AMCG00017041


Basic Information

Item Value
gene id AMCG00017041
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42688499 ~ 42712888 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017041
ACGCTCCTGAAGTTACTGACACTCCTGCTGCATTGTCGGGTCCGGTTTGCGGGTGGGGGGCTGGGCTGGGTCGACGCGGTGCCGCTCGGCTCCACCCCTCGCTTGGGCCATGCGGGCCGGTTTGTTGTGTCGGGAGCAGCGGCGCAGACAGCGTCGAAAGAGCAGCCGGAGGATGCGTTTCAGACAGCCTGCAACAACTGCCAGGGACAAGAGAAAGCTGGCTGCCTGGAGGATCGGCCACAGACACGATTCATCTCACTCGCCGATGGTGTAGACGCCAAAACTAAGGTGGGAAGGCGCCAGCCTGAGGATGGGCAGGAGGGAAGGCGGTGACAGCAGCATGAGCGCCAGCCGCGGGACGGGGCCGTGGAGTCTGCAGGGCGTCGCTTCCTCGGACGAGGGCTCCGCGCTGGACCGCCACGGCGACCCGGACCCTGAGCGGGCGGCAGCGAGCAGGAGCCCCGCCGAGTCTCCGCGCCCCTCGGCGGTGGTGAAGAAGCACCAGCACAAACACAACCTAAAGCACAGGTACGAGGTGCTGGAGACGCTGGGCAAGGGCACCTACGGCAAGGTGAAGAAAGCGGTGGAGAGAAGGAGTGGGAGGACAGTGGCTATTAAATCGATACGGAAGGAGCACATCACTGATGACTTGGACAAGGTGCACATCCAGAGAGAGATCGAGATCATCTCCTCCCTCAAACACCCAAACATCATCCGCATCCATGAAGTGTTTGAGAGCCGGGATAAGATCGTCATCGTGATGGAGTACGCCAGCAGCGGTGAGCTGTACGATTACGTCAGCGATCAGCAAAAGCTGAACGAGACCGAAGCTCGCCACATCTTCAGGCAGATCACCTCTGCAGTGCACTACTGTCACAAGAATGGCATTGTCCACCGAGATCTCAAACTGGAGAATATTCTTCTGGACCAAGACTTCAATGTCAAGCTGGCAGATTTTGGGCTATCGAACCAGTACCAGAAGGGCCAAATGCTGCAGACATACTGTGGGAGCCCCCTGTACGCATCGCCAGAGATTGTCAATGGACTTCCCTACCAAGGCCCAGAGgtGGACTGCTGGGCTCTGGGCGTGTTGCTTTACACCATAGTGTACGGAAGCATGCCTTTCGACAGTGCTAACTACAAGACTCTGACCCAGCAAATCAGCCAGGCTAAATACAGGAAACCACAGCACCCCTCAGATGCCTGTGCGCTGATTGACTGGATGCTGACTGTGAATGTGGAGGAGCGAGCGACTGTGGAAGATATCGCCAACCACTGGTGGGTAAACTGGGGCTTTGAGGAGTCAGTGTGCGACTGTGAATCCGGCCAGGACTGCCCTTCACCTTTACTGGCCCGATACATCGACTGGCAGAACAGATGCAGTACCAGCGAGAGCCAGGGTTCTCCAGATCTTCATCTTCATTTCAGCTTCCCTCTGAAGCCCAGCACTCAAGGGACTCAGGGGCCCATGTGCCTGAAGAAATCGAAAAAGGAGAACGACATTTCTCAGCCTGCTACGTTCATTCCAAAAGGGGACATAAAGCCAAAGGGCATCCTAAAGACCAGAAGCAGCTTCAATTCTGCTTTCCTCCCTCAGAGTATAGGGGATGGACTTTCACAGCTCACTATCCCAAGACACAGACGTCAAGCATCGCTGCTTCCTCCCAGCCCTAAGACCCTGCCTACATCTTGTCAGCCCACGTCCAAAATGCCAAAGAAGGGGATCCTAAAGAACCTGCACCAGAGGGAGTCGGGGTACTCCTCTTCCCCAGAGAGGGCAGACTCGGCGGAGGGGCCTGCAGCTGGTGACATACAGCGTGGAGGGGAGGAGTGCCAGGCAGGAGGGGGAGTAGTCAGGCGGAAGAAAGGGATTCTGAAGAAGAACGGAAAGTTTTCTGCCAGCTTGGACCTGCCTGACATCCGTGACACCCTGCCGTCCCCTGAGCCCCTCCAGCAGCCTCTGATGTTCTCCAGCAGGGTCGGTGGATGCGAGACTCCCTCCCAGGATGACTcgaggcagcagcagcaggcatCAGCCCACAGCCGGCCCCCAAGCGTGATCAGCGATGACAGCCTGCTCTCCAGCGACTCTTTCGACCTCCTGGACTTGGCTGCCCAAACCAAAAGGCGCCTCTTCGCACAGAGCAGCCATCACAGCCTTTACAGCTCCGAGGAAGAGCTGGAAGACTTAGGGGACAGAGGCAAGAGGAGGGAGGGTAGGGTGGAGGTGGAGATCTCACCAGAGCAGAGGAAGGAACTCTTCCAGCAAGCTCAGGAGATCTGCGGACAATTGTAGTGTCGGACACCTGAGCATACCTGGAATGGGGTTGAAGGAGGACTGGCTTGGCCAAAGGGTGTGTGAAGAGACGTGTTGTTCATTTAAGATTTGGAAAATGTTGGAGCCTTTACACACATAAAATTGACAGAAGACTAGCAGTCAGTCTGTGGCACATCTTGAGCTGTAAGGACTTGAAATACAAGAGCTCATTACTATTTTTTTAGGTACAATTTACCAATTTACTGGCAGGGTAAGAAATCCTGACTTAACCAAGAATAGCACTTgccaatatttatttgtatttgttttgtctacAGTGTAACTGAGAGCAGCATTGTACCAATGTAAATAATCTTACAAGTGACTTGAATACACCGTTCAGGATGGCATGTTGTTTACACTGTTCTGTGCTGCAGTTTAAAGTTTAGATTGTGTGCACTGCCTAAAAATGATCTCATTACAAGGCTGGGATCAGTTTGTATTAGTGCAGATCAACCTCCCATGTGGCTTGATACAAACACTGGAAGATACAGTGAAGAAGTTCTCATGTAAAATAACCCACACTGAATAATACGAGGATTATGGCACTTTTCTCACAATTTTTGAATCTATTTTTACCATCTATGCTTCTTTTTCCAGTTATAGTCCTGTGGTATTCACTTGGAGAGGAGACCAAAAGTGACTTATAAACAAACtctataaaaaaagaaatgtgcaaaGAGGAAGGTtatatgatgattattaatttatttggataATCTACAGTATCTGTGACATTTTAGCATTGGTTCTTAAGCATGCAAGAGTCATGAAATGGAATCACAGAAGTTCTGCATGCCAATTGGTGCTTCCTGAGGTAGTAAACAAATCTTTCCCTTGCCCCTTGGTTTATGCCAgtcaccaacaccaacaccttTCAATTTACCAACTTGTCAAAGAAATCCCTAATTTGTGAAGGATATTTGCCTCTGTGGGTTTAAAGTTATAAGGGTTtgatacatttatgtatttatttttttactgaaaacaacaacacaaacaagacGTATTGCTTCAGATGACAGTAACAAAAGACTTGAGAACTATACCGTGATGACAACATGACTGAAGGGTATTAGGCCTAATATGGGAGGGCAACGATGATTACGAACAGtgttaatgtgtatattttgttttgttacaaataaatattttatttcagtgtttggtACTGTAGATTGgtgaaacaataaagaaaacatgtttgttaaaCTTTCTACTGTAAAAGTCAATAACTGaggagctgtttttttgttcatgcAGGATTAATGTGGGATTACTGTCAAGGAGCTGAAGTCATTTTAACaccacagaaatgtgtttata

