AMCG00017040


Basic Information

Item Value
gene id AMCG00017040
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42721872 ~ 42737952 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017040
TAAGAAGCAACAGTCGCAAGGCCTTCTTGTGTAGCTCAGTGTGGTTTGTCATTCTCATTGTgcgagaaaacaaaaaagggcaGTGGTTTAGCTTCATCTCGTCCAAATTCAAAAAGGCGTGAAACATCTTGAGTACGataaagGAGTCTCCAGACGTGctgtattgtaaaatgtgaataaCTGACGCTCAAGTGTGCTGCttcatttttattgcttcacaATGGATGTCAGAGCAAAACACAGCCTCGCGCTACTGGACCAAATCAACAAAATGAAGGAGACCGAAGAACTGACAGATGTGGTTCTGGTGTCAGAGGGGGTGAGTTTCCCCTGCCACCGTCTCATTCTGGCTGCGTTCAGCCCCTACTTCAAGGTGATGTTCACGTGCGGCCTGCAGGAGTGCAGCGAGAGGGAGGTGGGTCTACAGGACACCACGGCGGAGAGCCTGTTCGTCATCCTGAGCTACATGTATAACTCGGAGCTGCACCTCACTAACTCCAACGTCCAGTCTGTCTCCACAACTGCCTTCTTATTCCAAATGGAGGACATCTTCAAAAGCTGTCAGAAATACATGATGGACAACATGGATGCCTCCAACTGCCTAGGTGTGTATAACTACGCCAAGCTCCTGGGTGCTGAGGACCTTTCGGACCAGGCCAAGAAGTACCTGTACCAGCACTTCGCCGAGGTCTGCCTGCATGACGAGATCCTGGAGGTGGAGTCCCATCAGCTGCGGTCTCTGATCAGCTCCGACGATCTGAACGTCTCCCGGGAGGAGAGCATCCTGGATGTGGTCATGCACTGGGTAAACCACGACAGGAAGTCCCGCGAAGGACATCTCCCAGAGCTCCTGAAGCAGGTGAGACTGGTCATGGTGAGCCCAGGATTCCTCAGAGAGGCCCGGAGGAGGAACACAGCCATCCTGTGCAACTCAGAGTGCCACAACATGATCGAAAAGGCTCTGGAGGCCCAGAAGGCTGTCGTGCCCCGTGCCTTACAGCTGCGATATGGAATGGAGACCACAGACCTCCTCCTCTGCATTGGCAACAACAGCTTGGGAATTAAATCCCGTCATGGAAGTTATGCCGATTTCAGCTTCTGCTATGCTCCCACCACCAAGCGGACCTACTTCATTGCTTCCCCACGCTATGGAGAAGCGCTAGGATACGTCTGCACAGGCGTGGTGATGGAGAACAATGACATTGTGGTAGCAGGAGAGGCAGGGGCCCTCAAGCTGTCAAGACAGAAGAGCAGGAATGTGGAGATCTACAGGTACCAAGTCAAATCGGGAGGCTGCTGGGAGAAGGTGTGCGACGCTGAGTATCGAGAGATGTACGCCTTGGCCAGCCTGGGAAACAACCTATATCTCCTGGGGGGgcagatgaagatgaagaaccAGTACCTGATCACAAACTGTGTGGAGAAATTCTCCATGGAGGGCAACCAGTGGAGGAGCTCCCCTCCCCTGCCTGTGCCCCTGGCCTGCCACACTGCCGTCAGCCTCAAAAACAAGCTGTACGTCCTGGGAGGATGGACCCCCCAGACCGATCGTCCAGATGATGAACCAGACCGGCTGAGCAATCGCATGTTTCAGTTCGACCCCTTGCAGTCTAAGTGGACGGAGTGCAGAGTCATGAAATACTCCAAGTACCGCTGCAGCACAGCCGTGGTCAATGGGGAAATCTACGTCCTGGGTGGTATTGGGTGCCTTGGTGCAGACCACGGCCAGGCCAGGTATTGCCTTGACAGCGTGGAGATTTACAACCCTGACGGAGACTTCTGGAGGGATGGGCCACCCCTGCCGGCCCCGCTCCTCTCCCTGAGGACCAACAGCACCAACACTGGAGTAGTAGAGGGCAAGCTGTATGTCTGCGATCGCCACGAGGTCATTACTAAAGACATCCTGGAGCTGGACCCCTGGGAGAACCAGTGGAACGTGGTGGCTCATGGGGTCCTCATGCACGATAGCTATGATGTGTGTCTGGTGGCCAAACTCAACCCCCGGGACCTCATCCCACCCCCCTCTGACCTGCTGGAGAaGAATCAGCTGCACACGGTTTATGGCCGACTGCTCTGGAAAGATGAACATCTTCCCcaacagatctgcacagaagAGCAGAGAAATTAACAATAGCTGAACAACCCTTTAAATCTGACCCCTTTTTGGACTCCTGGAGCTCTGTGTACGAGCCTCACCCCAACTCACCCCAACTCACCCTTTCCCGAATGCTGTTCCTAAACcttaatctttaaaatgtatctcaGGAACACAGAGAGGATGTCAATACTGCAGTATCAGACTTCTCCAGGAGACTTTCGAAGTGTACCAAGGAGAAGGTGTaaacaagatttgtttttatttcaaagtaaaataattctTGTGATGTTGTTGAGGCAACATTACCACAAACACATGGAACTAATTTCCAAAAAcaggaacattaaaaataaaaataatacaagggccaaaaaaaataaaaaaaataaaagtgcacaATGTTATAATGATCCCTGACaactgccaaaataaataaatacatacataaaccaTTATTCTGATTATGAAGTCTCATCCTAATCCTAATTTTGGAACATCTAAGCAGAATACTTAAAATGAAGcttgc

