AMCG00017048


Basic Information

Item Value
gene id AMCG00017048
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42809776 ~ 42815644 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017048
ACGAGTAGTGAGGCAATCGCGCAAACTCGAAAGCAGCAGAAGTTTGACTGAGAAACgtcaattaatttagttttccggatttttgttttagtattcgAGCACAGAAGAGGCTTTCTATGCGTGAATGCAAACCAGAAACAAGGATCGAGTCGGTTTTAACAACGTTTTCCCTAATATAGCTGGTGTAGAGTAACATTTTACTTtagcatttctgttttgtaggAATTTAAGTGCATCCAGAGGGCGGGGATATTCGCACAATGTCGGCATCTAATTATCCCGGAGGAGAGCGCAGGGAGCAGCATGTGAAAGTGGCCAGTCAAGCCAAGCCCGGGTTCCTGGAGCGGCTGGGCGAGACAACAGGGGGGATGGTGGTTGGAGTCGGGCTGTTTGCGCTGTCGTTTTACGTCCTCTTTACTAACGAGGGCCGAGCTCTGAGGACGGCATCCTCGCTGGATGAGGGTCTGTCTCTGGTGGTGCCGCTGGATAGCATCCACAGTGTCGAGCCACAAAACAACGGCAAGCTGGTACACCTGTCTGGGCCGCTGCGGACTTTCCAGCCCCTTTATGACCCCAACTACAGAATCTCCATCCACTCGGTCAAGCTGAAGAGGGAAGTGGAAATGTACCAGTGGGTGGAGTACCAAGAGAGCCGGGACTATGAAGAAAATGGGGAACGTAAGACTGAAACCACATACACCTACAATACTGAGTGGAAGTCTGAGGTGATCAACAGCAGGAATTTCGATAAGGAGATAGGCCACATCAACCCCAGtgccatGGCTGTGGAGTCGGTGACAGTGGTGGCACCTGATGTCTTGGTAGGacgcttctctctctccaaagGCCTGGTAGAGAAGATCGACAACTTCAAGAAGCTAAGTCTGGTGGGACTCCCTCCTCTGGATTTCTTTGTGACTGTACACGAGAACTACTTCTACCACACCCAAAACCCCCGGCACCCAGAGGCTAGTGCAGACGCCTTGACAGCTAATGCAACTGTGGGAGACGTGCGAGTGTCCTTCTCCTACGCTGGACTGAGCGGAGAGGGAAACTACCCCGGACCTGCGCAGGTGGTCAGCATTGTGGCTCGCCAGAAAGATGAACGGCTGGTTCCCTATCAGTCCAAGTCCGGGGACGTTCTGGAGTTCCTGTACCTTGAGGATCTGTCGGCTCAGGAGGTGTTTGAGAAGGAACATCAGAGTAACAAGCTGAAGACCTGGGCGCTGCGAGTCGGGGGCTGGCTGCTGATGTTCCTCGGGATCAGTCTGACCATCAGAATCTTCCACACCCTGGTGGACTGGCTGCCCCTGGTGCGAGATCTGGTAAGCCTGGGCCTGAAGCTGTTCGCCCTCTCTGTGGCCACCTCGCTGTCCCTGGTCACTATTGCTGCCGGCTGGCTCTTCTACCGCCCCCTGGTGGCCAGTCTGCTGGTGGCTCTGGCCCTGGTGCCAATCATACTTGCCCGTAGCAAAGCATCGCCCAAGAAGAACCAGTGAGTATACAGGGAGCAGGAGGCCGCACTGAACCAAAGAGGACAAAGCTTCCTTATTTTCTAATGGACAAACAGGGCCTcataataacttaattaaattgtacAGTGGAAAATCAGGCCCAGAATGTATAACCAAGCTGTATGTCTCTGGCAAagaatgtatgtgtgcatttcgAGTGTTTTTTAGAAATGCTACTCCAGGGAAATTGTATATTGCATGGATTTCACTCTGCTGCATGGTGTGAATACGTCTGTAGGTCTAAGGAAGCTCAGCATTAGTTAAAGCTGGGTGAAGGAAGGTTAAAATCCTTATTGACAGACATGATAGAAGCAGATAAGTCTCGCATCTTGTCTGCTTGAAGACTGAAGTTTCTCATTCAGTTCCTAAGTGTCTCTTTATCTATACTGGTCCTTTTGGAGCACTGTCATTCTGAAAGAAAACTCTTGTCAGTTATACTTGAAATTAAtctttgtgtaaaaaaataaaaatgtaatacgaCATCTTCctaaattaagtgtttttttgctCTCAAGGTACAGTTAgaattgaaatagttttatttaaaaataaatgtattgatagGAGAGgttcattgtatttttgtattgtaagtGCCTTTCACTTTGCTGTTATGTTGGTATAGGGCTTTACAGTGTGAAACACACTCACCTCATATCTTAAGTTAACTGTTGTTAACTTTGTGTGGCTCACAACAGGTAAATCCAGCTTGAAG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017048 True 2229 mRNA 0.48 12 42809776 42815644

