AMCG00017046 (ift122)


Basic Information

Item Value
gene id AMCG00017046
gene name ift122
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42820792 ~ 42844311 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017046
GCGTGCTGTGCTGCTTGGTGTCAACACTGCTGTAGTAACTGAAAACAATCCCGCTGGGCTCAGATTAGTTGGAGCAGGATATtgtataatatatgaatatatctatatatttgaaACGAACAGAATGAGAGCCGTTCCGACATGGATCGACAAAGTGCACGACCGGGATAAGGTGGAGCAATGTATTTATGACCTCGCCTTTAAACCCGATGGGAGTCAACTTATAGTTGCAGCTGGAAACAGAGTTCTGGTGTATGACACAGCAGATGGGACTCTCATTCAGCCTCTGAAAGGACATAAAGACACAGTGTATTGTGTAGCTTATGCCAAAGATGgcaaGCGCTTTGCTTCTGGGTCTGCTGACAAAAGTATCATCATTTGGACTTCCAAACTGGAGGGCATTTTGAAGTACACGCACAATGACTCCATTCAGTGTGTGTCATATAATCCAGTTACACACCAGCTGGCATCATGCTCTTCTGGTGACTTTGGTTTATGGTCCCCAGAGCAGAAATCTGTCTCCAAGCACAAAGTGAGCAGTAAAATCACATGTTGTGGGTGGACCAACGATGGGCAATACCTTGCTTTGGGTATGCAGAACGGAGTGGTGAGCATCCGCAATAAAAACGGCGAGGAGAAAGTGAAGATTGAGCGCCCTGGAGGGTCCTTGTCAACCATCTGGTCCATCGCCTGGAACCCGTCCAAAGATGAACACAATGATATTTTGGCAGTGGCAGACTGGGGACAGAAGCTATCTTTCTATCAACTTAGTGGGAAACAGATTGGAAAAGACAGGGCCCTGAATTTCGATCCTTGCTGCGTCAGCTATTTCTCCAAAGGAGAGTATATTGTCATGGGGGGCTCAGACAAGCAGGCCTCTCTTTACACCAAAGACGGAGTTCGTTTGGGCACCATTGGAGAACAGAATTCCTGGGTCTGGTCCTGCAGAGTCAAGCCTGAGTCCAACTACGTGGTGGTTGGTTGCCAGGATGGGACCATTGCCTTTTACCAGTTGATTTTCAGTACCGTTCACGGGCTTTATAAAGACAGATATGCCTACAGGGACAGCATGACTGACGTCATTGTACAGCATCTCATCACTGAGCAGAAGGTGCGCATAAAGTGCAGGGAGCTGGTGAAGAAAATAGCAATCTACAAGAACAGGCTAGCCATCCAGCTCCCAGAGAAAATCCTCATTTATGAGCTGTACTCGGATGACTCTTCTGATATGCATTACCGAGTTAAGGAGAAGATCTGCAAGAAGTTTGAGTGCAACCTGCTGGTCGTGTGCTCACAGCATATCATCCTGTGCCAGGTGAGGTGTAGCTTCGATGTGCCTCTCGATGGGAGTGAGTTAGAGCAGGCTGTGGCAGAACTGTTAATTGTACTTTTGCAGGAAAAGAGGCTGCAGTGCCTGTCATTCAACAGTATAAAGGAGAGGGAGTGGCTCATGGAGTCTTTGATTCGGTACATCAAAaTTCTGAAGATATTTGTGGACAACCCATTTGCGATCACGCTGCTGAAACAGGCAACGTCCGTGCGCTGCCTGGACATGAGCGCCTCCAGGAACAAGCTGGCCGTCGTGGACGAGCACAACACCTGCCTGGTGTATGACATCCGCACCAAGGAGCTGCTGTTCCAGGAGCCAAATGCAAACAGCGTTGCTTGGAATACCCAGTGTGAGGACATGCTGTGTTTCTCAGGCAGTGGATACCTCAACATCAAGGCAAGCAACTTCCCAGTGCATCAGCAGAAGCTCCAGGGCTTTGTGGTGGGCTACAATGGCTCCAAGATCTTCTGTCTCCACGTCTACGCCATGTCAGCTGTGGAGGTCCCCCAGTCTGCTCCAATGTACCAGTATTTGGAGAAGAAGATGTTTAAAGAGGCCTATCAGATTGCTTGTTTGGGAGTAACCGACAGTGACTGGAGGGACCTGGCCACGGAGGCTCTTGAGGGGCTCGACTTTGAAACAGCGAAGAAGGCATTTATCCGAGTTCGGGACCTACGCTATCTGGAACTCATAAACAGCATTGAGgagaggaagaagagaggcGAAACCAACAATGAACTCTTCCTGGCGGATGTTTTTGCCTACCAGGGGAAATTCCACGAGGCGGCCAAACTGTACAAGAAGACGGGCAATGACAGCCGAGCCCTCGACATGTACACCGATCTGCGCATGTTCGAATATGCCAAGGATTTCCTCGGCTCAGGAGATCCGAAGGACACCAAGCTGCTGATTACCAAACAAGCCGACTGGGCCAAGAACATCAATGAGCCCCGCGCTGCGGCGGAGATGTACCTGTCGGCAGGGGAGCACATGAAGGCCATCGAGATCATTGGCGATCACGGCTGGGTGGACATGTTAATCGACATCGCACGCAAACTGGACAAGGCCGAGCGTGAGCCTCTCTCAAAGTGCGCCGCCTTCTTCAAAAAGCTCAAGCACCACGGCTATGCTGCTGAGACCTACGCCAAAATGGGGGACCTGAAGGCTCTGGTGTTGCTTCATGTGGATGTGTACCACTGGGAGGAGGCATTTGAGCTGCTGGAGAAGCACCCCGAGTTCAGAGATGACGTCTATGTGCCTTATGCTCAGTGGCTGGCCGAGAACGACAGGTTTGAAGAAGCTCAAAAAGCATTCCACAAGGCCGGGCGGCAGGACGAGGCTGTGAAAGTGCTGGAGCAGCTGACTCACAACGCTGTGGTGGAGAGCAGGTTTAACGACGCAGCCTATTACTACTGGATGCTATCCATGCAGTGTCTTGATATAGCCAGAGaaaatgaaagtaaGAAAGAAGAGATGCTGAAGAAATTCCACAGGTTCCAGCACTTGGCAGAGCTGTATCACGTTTACCACTCCATTCAGCGCTACACTGACGAGCCCTTCAGCTCTCATCTGCCAGAAACCCTCTTCAATATCTCCAGGTTCTTGCTGCATAACCTCACCAAGGACGTACCACTGGGCATCTCCAAAGCCAGAAACACCCTGTTCGCTTTGGCCAAGCAGAGCAAGGCCCTGGGGGCATTCAAGCTGGCCCGCCATGCCTATGAGAAGCTGCAGGGCCTTCGCATCCCGGCCCGCTTCCAGGAGTCCATCGAGCTGGGCAGCCTGACGGTGCGCTCCAAACCCTTCCACGACAGCGAGGACCTTGTCCCCATGTGCTACCGATGCTCCACAAACAACCCACTCCTAAACAATCAAGGGAACGTGTGCATCAACTGCCGGCAGCCTTTCATCTTCTCGGCGTCTTCCTATGAGGTCCTGCCCCTCATTGAATTCTACCTGGAGGAGGGCATCACTGATGAAGAGGCCGTGTCCCTCATTGACCTGGAGGCGCCGCAGACTGAGAAGAGAGGAATTAAGTGGCAGGAGATGAGCAGCGGCGAATCCCAATCTCTGAGACTGGACGACAGCATGGATGACCCCCTGGAGGACCCATTCATGGCCAAGCTGAGCTTTGAGcaAGGTGGCTCGGAGTTCGTCCCGGTGGTGGTGAGTAAGGCGGTGCTGCGCTCCATGAGCAGGAGAGATGTGCTGATCAAGCGCTGGCCACGGCCACTCAGCTGGCAGTACTACAGGTCCCTGCTGCCCGATGTCTCCATCACCATGTGCCCCTCCTGCTTTCAGATGTTCCACAGTGAGGACTACGAACTCTTGGTCCTCCAGCACAACTGCTGTCCGTACTGTCGCAGGCCCATAGACGAGCCGAACTGAGCTCAGAACTCCAGCTCTGGGCAGAGACTTACGCtaattgtctgtctgtccttaTTTACTCAGTCATTAAAATCAATTGATTGTATATCTGGTGATTTGTCCCTGTTGGTGGCTAAGGTTCACTCTGCACACGCTACTTCAGCCGATCCGTGTAATAGGATTAAGTGGATCAGATTTCTCAGGGCTTTGGCAATAgcattttgtgacattttggagggggggggaattaattttgttgtagcttcaaaaaatgaacttttcacttcattattattatgtattattttaaagtacaagTTGCATCTGGTATATGGTTTTGGtgtatttaaagcattttttgtattattctgttgtATACTTGAACACTAATATTTATTGTATCG

