Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00017045 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 42845705 ~ 42849666 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0007602 | phototransduction | biological_process |
| GO:0018298 | protein-chromophore linkage | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0009881 | photoreceptor activity | molecular_function |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00017045 | True | 981 | mRNA | 0.57 | 5 | 42845705 | 42849666 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00017046 | ift122 | coding | upstream | 1394 | 42820792 ~ 42844311 (+) |
| AMCG00017044 | NA | coding | upstream | 36003 | 42796198 ~ 42809702 (+) |
| AMCG00017043 | NA | coding | upstream | 52357 | 42758813 ~ 42793348 (+) |
| AMCG00017039 | NA | coding | upstream | 120483 | 42722477 ~ 42725222 (+) |
| AMCG00017038 | NA | coding | upstream | 126439 | 42715949 ~ 42719266 (+) |
| AMCG00017042 | NA | coding | downstream | 1053 | 42850719 ~ 42852294 (+) |
| AMCG00017053 | NA | coding | downstream | 245972 | 43095638 ~ 43097515 (+) |
| AMCG00017054 | NA | coding | downstream | 268552 | 43118218 ~ 43124403 (+) |
| AMCG00017056 | NA | coding | downstream | 459029 | 43308695 ~ 43314951 (+) |
| AMCG00017055 | NA | coding | downstream | 468024 | 43317690 ~ 43319313 (+) |
| G17580 | NA | non-coding | upstream | 867039 | 41976395 ~ 41978666 (+) |
| G17518 | NA | non-coding | upstream | 1102932 | 41742350 ~ 41742773 (+) |
| G17514 | NA | non-coding | upstream | 1128716 | 41713810 ~ 41716989 (+) |
| G17498 | NA | non-coding | upstream | 1155506 | 41688010 ~ 41690199 (+) |
| G17491 | NA | non-coding | upstream | 1172352 | 41671378 ~ 41673353 (+) |
| G17882 | NA | non-coding | downstream | 203420 | 43053086 ~ 43112636 (+) |
| G17909 | NA | non-coding | downstream | 386154 | 43235820 ~ 43236036 (+) |
| G17969 | NA | non-coding | downstream | 544627 | 43394293 ~ 43394499 (+) |
| G17988 | NA | non-coding | downstream | 620404 | 43470070 ~ 43470846 (+) |
| G17987 | LOC107575789 | non-coding | downstream | 650504 | 43500170 ~ 43500476 (+) |
| G17697 | NA | other | upstream | 447918 | 42391297 ~ 42397787 (+) |
| AMCG00016979 | NA | other | upstream | 3591215 | 39239073 ~ 39254490 (+) |
| G17193 | NA | other | upstream | 4342073 | 38496051 ~ 38503632 (+) |
| AMCG00016934 | acly,aclya,LOC103369716,LOC108273769 | other | upstream | 7641473 | 35158597 ~ 35204232 (+) |
| G16550 | NA | other | upstream | 8744842 | 34100315 ~ 34100863 (+) |
| AMCG00017078 | LOC106565757 | other | downstream | 1276548 | 44126214 ~ 44137931 (+) |
| G18192 | NA | other | downstream | 1804986 | 44654652 ~ 44656098 (+) |
| AMCG00017099 | cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 | other | downstream | 2099368 | 44949034 ~ 44961601 (+) |
| AMCG00017167 | NA | other | downstream | 6522356 | 49372022 ~ 49382218 (+) |
| AMCG00017173 | NA | other | downstream | 6552865 | 49402531 ~ 49403845 (+) |