Neighbor

gene id symbol gene type direction distance location
AMCG00017040 NA coding downstream 71824 42721872 ~ 42737952 (-)
AMCG00017041 NA coding downstream 96888 42688499 ~ 42712888 (-)
AMCG00017036 NA coding downstream 139663 42666712 ~ 42670113 (-)
AMCG00017030 trappc6b,LOC107572779 coding downstream 295162 42511057 ~ 42514614 (-)
AMCG00017016 dennd6a coding downstream 801427 41971193 ~ 42008349 (-)
AMCG00017047 NA coding upstream 756 42816400 ~ 42820740 (-)
AMCG00017049 plxnd1 coding upstream 40480 42856124 ~ 42905046 (-)
AMCG00017050 tmcc1 coding upstream 104058 42919702 ~ 42936549 (-)
AMCG00017052 NA coding upstream 185182 43000826 ~ 43001932 (-)
AMCG00017063 mrps25 coding upstream 311612 43127256 ~ 43128666 (-)
G17754 NA non-coding downstream 258003 42550325 ~ 42551773 (-)
G17755 NA non-coding downstream 260358 42544360 ~ 42549418 (-)
G17505 NA non-coding downstream 1204381 41601924 ~ 41605395 (-)
G17423 NA non-coding downstream 1564551 41244926 ~ 41245225 (-)
G17414 NA non-coding downstream 1931711 40873372 ~ 40878065 (-)
G17910 NA non-coding upstream 420161 43235805 ~ 43236036 (-)
G18015 NA non-coding upstream 817577 43633221 ~ 43633422 (-)
G18066 NA non-coding upstream 1021533 43837177 ~ 43891907 (-)
G18101 NA non-coding upstream 1320544 44136188 ~ 44138542 (-)
G18156 NA non-coding upstream 1561353 44376997 ~ 44377221 (-)
AMCG00017014 NA other downstream 871213 41936926 ~ 41938563 (-)
G17421 NA other downstream 1592545 41216651 ~ 41217231 (-)
AMCG00016959 NA other downstream 4750837 37875250 ~ 38058939 (-)
G17032 NA other downstream 5051305 37758157 ~ 37758471 (-)
AMCG00016938 NA other downstream 7410746 35395992 ~ 35399030 (-)
AMCG00017051 NA other upstream 133347 42948991 ~ 42974433 (-)
AMCG00017061 NA other upstream 464593 43280237 ~ 43286603 (-)
AMCG00017060 NA other upstream 490053 43305697 ~ 43308626 (-)
AMCG00017067 sumf1 other upstream 818126 43633770 ~ 43659602 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other upstream 1837811 44653455 ~ 44656905 (-)

Expression


Co-expression Network