AMCG00017047


Basic Information

Item Value
gene id AMCG00017047
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42816400 ~ 42820740 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017047
CAGGAGCTCAATACAGAAGTGTCAAGAAGAAGCAGAAGCGCATTTGTTATTGAATGATACTCTGCATACGCGGGATTTAGCGTAAATCAAGTGCGCGAATTTGCTGTTTTAAAATTAGTTGTGCAGCTGCTGAAATGTGTGCACtgatgaacatttaaaaagtctgcCGTCAATCTTAGTCCTAGTGAAATCATGATGATTGAAAAGCAGTGCATCGCATCTCACGCACAACAGGAAGAGGAGGCTGAGACTGAGCACCACAGCACCCGGCCGGGCCGCCCTGGGGTCCCGCCAGGATGGGACAAAGTGGTGAAAACCAGGAAATCGGGTAAAACCGCTGGGAAAATGGACGTTTACATCATAAGTCCACAGGGCACAAAATTCAGATCCAGATCGGCACTCCTGGTTTACCTTCAGAGCAGCAGTGACATCAATCTCAAGGCCGCTGATTTTGATTTCTCTCTGCCAAGGAGTGGTGGCATTTTACTAACACCCGATGGCAGGACCGAGAAGACCAAGCACTCAGACCATGAGGACAGAAGACAGAGTGCTAGGAATAAGCGCAGACACTCCATAAGAAGAGATGCCCCGGCAGGAATGGCGAGGGAAGGAAAGCAGCAGGAGGAGTTAGGCAACAAAACAACATCCGGTCAACAGGACAATAAACAGGTTCTTACAGGTCACATAGAAGAAAAGAGGACGGAGGAACAAAATGGAGATGTTGAAAAGGACCATATGAAACCAGAGGAACCCCAGAATGgactcttaaaaaataaactgctgaGAATAGCCCAgtccaataaaaaacacaaggcAGCAGAACTCACGATGGATCTAGAGTGTGAAAGGGTGGCAGGAAAATTGGGGCTCGACCAACCAGAGCTCTCTCTAGCTGAGAGTTGTGCCTCACAGCCTGGGAATCCAGCAGGGGGAAGCCAGGCCAGTCACACAACTGAAGTGGAGTCTGAACTGATGAATGAAGATTGTGTCTCGCTGGCTGTAGAGAGCACAGACACGTTCACATCAGTGAAACAACCGCAAAGCAGCCCTGGCATAAAGGCTCAGAttgacaaaaggaaaaaaagtcaGTACTTCACTGGGAAATCGGTCCGAGAAGCTCCAAGTCCACCCAGGCGCAAAGCTTTTAAGAAGTGGACCCCACCACGCTCGCCCTTTTCCCTGGTCCAGGAAACTCTTTTCCATGACCCCTGGAAGCTGCTGATTGCCACCATTTTCCTTAACAGAACTAGCGGTAAGATGGCGATCCCAGTGCTCTGGCAGTTTTTTGAGCGTTACCCATCTCCTGAGGTAGCCAGAGGAAGTGACGAGAAGGAAGTGGCTGAATTGCTCAAACCTCTGGGCCTGAATGAATTAAGAGCCAAAACAATCGTGAAGTTTTCAGACGAGTACCTAACAAAACAATGGAAGTACCCCATTGAGCTGCACGGGATAGGAAAATATGGCAATGACTCCTACAGGATATTCTGTGTTGAGGAGTGGAGACAGGTTGAACCCCAAGACCACAAGCTGAACAAGTACCATGCTTGGCTTACGGAGAATCAAGAACAGCTGGGGATCTGACTCAGAGACGTCAGTCATGCAGAACTAAGTTAGATCGCTACAGCTGCATTTTAGTGTTTCTTCAgctgatgtttttattgtaactaTGTGATAAAAGACTCAATTATGTCCACAACAATGGTATTGTTGCTCTCTTGTTCAGGAACTCATTAATCTATTTAATCTACACGGCCTGTGTAACTTTAAAGGAATCAGGATGTATATTTGtgcttttatatgtatatatttttgtatgaatgtgtttgttttgactatgttaaaatataattgtccaCAGGGTTTTGCATCTGGTGCtgcatcatttttaaataaaatgacttcTTActtgaaa

Function

GO: NA

KEGG:

id description
K10801 MBD4; methyl-CpG-binding domain protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017047 True 1912 mRNA 0.46 8 42816400 42820740

Neighbor

gene id symbol gene type direction distance location
AMCG00017048 NA coding downstream 756 42809776 ~ 42815644 (-)
AMCG00017040 NA coding downstream 78448 42721872 ~ 42737952 (-)
AMCG00017041 NA coding downstream 103512 42688499 ~ 42712888 (-)
AMCG00017036 NA coding downstream 146287 42666712 ~ 42670113 (-)
AMCG00017030 trappc6b,LOC107572779 coding downstream 301786 42511057 ~ 42514614 (-)
AMCG00017049 plxnd1 coding upstream 35384 42856124 ~ 42905046 (-)
AMCG00017050 tmcc1 coding upstream 98962 42919702 ~ 42936549 (-)
AMCG00017052 NA coding upstream 180086 43000826 ~ 43001932 (-)
AMCG00017063 mrps25 coding upstream 306516 43127256 ~ 43128666 (-)
AMCG00017062 nr2c2 coding upstream 310610 43131350 ~ 43155633 (-)
G17754 NA non-coding downstream 264627 42550325 ~ 42551773 (-)
G17755 NA non-coding downstream 266982 42544360 ~ 42549418 (-)
G17505 NA non-coding downstream 1211005 41601924 ~ 41605395 (-)
G17423 NA non-coding downstream 1571175 41244926 ~ 41245225 (-)
G17414 NA non-coding downstream 1938335 40873372 ~ 40878065 (-)
G17910 NA non-coding upstream 415065 43235805 ~ 43236036 (-)
G18015 NA non-coding upstream 812481 43633221 ~ 43633422 (-)
G18066 NA non-coding upstream 1016437 43837177 ~ 43891907 (-)
G18101 NA non-coding upstream 1315448 44136188 ~ 44138542 (-)
G18156 NA non-coding upstream 1556257 44376997 ~ 44377221 (-)
AMCG00017014 NA other downstream 877837 41936926 ~ 41938563 (-)
G17421 NA other downstream 1599169 41216651 ~ 41217231 (-)
AMCG00016959 NA other downstream 4757461 37875250 ~ 38058939 (-)
G17032 NA other downstream 5057929 37758157 ~ 37758471 (-)
AMCG00016938 NA other downstream 7417370 35395992 ~ 35399030 (-)
AMCG00017051 NA other upstream 128251 42948991 ~ 42974433 (-)
AMCG00017061 NA other upstream 459497 43280237 ~ 43286603 (-)
AMCG00017060 NA other upstream 484957 43305697 ~ 43308626 (-)
AMCG00017067 sumf1 other upstream 813030 43633770 ~ 43659602 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other upstream 1832715 44653455 ~ 44656905 (-)

Expression


Co-expression Network