G17518 NA non-coding upstream 546973 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 572757 41713810 ~ 41716989 (+)
G17498 NA non-coding upstream 599547 41688010 ~ 41690199 (+)
G17491 NA non-coding upstream 616393 41671378 ~ 41673353 (+)
G17882 NA non-coding downstream 762255 43053086 ~ 43112636 (+)
G17909 NA non-coding downstream 944989 43235820 ~ 43236036 (+)
G17969 NA non-coding downstream 1103462 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 1179239 43470070 ~ 43470846 (+)
G17987 LOC107575789 non-coding downstream 1209339 43500170 ~ 43500476 (+)
AMCG00016979 NA other upstream 3035256 39239073 ~ 39254490 (+)
G17193 NA other upstream 3786114 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 7085514 35158597 ~ 35204232 (+)
G16550 NA other upstream 8188883 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 8190150 34093276 ~ 34099596 (+)
G17697 NA other downstream 100466 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 1835383 44126214 ~ 44137931 (+)
G18192 NA other downstream 2363821 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 2658203 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 7081191 49372022 ~ 49382218 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021619 kctd6b coding NC_007134.7 CM002907.2 19670085 ~ 19673769 (+)