AMCG00017037 (LOC106572099,LOC106566462)


Basic Information

Item Value
gene id AMCG00017037
gene name LOC106572099,LOC106566462
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42582352 ~ 42594094 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017037
ATGGCAGTGAGCAGCGTGAAGTCCCTGTACTGGGAGGTGTTCCCCCCGATGCCCACCCGGCGAGTGTACTGCACCCCTGTTTACCACGATGGCCTACTCTACGTGGTGGGCGGCTGCAGTGAGACGGGGCTGCCCTTGGACACGGCCGAGGTGCTGGATGTTGGCTCCCAGACGTGGACAACGCTTCCTTCCTTGCCCACCGCCCGTGCTGGGGCCACTGCCGTCTCCCTGGGTAAGAATCTGCTGGTGATTGGGGGTATGGATGCGGAGCAGAGCCCCCTGTCCTCCGTGGAGGTCTACAACACTGATGAGGGCAAGTGGGAGAAGAAGGCCAACCTGGGCCAGCCTTCCATGGGCATCACCTCAGTGGAGAAAGTACAGCAAGACTTCTCGTTCGTTCGAATGGAGTCTTTTGTGAAATCGGACAAGAGAGGGTCAGCTGAGCTGGTCAGTCTGGCTACGGTGTACTGA

Function

NR:

description
PREDICTED: kelch domain-containing protein 8B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017037 True 471 mRNA 0.60 3 42582352 42594094

Neighbor

gene id symbol gene type direction distance location
AMCG00017023 NA coding upstream 20696 42553219 ~ 42561656 (+)
AMCG00017028 usp19 coding upstream 30587 42515426 ~ 42551765 (+)
AMCG00017029 LOC106566459,LOC106572101 coding upstream 72724 42477751 ~ 42509628 (+)
AMCG00017027 NA coding upstream 122493 42428197 ~ 42459859 (+)
AMCG00017026 NA coding upstream 205417 42352071 ~ 42376935 (+)
AMCG00017035 klhdc8b,LOC106572099 coding downstream 29895 42623989 ~ 42630671 (+)
AMCG00017034 klhdc8b,LOC106572099,LOC106566462 coding downstream 55760 42649854 ~ 42664428 (+)
AMCG00017038 NA coding downstream 121855 42715949 ~ 42719266 (+)
AMCG00017039 NA coding downstream 128383 42722477 ~ 42725222 (+)
AMCG00017043 NA coding downstream 164719 42758813 ~ 42793348 (+)
G17580 NA non-coding upstream 603686 41976395 ~ 41978666 (+)
G17518 NA non-coding upstream 839579 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 865363 41713810 ~ 41716989 (+)
G17498 NA non-coding upstream 892153 41688010 ~ 41690199 (+)
G17491 NA non-coding upstream 908999 41671378 ~ 41673353 (+)
G17882 NA non-coding downstream 458992 43053086 ~ 43112636 (+)
G17909 NA non-coding downstream 641726 43235820 ~ 43236036 (+)
G17969 NA non-coding downstream 800199 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 875976 43470070 ~ 43470846 (+)
G17987 LOC107575789 non-coding downstream 906076 43500170 ~ 43500476 (+)
G17697 NA other upstream 184565 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 3327862 39239073 ~ 39254490 (+)
G17193 NA other upstream 4078720 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 7378120 35158597 ~ 35204232 (+)
G16550 NA other upstream 8481489 34100315 ~ 34100863 (+)
AMCG00017078 LOC106565757 other downstream 1532120 44126214 ~ 44137931 (+)
G18192 NA other downstream 2060558 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 2354940 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 6777928 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 6808437 49402531 ~ 49403845 (+)

Expression


Co-expression Network