AMCG00017054


Basic Information

Item Value
gene id AMCG00017054
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43118218 ~ 43124403 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017054
ATGGCATCCAGCTATCCCCCGCCGTTCGAGGAGCAGGGGGATATGAGGGAGGGTTTTCTTTGCCCCCTTTGCCTGAAGGACCTGCAGTCGTTTTACCAGCTCCAGGCCCACTATGAGGATGAGCACTCAAGTGAAGACAGGGACGTCAAGGGCCAGCTGAAAAGTCTGGTGCAGAAAGCCAAGAAAGCCAAAGACAAGTTTCTGAAACGCGATGGAGAAGACCGGGCAGAATCTGGCAGCTATGAGTCTTTCTATTATGGAGGGGTCGATCCCTATATGTGGGAGCCACAGGAATTGGGGGCAACAAGAAGTCACCTGGAAAGTTTCAAGAAACACAGAGCTGCGAGGATTGACCACTACGTCATTGAAgtcaataaattattaatcaggTTAGAAAAGCTGACATCGTTTGACAGAACCAGCATGGATGCGGCCAAAATTAGAGCCATTGAGAAGTCGGTCGTCCCGTGGGTGAGTGATCAGGACGTGCCATTCTGCCCGGACTGTGGGAACAAGTTCAACATCCGGAACAGGCGCCACCACTGCCGCCTCTGTGGGTCCATCATGTGCAAGAAGTGCATGGAGTTCGTCCCCCTCCCGCTGGCACACAAGCTGACGAGCGGCACCCGGGAGTCCCTGTGCGCGCCAGGTAGCCCCGGCCTTTCCCCTGGCAGCAGTGTGCAGGGCTCTCGCCGGGGCAGCATCAGCAGCCTAAGCAGCGTGAGCTCCGTCCTGGAGGAGAAGGACGACGACCGCATCCGCTGCTGCCGCCACTGCATGGACACCCTGCTGAAGCGCCAGCAGAAACTGGATGAGAAGGACCACGTGCCAGACATCGTCAAGCTCTATGAGAGACTGAGACTTTGCATCGAGAAAGTGGATCAGAAGGCTCCAGAATATATCAAAATGGCTGAATCCTTAAATGCTGGGGAGACTGCCTACAATTTAGAGCATGCCAATGGCCTCCGAATGGAAGTCCAGAAGTACTATGAGCTCATTGATGCGTTAAGTAAGAAGATTCTCACGTTGGGTATGAATGAGGAGCCGAAGCCTCATCCGAAGAGCCAACAGTTACAGAGGATGATCAGATACTCAGCCACACTCTTTGTTCAGgAAAAACTGCTGGGATTGATGTCCCTGCCGACAAAGGAAAAATACGAAGAGCTAAAGGAGAAGAGGAAGCAGGACATGGACAGGAAGCTGCAGCAGGAGAGACAAGCTGCCCTAGAGGCACAGAAAAGAAGATCAGAGGAAAAGCCTCGTGATCAGTCCCGCTTGGCAGCCAGCACGAATGGTGAGGCCACGCAAGCCCAGCAGCGGCCCATGACCAAAGCTGGGGGCTGGCTACCTTCCTCCAGTGTGCTGCACACCCGGGAGATCGAGGACCCCCTCCTCCAGCAGATAGACAACATCAAGTCCTTCATCCGCCAGGCCAGAGCGGCGAACCGGGTGGACGAAGTGAGCACGCTGGAGGAAAACCTCCGTCAGCTGCAGGACGAGTACGACCAGCAGCAGACCCTGCTCGCCATCCAGCTCTCCAGGAAGATGGCTGAGGAGGAGGCCGCGCAACAGGAGCAGCTCCACATCCTGCAGAGGGAAGAGTGGACGCGCGAGCAGCAGAAGACCTCGCAGCACACACGGACACGCTCCTTAGATTTTCGGGAGGTCTTATCCGTCCAGGGAGAAGATTATGGGAACCATGTCACGGAGATAGGAAGCTTAGGCGCCTCCAAGACAAAGATCAGCCCTCTATCCAAAACGCAGTCCATGAAAGCCTTCCAGCACCTGCCCAACCGGGAAAAGACACCCCTGCAACAGCGGCAGCAGCCCCGTGCCGCCCATGAACAAAACAGCAAGCCAGCTACCTCCTTAAACCCATTTGAAGATGAAGACACTACGCCCATAGAAGACGACGCCTCGAACCCATTCGCCGAAGAGATTTCAAAAGAACAGTCTGCCTCCAGAAAGGAACTACCCAACGGCAAGAAGGAATACAACCCCTTCGAGGACGGGGAGGAGACGGATTCGAGTCCGCGTAGCGAGGTCAAGGGAGCGCTGAACCCCTTCGAGGAAGAGGACGAAGGCAACACCTTCAGCGGGGCAAGAAACAGTGCCGCCACCACCCCTTTCCCTGAGAAGGCCTCCACCAATCCGTTCGACACAGACGACGACACCGCCATGGACGAAAACATAATCGAAGAGGAGTTGCTGCTCCAGCAGATCGACAACATCCGGGCGTACATTTTCGACGCCAAGCAGAGTGGACGGACAGACGAGGTGGAAGTGCTGTCGGATAACCTGAGGGAACTGCAGCGCACCTTGCAGGAGCAGAAAAGGAAAACCCACTga

