AMCG00017059 (crbn)


Basic Information

Item Value
gene id AMCG00017059
gene name crbn
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43344470 ~ 43364869 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017059
TCGTCTTGCCCAGATCGCCGCTGTCGTCGAGCTCCCAGCGTGCATCTGGGTGTAAACAGAGACTATGGCTGACGAGGAGGGAGGTGGAGACCAgaatatcaacaacaacatggGGAATCAGCTGGAGCTTTTACCGGAAAAtgaggaggaagatgaagatgaCATGGAAACTGAAGATCGTGATGGTGAAAGAGCAGAAAAGCCCAACATTATCAACTTTGACCCCAGTCTCCCAACGTCACATGCTTACCTAGGCATGGACATGGAGGAGTTCCATGGGCGCACAGTGCACGATGAGGACAGCTGCCAGATGATCCCGGTGCTGCCCCACACCGCCGTGATGCTGATCCCCGGGCAGACATTGCCCCTTCAGCTTTTCAGACCTCAGGAGGTCAGCATGATGAGGAATCTCATCCAGAAGGACAGGACCTTCGCAGTGCTTGCATACAGTGATGCAGGGGACAGACAGGCGGAGTTCGGAACGACGGCCGAGATCTACGCATATCGGGAGGAGCAGGAGTACGGCATCGAGACTGTCAAAGTAAAGGCAGTGGGAAGACAGCGGTTCAAGGTGCACGAAATCAGAACGCAGGCCGATGGGATCAGACAGGCAAAGGTGCAGATCCTCCCTGAGAGAATCCTCCCAGCCACGCTGTGCGCGGTGCAGCTCAGCTCCCAGTCCCGGCTCCACATGCACACAGCCTCCCAGCCCCCGGACAAGCAGTGCAAGCCGGTACAGGGCTGGTGGGGCAAGTACCAGAAGAGAAAATTCCATTGTGCAAATCTGACTTCCTGGCCTGCATGGGTTTATTCCCTGTATGATTCGGAAATCCTAATGGACCGAGTGAAGAGGCAGCTACACGAGTGGGATGAAAATTTGAAAGACGAATCCCTCCCCTCAAATGCTATAGATTTCTCCTATCGCGTTGCCGCTTGCCTGCCCATTGACGATGCCTTGCGTATCCAGCTGCTAAAAATAGGCAGCGCAATCCAGAGGCTGCGCTGTGAGCTGGACATCATGGACCGGTGCACCTCCCTTTGTTGTAAGCAATGTCAGGACACCGAGATAACaaccaaaaatgaaatattcagTTTGTCTCTATATGGACCCATGGCTGCATATGTCAATCCACACGGATACGTCCATGAGACTCTGACGGTGTACAAGGCAAACAACCTCACCCTGACAGGAAGGCCATCCACGCTGCAAAGCTGGTTCCCAGGGTATGcttggacagtagcacagtgccGGACCTGTGGCTCTCACATGGGCTGGAAGTTCACGGCCACCAAGAAAGACATGTCGCCATCGAAGTTCTGGGGACTGACCCGCTCTGCGATGCTGCCCCGTATCCCTAAGTCAGAAGACGAGGACGGGGAAGAAGGTTCGCGGCTCCTCTGCCTGTAACGTTTCTGGTGTAAATGCAAGCGAAATGAGCTCCAAAGCTTGGTAATCAGAATCCACTACTCCTATTTATCATAACTAAAGCCAGCTTACAACTCTGCCCAAACTCTCTGCAGTTTAGGTTCTCAGTGATGAAGATTGAAGCTGGCTGTTGGTGTCAGAAACCGGAAAGcaatatgcattttgtaatgtgcCAATAATTGCTGTACAGTACTATGAgctggggagagaaaaaaaatgacaataaagtTTATTCGGCAGCCCACCATATCCCTGCCATAGCATGCTAGCCTCCCAAACACCTGTGTGCTGTAAGTTCAGTACTGTCtaacaatatacaatatcaGGCTTCACATATCTGCAATAGAGGTGACCTTGTGGTTTTCAAATTTTACTGGCATCTCGTTTTCTCCCTTTTTCATTAGCCTGTGGCAGTCCTGGTTGTTCATAGTCCGTGGTGTCTCAGAGATACTGCCAAGTGTGTGCGACTCTGCATGCAGTTAAGTAGGATATTAGTGTGGTTAGACCATGTACTGTACTGTGGGGAAAATAATCTTGTTCCCTGGGTCCGTTTCCGGTATAGCACCTGTGTCAGATGTCGTCTTTTTATTCCTCTGTGTTAAAGTTCAGACTACTGTGACCTGTAAGTAATTCTTAATAAGAAATCTCTATCTATATTTGGAAAGGTGAAAAAGGTGCGTCATGGTCTTTAACTGTGTGCCtcggaaaagaaaagaaatactgccccatgagaaaatatattcatgGGCGGCTGATGGAAGATTCTGTGTGTGACAGCTCTGTTAGGCATTGAATTTCTTTCTGCATGCAGTATAAATGTATCACTCTGGGTCCAAGTCAAGAAACAGTACTGCTTAATCTTTTAAAGCACCTTTTTAAATTGGCATTTAATGACTTCAGATCATACTTCTATGGAGAAGATGATGATGAGAGTAATCGAGGCAGTTGCAAATGGGGAAATAGCTTTTAAAGTCATGTAATGCTGTTGGAAGggagtgtgtttatttttgattcagatcttttatttttgattcTTGCTACTGTGTGATTTCTGTGCATGAGGTAAGAGTACTCTCTTGCTCATATCAGGGGAATGGCTGCTAGACTGGTCTCGTAAGATAACCATGCATTATTAAAGTCTGACcgatctttttcttttttgagttAATAAAGagcaggaaatatttttttttaagatttttttttcatgtaaatctcatgttatatataaaaaaatctatattttgttaacttcctgcaaaaaacaaaaaacatttaatagtcACCTGTACCAGATTGTGTATGATTGTATCCATGTGTTGACTGAAAGGTGTTTTAACATCAAGAGGGTTTGGGGTTTGTATTTCCAACACATCTTCAGAGATGAACATTTGGGTTCTTTAATCCAAAATGAAGATGCCAATACCAATTGTAATTGGTAAAGACTGTATATATTGTTagttaaaatctatttaaatattggaaaacaaatgtgtgttgcTGACAGGTATTCATTCTTAGATTGCTAAACTCCAAAGGATTGCGATGGCTCGAATCTATATCCACCATAAGAtggctgtgttggtttttgctAACCGGATCACTGGGAGCGCAAAGCTATAACTGGGATGTCATGTATAGGTGTTATGATTGCTTCACAGTTGATCATTGCTGACATAAATTGAAACCCATGCGCCAACAGTTTTATCTGCAGGAAATGTTTCCAGCGCTGCCggtgaaagaaattaaaaacataaagggAACTGTAATTCTCCGATCCTTTCCTGATATTCTGCTGCTAGTTTCTGTCATGAACACGAGACATGTAGAGATGCCTTTATTGCCAGGAGAATGGGGTCTTGATTTCAGCATTAGGTGAAGAAGAGTGCTGTGATTTACCACGAGGATAATACTAATCTTTCTTCTTGTTTgaagaattaataataataataataataataataataacagtatgcatatacatttatagtAATTGGGAAGCAAGATTAGATTAATTTGATAGCAATTccgattttttttaatcacttttgtGCTTTGAAActttagtatatattttatgataataTAATTGACAGAATATGAAAGTGATTTCTCATCGGCAGTGACAGCGATAGGATGTACATAATTCCTTTAATCTGCAAAATAATTTACCTTCCTTGAATAAGCAGTTCAATGTCACACTTAGAAAATGTACAACAAGATTATTCCAGAAGACAATAAGAAATCAATCATAAATTGCAATgcaatcaaatatttgaatttcaaagtaaaagggaaaaaaaaaaacaatcaaaaaatgttttagaaagtAAATGGCTATTTCAAACCAATGCACTTAAGTCAGCAAGGACAAAATcgcattttcacattttattattattatcattatttatatatgtatttatattttataaagattGCCAAACCCAATTCTGTCCAGGGGACAACACTGAGGAACATGTgacaacaaagacaaagactGTTGTGTTACGACTGAAAACTGAGTgattttaaacaattgtaatCTTAtcagaataattatttacagaaatTGTAACTCTTTTCTGAGAAATCCCTTTCCTAAGAGCACATTTATCTTtagaacaagaaagaaaaggcacaagTGCAGAATAGTAAAAAGCAATCTTTGAATAACACCTTAAGAGCCCTGGCTAAAtgcttcctgtttgtttcatatttctTATGACTGCACTCTTCTTATGCTTTTCCCAGTAAAGATTACATTGAGTCCCTAAACcctgtctgctgttttttcttattatacTATGTACCTGAATTGTAGGTGTTTAATAGATGCATGGAACAGGTGTTTTCATCTTCCCTCCTGCTACTGAAGCGCACCTCCTCATCTGAAG

