AMCG00017044


Basic Information

Item Value
gene id AMCG00017044
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42796198 ~ 42809702 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017044
CTGAAAGGCATCTGGCAGAAGCACGACAACAAAAGAAGCCGACAATGTTGTTATGAAAGGATCTCAAGAGTCAGTCTCGTAAAACGAGAGGCAGGGGCACTTCCTGTAAGATGAAAGGAGTTATATAACTTTAGCACATGGAGTGTGTTCACGGTGGAAACAAtcgttttattaatacattttaatgcacttAACTTCCTGAACCCAGTAACTAACCAGTATGGCCAAGAAGCGCAAAGGGTCTGTTGATATTCCAGCGAAAACAGATACTAAGAGATCTAAGCAAGTCACAAAGGGGACAGCAGTCAAAAAGCCTGGAAAGAAGCGTTTAGAAGATGCAGGCACTGAGGGGGACACACCtgccaagaagaagaaaatcaaCTCGAAGGTATCCGAAACTGGCAACACACCTCCAAAGCAGAGCAGAAAATACTTCAGGGACCGCAAGGGAGTCAAAGCAGAGGTGAAAGAAGAGCCTGTGGATATAAAAGATGACCACTATAGCGGTAACACAAGGCAGGAGCAGTGCACACAGGAGGACAGGGCCTGGGCCGGGCTGCAGGGTGAGGGAGCCGCTGtaaagaaggaggaggaagaggatgacAGTGATGAAGAGTGGGAGGATGTGGAAGAGCTGAGTGAGCCTGTGGGCTCTGCCTCGAGCCTCCCTGAGCCCGTTCTGCCCTCCCAGCCCGTGGAGATCGAGATTGAGACGCCAGAGCAAGCCAAGAAGAGGCAGAGGAGggagaagagagaggccGAGTTTGAGACTTATCTTCGCCGCATGATGAACCGCTTCAATAAGGATGTCATCGTAGACACCCACAAAGTCCATCTCCTGTGTCTGCTGGGCAATGGCTTCTATCGCAATCGGCTGTGCAGTGAGTCGGATCTCCAGGCCATGGCCCTGTCTGTGCTTCCAGATCACCTCTCCTCAATGACCCCGGAAAAGGCAGACATCATGTTCCTGGCCAACCTGGTCAAGTGGTTCGCGTCAACCTTCACCCTGAACCCAGATCTGTCCTATGATGAGAGCGAGAGCCGGCAGTCTGTCCTGGAGCGGAGATTCGGCATGTTCTCTGCCCGAGACCACGAGGAAATGACCCATCTGTTCCTGATTATTTTGCGGGCATTGCAGCTGTTTTGCCGCCTTGTGCTTTCCCTCCAGCCCATTCATCTGAGAGGACCCCCCAGAAAGGGCAAGCCCAGGACTTCGAGCAGTGCTTCTCTGGAGAGCCAGAAATCAGAAGGGAAAACCAAGAAGAGAGGCAAGAAGACGCAGGCTGTGGAGACTGTGCCCGAGGATGAGAACAACAACGACGAGACAAAGGACTGCCCTGCCGGAACAAAGAGACCTGCTGGCGGGAGGGCCAGGATGGGCAAAGGGACAAAGAAACGCAAAGCAGGACAAGATGTTGGTAGCGACTGCAGTGAAAAGCAGGAAATGAGGAGGGAAGGTTTACAGAAGCCCAAAAATGACCGGCGTCGGAGGGTGGCCTCCAAAGTCTCCTACAAGGAAGACAGCGAAGGCGAAGACGACAGTGCCTCCGAGTTCGAACTCTCGGGCGAGGAGGACAGCAGTGATTCTGAGGGGGAAGAGGGAGGAGGGCGGAGGAGGTCAAAGGGTAAGGGCCAGGCATCAGCATCTCAGACAAAGAACTCGGTCCAGAAGAGCCAAGCAGGGAAGAGTCAAAAAAAGAGAAGTGGCAAGACCTTGGCGCAGAAGCAGACAGAGACCTTGAGCAGTGGGGACGAGGATGTCAAGGTGATTGGAGTGATGGGCGTCAAGGGCTCAGACCAGTGGCTAGAGGTCTACCTGGAAAAGGTGGGGAAGTGGGTATGCCTGGACTGTGTGAAGCCCAGTGTGGGCCAGCTGCAGCACTGCTACAAGCAGGCCACCAAGCCCGTGACGTACATCATTGGCATTGACAATGATGGCTTTGTCAAGGACCTCACCAAAAGGTATGACCCAGCCTGGATGACCAACACCAGGAAACGCAGGGTGGATGTGGAATGGTGGGAGGAGACCCTGCTCACCTACAGGAGCCCCTTCACTGAGCGGGAGAAGAAAGAGGACATTGAGCTCCAGGCCAAGCTCCTGGACCAGCCCTTGCCAACTGCCATCTCTGAATACAAAAACCACCCCTTGTATGCTCTCAAGAGACATCTCCTGAAGTATGAAGCCATTTACCCTTCGACTGCGGCCACGCTAGGGTACTGCCGAGGGGAGGCGGTCTATTCCAGGGACTGTGTGCACACGCTGCACTCCAAAGACACCTGGCTCAAAGAGGCGAGGGTGGTGCGGCTTGGCGAGGTTCCCTACAAGATGGTCAAGGGGTTTTCCAATCGCGCCCGCAAGGCCCGCATCCTTGATGCTGAGAACCGGAACAAAGACGACCTGCCGCTGTTCGGCCGCTGGCAGACCGAGGAGTACCAGCCTCCAGTGGCGGTGGAGGGCAAGGTCCCCCGCAATGACTATGGCAATGTGTACCTGTTCCGGCCCTGCATGTTGCCCATTGGCTGTGTGCACATGAGGGTCCCCAATCTCCATCGGGTAGCTCGCAAACTGGGCATCGACTGCGCGCCCGCAGTCACCGGCTTCGACTTCCACTGTGGCTTCTCGCACCCCGTCGTGGAGGGCTATATAGTATGTGAAGAGTACCAAGAAGTTCTCATGGCTGCCTGGGAGAATGAGCAGGCGGACAtagagaagaaagagagagagAAACGGGAGAAGAAAGTCCTGGCGAACTGGAAGCTACTGGTGAAGGGGCTGTTAATACGAGAGCGACTGAAGCGCCGCTATGGGCAGCAGAGCACCGAGATGCACATTGGAGAGGGAGACGGGTTCTCCtccgaagaagaagaagataaagaaaaagaagcGGCCACTGGCTCTCCGACAGTAGCAACTGACCTGACTCACTCCTGGCCGCAGAACAGACAGGCCGGCCCGGAagaggggaaggaggaggggaagaTCGTGCGGAAATCCAAGCGGGAGAGAAGAGGCCAGCAGAAGCATCTCTTCCCCTTTGAGAAGACCTGAAGAGCAGGTACTCCTCACAGACCTGACTTCTTCTTCAAACATGAACACAGTAATTTTAAGCCATTTTCTAATCTGTTGATAGAGGCACTTCGAGAATTATGTTCAAACAAAAGTGTTGTAATTCTGTAATtctgaaaagtattttattcttattttttcctgtgGTTTGGCCAGAGAAATGGGGGGTGGAGTAGTCTAGCCCATTTCTGCTGCACCTGTTCTTGCCTCCACATGCCAAGAGGAGATCTTACTTCTGAGTTTTACTCCTAATAATGACTAATAATGATTAGTTACTGAGAAATCCCCACACCACAACAATATTCCAGCTACTGGGACGGATTCTGGATTTCTACCACTTCTATAAACCAGACCTGTTCTGAATGGTGCCAAGCGTCCCCACCACACTGTATAACACTATTGGGAATTCTGataattgaatgaaaaacatACTGTGCTTCCACATGCAGCTCCAGCATCAGCTATAATTCACGATAGTTGCAGGAGGAACTTCTTTTCCATATATCTCCCAGATCTGAAACGACACCGAATACCTCAGCTTTCTTACCTTGAGATGCTGACCTTGTAGTCTGAATTGACTAAACAAGGCAGAAATGTTCCTGCAGatctacatatttttttcttgtgattATTGCTTTTGTATTGGTAAGATGTAATTTTTTGTAGAAATATGATTGTGTAGCTGAACTTAAaactcaaaaaaataaagtcttgTTTCTAAAACGTAAgtgaaataatta