Function

symbol description
ift122 Involved in animal organ development and regulation of smoothened signaling pathway. Acts upstream of or within several processes, including melanosome transport; opsin transport; and photoreceptor cell maintenance. Predicted to be located in ciliary basal body. Predicted to be part of intraciliary transport particle A. Predicted to be active in non-motile cilium. Is expressed in several structures, including nervous system; neural plate; neural rod; pronephric duct; and pronephric mesoderm. Used to study retinal degeneration. Human ortholog(s) of this gene implicated in cranioectodermal dysplasia 1. Orthologous to human IFT122 (intraflagellar transport 122).

NR:

description
PREDICTED: intraflagellar transport protein 122 homolog isoform X4

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0010172 embryonic body morphogenesis biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0045879 negative regulation of smoothened signaling pathway biological_process
GO:0072001 renal system development biological_process
GO:0060271 cilium assembly biological_process
GO:0035721 intraciliary retrograde transport biological_process
GO:0030991 intraciliary transport particle A cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K19656 IFT122; intraflagellar transport protein 122

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017046 True 4101 mRNA 0.50 29 42820792 42844311

Neighbor

gene id symbol gene type direction distance location
AMCG00017044 NA coding upstream 11090 42796198 ~ 42809702 (+)
AMCG00017043 NA coding upstream 27444 42758813 ~ 42793348 (+)
AMCG00017039 NA coding upstream 95570 42722477 ~ 42725222 (+)
AMCG00017038 NA coding upstream 101526 42715949 ~ 42719266 (+)
AMCG00017034 klhdc8b,LOC106572099,LOC106566462 coding upstream 156364 42649854 ~ 42664428 (+)
AMCG00017045 NA coding downstream 1394 42845705 ~ 42849666 (+)
AMCG00017042 NA coding downstream 6408 42850719 ~ 42852294 (+)
AMCG00017053 NA coding downstream 251327 43095638 ~ 43097515 (+)
AMCG00017054 NA coding downstream 273907 43118218 ~ 43124403 (+)
AMCG00017056 NA coding downstream 464384 43308695 ~ 43314951 (+)
G17580 NA non-coding upstream 842126 41976395 ~ 41978666 (+)
G17518 NA non-coding upstream 1078019 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 1103803 41713810 ~ 41716989 (+)
G17498 NA non-coding upstream 1130593 41688010 ~ 41690199 (+)
G17491 NA non-coding upstream 1147439 41671378 ~ 41673353 (+)
G17882 NA non-coding downstream 208775 43053086 ~ 43112636 (+)
G17909 NA non-coding downstream 391509 43235820 ~ 43236036 (+)
G17969 NA non-coding downstream 549982 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 625759 43470070 ~ 43470846 (+)
G17987 LOC107575789 non-coding downstream 655859 43500170 ~ 43500476 (+)
G17697 NA other upstream 423005 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 3566302 39239073 ~ 39254490 (+)
G17193 NA other upstream 4317160 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 7616560 35158597 ~ 35204232 (+)
G16550 NA other upstream 8719929 34100315 ~ 34100863 (+)
AMCG00017078 LOC106565757 other downstream 1281903 44126214 ~ 44137931 (+)
G18192 NA other downstream 1810341 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 2104723 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 6527711 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 6558220 49402531 ~ 49403845 (+)

Expression


Co-expression Network