Function

GO: NA

KEGG:

id description
K12481 RBSN, ZFYVE20; rabenosyn-5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017054 True 2349 mRNA 0.55 11 43118218 43124403

Neighbor

gene id symbol gene type direction distance location
AMCG00017053 NA coding upstream 20703 43095638 ~ 43097515 (+)
AMCG00017042 NA coding upstream 265924 42850719 ~ 42852294 (+)
AMCG00017045 NA coding upstream 268552 42845705 ~ 42849666 (+)
AMCG00017046 ift122 coding upstream 273907 42820792 ~ 42844311 (+)
AMCG00017044 NA coding upstream 308516 42796198 ~ 42809702 (+)
AMCG00017056 NA coding downstream 184292 43308695 ~ 43314951 (+)
AMCG00017055 NA coding downstream 193287 43317690 ~ 43319313 (+)
AMCG00017066 NA coding downstream 241424 43365827 ~ 43369383 (+)
AMCG00017065 NA coding downstream 247255 43371658 ~ 43384849 (+)
AMCG00017076 lrrn1,LOC102780565 coding downstream 420251 43544654 ~ 43546804 (+)
G17882 NA non-coding upstream 5582 43053086 ~ 43112636 (+)
G17580 NA non-coding upstream 1139552 41976395 ~ 41978666 (+)
G17518 NA non-coding upstream 1375445 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 1401229 41713810 ~ 41716989 (+)
G17498 NA non-coding upstream 1428019 41688010 ~ 41690199 (+)
G17909 NA non-coding downstream 111417 43235820 ~ 43236036 (+)
G17969 NA non-coding downstream 269890 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 345667 43470070 ~ 43470846 (+)
G17987 LOC107575789 non-coding downstream 375767 43500170 ~ 43500476 (+)
G18077 NA non-coding downstream 977623 44102026 ~ 44103399 (+)
G17697 NA other upstream 720431 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 3863728 39239073 ~ 39254490 (+)
G17193 NA other upstream 4614586 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 7913986 35158597 ~ 35204232 (+)
G16550 NA other upstream 9017355 34100315 ~ 34100863 (+)
AMCG00017078 LOC106565757 other downstream 1001811 44126214 ~ 44137931 (+)
G18192 NA other downstream 1530249 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 1824631 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 6247619 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 6278128 49402531 ~ 49403845 (+)

Expression


Co-expression Network