AMCG00017056


Basic Information

Item Value
gene id AMCG00017056
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43308695 ~ 43314951 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017056
CACGAAGAAGACTGCAGTTCCCAGAGGGCCTTGTGTGGGACAGTTGCACGATGGGAGGAAGCGAATGAAGCGCATGTTGTGGAAATGACAAGCGACTAATGAAACAGTTTGTTTCAGAGCTGTTTGAGCAGAATAAGTTTGAGCTGAGGATAGCAGGGGGAGCTGTGCGGGACCTGTTGTCAGGCAAACAGCCCCAGGATGTGGACTTTGCCACCACAGCCACCCCCAGCGAGATGAAGAGCATGTTCCAGACAGCGGGCATCAGAATGATCAACAATAAAGGAGAGCAGCACGGCACCATAACTGCCAGGATCCACAACCAGAATTTTGAAGTGACCACACTGCGGATTGACGTGGTGACGGACGGGAGGCATGCAGAAGTGGAGTTTACCACTGACTGGCAGAAAGATGCTGAGCGAAGGGACCTCACCATCAATTCCATGTTTTTAGGATTAGATGGCACTCTGTACGATTACTTTAACGGGTACGAAGATCTCAAGAAGCGAAAGGTCAGGTTTGTTGGAAGTGCAAACCAGAGGATCCAGGAGGATTTTTTGAGGATTCTACGATATTTCAGGTTTTATGGGAGGGTTGCAGAGGAGCCTGGAGATCATGAGCCTGAGACACTTGAGGCCATTCGAGAGAATGCCAAAGGGCTGGCTGGCATCTCAGGAGAGAGGATCTGGGTGGAACTGAAGAAGACTCTGGTGGGAAACCATGCGGCCCACTTAATAGACCTCATGTACGACCTTGACGTAGCACAGTATATTGggTTACCTGTGGAGGGGAATCTAGTGGAGCTGAATCGAGTGTGGAAACACGTACAGAAGTGGTCCCCAAAGCCCATGACTGTCCTGTCTGCATTGCTCAGGGCAACAGAGGAAGTGGAGAAAATCGACCTGAGGTTAAAGATCTCTAAAGAGGAAAAGAACTTGGGTGTGTTCCTGGTGAAGTACAGAAGAGACCTGCTGAAGGCAGAAGATGAATCAGACTGTTTGAAGCCATACAGAGACTTTATTATTGATTCCAGGGAACCAGATGCCCAACACAAAGTCTGTGAGCTCCTGAAGTACCAGGGGGAGGAGCAGCTGCTGGCTGAAATGGAGAAGTGGTCCATCCCACGCTTTCCAGTCAGTGGGCATGACCTCCGGAAAATGGGCATATCTTCTGGCAAGGAGATCGGGACAATCCTGCAGAACCTGAGGGAGATCTGGAAAAAGAGCCGGTACCAAATGGACAAGGAGGAACTATTAAACAATGTCAAGTCATAAATAGAGAAGCTTCTGTTTCCTGCCCCTTCAGACCATTgctaaaaaaaggaaaaactgccATTGCTCCACTTTTTCCATAACCCGTTTCTGACGCTACTGAAAATATTGGAGGTGAAAGTTAAAGGGATTGATCTTTCCAGAGGAAAAGTATCtgcttgaaatgaaaaaataagtttacacAAAAGCATAGGGAGGTTGGATTAACAGTTTTTGTGTTCCTCCATGAAGTGGCTTTGCAGGACGACTCCCATCCCTCTTTACTTGTTGTTACTACATGGGGTGTTCAAACTTGTGATTCATGGGTATAgctgtcaaaaaataaatcattcatcAATTTACTGTTAATAGTAGTGACATAAGGTAATGTAAGCATAATTAAAgggttttgcattttacaaaacaaattaaatgtgatatTCACAATACCTATATATTTTGCGTACATTCAACCCACCAACACAAGTGCACTTTGCTACTTTGTATATTGACAGCAGATTATGCAGACCTGCAAGGATAGTAATTACTTTAGTTTTCTGCCAGTTGTTTAAAATTAACCGTTATTTATGACCTTggtgaaatataaaaatgatcaTGCTGCATGTTTCATGAAACTTCTTTCTAGCTCTtgtttgaattgtattactCTGAGAAACACTGTTGTACGTGTACAGTTAAAACTTTCATCTTATTCTTTCAAGTGcat

Function

GO:

id name namespace
GO:0042780 tRNA 3'-end processing biological_process
GO:0009022 tRNA nucleotidyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017056 True 1974 mRNA 0.44 7 43308695 43314951

Neighbor

gene id symbol gene type direction distance location
AMCG00017054 NA coding upstream 184292 43118218 ~ 43124403 (+)
AMCG00017053 NA coding upstream 211180 43095638 ~ 43097515 (+)
AMCG00017042 NA coding upstream 456401 42850719 ~ 42852294 (+)
AMCG00017045 NA coding upstream 459029 42845705 ~ 42849666 (+)
AMCG00017046 ift122 coding upstream 464384 42820792 ~ 42844311 (+)
AMCG00017055 NA coding downstream 2739 43317690 ~ 43319313 (+)
AMCG00017066 NA coding downstream 50876 43365827 ~ 43369383 (+)
AMCG00017065 NA coding downstream 56707 43371658 ~ 43384849 (+)
AMCG00017076 lrrn1,LOC102780565 coding downstream 229703 43544654 ~ 43546804 (+)
AMCG00017073 NA coding downstream 373109 43688060 ~ 43731559 (+)
G17909 NA non-coding upstream 72659 43235820 ~ 43236036 (+)
G17882 NA non-coding upstream 196059 43053086 ~ 43112636 (+)
G17580 NA non-coding upstream 1330029 41976395 ~ 41978666 (+)
G17518 NA non-coding upstream 1565922 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 1591706 41713810 ~ 41716989 (+)
G17969 NA non-coding downstream 79342 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 155119 43470070 ~ 43470846 (+)
G17987 LOC107575789 non-coding downstream 185219 43500170 ~ 43500476 (+)
G18077 NA non-coding downstream 787075 44102026 ~ 44103399 (+)
G18084 NA non-coding downstream 802015 44116966 ~ 44201038 (+)
G17697 NA other upstream 910908 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 4054205 39239073 ~ 39254490 (+)
G17193 NA other upstream 4805063 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 8104463 35158597 ~ 35204232 (+)
G16550 NA other upstream 9207832 34100315 ~ 34100863 (+)
AMCG00017078 LOC106565757 other downstream 811263 44126214 ~ 44137931 (+)
G18192 NA other downstream 1339701 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 1634083 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 6057071 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 6087580 49402531 ~ 49403845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_11092046_11095664 TRNT1 coding CI01000340 null 11091295 ~ 11095664 (-)