Function

GO: NA

KEGG:

id description
K21912 KBTBD12; kelch repeat and BTB domain-containing protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017040 True 2624 mRNA 0.50 7 42721872 42737952

Neighbor

gene id symbol gene type direction distance location
AMCG00017041 NA coding downstream 8984 42688499 ~ 42712888 (-)
AMCG00017036 NA coding downstream 51759 42666712 ~ 42670113 (-)
AMCG00017030 trappc6b,LOC107572779 coding downstream 207258 42511057 ~ 42514614 (-)
AMCG00017016 dennd6a coding downstream 713523 41971193 ~ 42008349 (-)
AMCG00017015 LOC108431611,LOC107680528,LOC107747489,LOC107597170,LOC108254969,LOC107559620 coding downstream 752225 41957610 ~ 41969647 (-)
AMCG00017048 NA coding upstream 71824 42809776 ~ 42815644 (-)
AMCG00017047 NA coding upstream 78448 42816400 ~ 42820740 (-)
AMCG00017049 plxnd1 coding upstream 118172 42856124 ~ 42905046 (-)
AMCG00017050 tmcc1 coding upstream 181750 42919702 ~ 42936549 (-)
AMCG00017052 NA coding upstream 262874 43000826 ~ 43001932 (-)
G17754 NA non-coding downstream 170099 42550325 ~ 42551773 (-)
G17755 NA non-coding downstream 172454 42544360 ~ 42549418 (-)
G17505 NA non-coding downstream 1116477 41601924 ~ 41605395 (-)
G17423 NA non-coding downstream 1476647 41244926 ~ 41245225 (-)
G17414 NA non-coding downstream 1843807 40873372 ~ 40878065 (-)
G17910 NA non-coding upstream 497853 43235805 ~ 43236036 (-)
G18015 NA non-coding upstream 895269 43633221 ~ 43633422 (-)
G18066 NA non-coding upstream 1099225 43837177 ~ 43891907 (-)
G18101 NA non-coding upstream 1398236 44136188 ~ 44138542 (-)
G18156 NA non-coding upstream 1639045 44376997 ~ 44377221 (-)
AMCG00017014 NA other downstream 783309 41936926 ~ 41938563 (-)
G17421 NA other downstream 1504641 41216651 ~ 41217231 (-)
AMCG00016959 NA other downstream 4662933 37875250 ~ 38058939 (-)
G17032 NA other downstream 4963401 37758157 ~ 37758471 (-)
AMCG00016938 NA other downstream 7322842 35395992 ~ 35399030 (-)
G17842 NA other upstream 70759 42808711 ~ 42864616 (-)
AMCG00017051 NA other upstream 211039 42948991 ~ 42974433 (-)
AMCG00017061 NA other upstream 542285 43280237 ~ 43286603 (-)
AMCG00017060 NA other upstream 567745 43305697 ~ 43308626 (-)
AMCG00017067 sumf1 other upstream 895818 43633770 ~ 43659602 (-)

Expression


Co-expression Network