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017041 True 3643 mRNA 0.50 8 42688499 42712888

Neighbor

gene id symbol gene type direction distance location
AMCG00017036 NA coding downstream 18386 42666712 ~ 42670113 (-)
AMCG00017030 trappc6b,LOC107572779 coding downstream 173885 42511057 ~ 42514614 (-)
AMCG00017016 dennd6a coding downstream 680150 41971193 ~ 42008349 (-)
AMCG00017015 LOC108431611,LOC107680528,LOC107747489,LOC107597170,LOC108254969,LOC107559620 coding downstream 718852 41957610 ~ 41969647 (-)
AMCG00017013 rps23,rs23,LOC106566095,LOC107680479 coding downstream 746890 41939367 ~ 41941609 (-)
AMCG00017040 NA coding upstream 8984 42721872 ~ 42737952 (-)
AMCG00017048 NA coding upstream 96888 42809776 ~ 42815644 (-)
AMCG00017047 NA coding upstream 103512 42816400 ~ 42820740 (-)
AMCG00017049 plxnd1 coding upstream 143236 42856124 ~ 42905046 (-)
AMCG00017050 tmcc1 coding upstream 206814 42919702 ~ 42936549 (-)
G17754 NA non-coding downstream 136726 42550325 ~ 42551773 (-)
G17755 NA non-coding downstream 139081 42544360 ~ 42549418 (-)
G17505 NA non-coding downstream 1083104 41601924 ~ 41605395 (-)
G17423 NA non-coding downstream 1443274 41244926 ~ 41245225 (-)
G17414 NA non-coding downstream 1810434 40873372 ~ 40878065 (-)
G17910 NA non-coding upstream 522917 43235805 ~ 43236036 (-)
G18015 NA non-coding upstream 920333 43633221 ~ 43633422 (-)
G18066 NA non-coding upstream 1124289 43837177 ~ 43891907 (-)
G18101 NA non-coding upstream 1423300 44136188 ~ 44138542 (-)
G18156 NA non-coding upstream 1664109 44376997 ~ 44377221 (-)
AMCG00017014 NA other downstream 749936 41936926 ~ 41938563 (-)
G17421 NA other downstream 1471268 41216651 ~ 41217231 (-)
AMCG00016959 NA other downstream 4629560 37875250 ~ 38058939 (-)
G17032 NA other downstream 4930028 37758157 ~ 37758471 (-)
AMCG00016938 NA other downstream 7289469 35395992 ~ 35399030 (-)
G17842 NA other upstream 95823 42808711 ~ 42864616 (-)
AMCG00017051 NA other upstream 236103 42948991 ~ 42974433 (-)
AMCG00017061 NA other upstream 567349 43280237 ~ 43286603 (-)
AMCG00017060 NA other upstream 592809 43305697 ~ 43308626 (-)
AMCG00017067 sumf1 other upstream 920882 43633770 ~ 43659602 (-)

Expression


Co-expression Network