Function

GO: NA

KEGG:

id description
K10838 XPC; xeroderma pigmentosum group C-complementing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017044 True 3807 mRNA 0.51 16 42796198 42809702

Neighbor

gene id symbol gene type direction distance location
AMCG00017043 NA coding upstream 2850 42758813 ~ 42793348 (+)
AMCG00017039 NA coding upstream 70976 42722477 ~ 42725222 (+)
AMCG00017038 NA coding upstream 76932 42715949 ~ 42719266 (+)
AMCG00017034 klhdc8b,LOC106572099,LOC106566462 coding upstream 131770 42649854 ~ 42664428 (+)
AMCG00017035 klhdc8b,LOC106572099 coding upstream 165527 42623989 ~ 42630671 (+)
AMCG00017046 ift122 coding downstream 11090 42820792 ~ 42844311 (+)
AMCG00017045 NA coding downstream 36003 42845705 ~ 42849666 (+)
AMCG00017042 NA coding downstream 41017 42850719 ~ 42852294 (+)
AMCG00017053 NA coding downstream 285936 43095638 ~ 43097515 (+)
AMCG00017054 NA coding downstream 308516 43118218 ~ 43124403 (+)
G17580 NA non-coding upstream 817532 41976395 ~ 41978666 (+)
G17518 NA non-coding upstream 1053425 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 1079209 41713810 ~ 41716989 (+)
G17498 NA non-coding upstream 1105999 41688010 ~ 41690199 (+)
G17491 NA non-coding upstream 1122845 41671378 ~ 41673353 (+)
G17882 NA non-coding downstream 243384 43053086 ~ 43112636 (+)
G17909 NA non-coding downstream 426118 43235820 ~ 43236036 (+)
G17969 NA non-coding downstream 584591 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 660368 43470070 ~ 43470846 (+)
G17987 LOC107575789 non-coding downstream 690468 43500170 ~ 43500476 (+)
G17697 NA other upstream 398411 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 3541708 39239073 ~ 39254490 (+)
G17193 NA other upstream 4292566 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 7591966 35158597 ~ 35204232 (+)
G16550 NA other upstream 8695335 34100315 ~ 34100863 (+)
AMCG00017078 LOC106565757 other downstream 1316512 44126214 ~ 44137931 (+)
G18192 NA other downstream 1844950 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 2139332 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 6562320 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 6592829 49402531 ~ 49403845 (+)

Expression


Co-expression Network