Function

symbol description
crbn Predicted to enable metal ion binding activity. Involved in fin development; limb development; and otic vesicle development. Acts upstream of with a positive effect on cell population proliferation. Acts upstream of or within embryonic pectoral fin morphogenesis and otic vesicle morphogenesis. Part of ubiquitin ligase complex. Is expressed in several structures, including cranial vasculature; nervous system; notochord; otic vesicle; and radial glial cell. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human CRBN (cereblon).

NR:

description
PREDICTED: protein cereblon

GO: NA

KEGG:

id description
K11793 CRBN; cereblon

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017059 True 4323 mRNA 0.42 11 43344470 43364869

Neighbor

gene id symbol gene type direction distance location
AMCG00017057 NA coding downstream 42662 43297944 ~ 43301808 (-)
AMCG00017058 NA coding downstream 48181 43291325 ~ 43296289 (-)
AMCG00017064 NA coding downstream 73501 43155639 ~ 43270969 (-)
AMCG00017062 nr2c2 coding downstream 188837 43131350 ~ 43155633 (-)
AMCG00017063 mrps25 coding downstream 215804 43127256 ~ 43128666 (-)
AMCG00017075 gnat1,LOC108271583,LOC108231337,LOC108424115,LOC103133111,LOC102214189,LOC100706288,LOC102793896 coding upstream 492624 43857493 ~ 43872095 (-)
AMCG00017074 LOC103360486 coding upstream 516409 43881278 ~ 43913423 (-)
AMCG00017077 NA coding upstream 737149 44102018 ~ 44125909 (-)
AMCG00017085 NA coding upstream 1091909 44456778 ~ 44458554 (-)
AMCG00017086 gnai2b,LOC108271854,LOC107723915,LOC107587570,LOC107696468,LOC107595419 coding upstream 1118742 44483611 ~ 44503250 (-)
G17910 NA non-coding downstream 108434 43235805 ~ 43236036 (-)
G17754 NA non-coding downstream 792697 42550325 ~ 42551773 (-)
G17755 NA non-coding downstream 795052 42544360 ~ 42549418 (-)
G17505 NA non-coding downstream 1739075 41601924 ~ 41605395 (-)
G17423 NA non-coding downstream 2099245 41244926 ~ 41245225 (-)
G18015 NA non-coding upstream 268352 43633221 ~ 43633422 (-)
G18066 NA non-coding upstream 472308 43837177 ~ 43891907 (-)
G18101 NA non-coding upstream 771319 44136188 ~ 44138542 (-)
G18156 NA non-coding upstream 1012128 44376997 ~ 44377221 (-)
G18164 NA non-coding upstream 1022574 44387443 ~ 44387995 (-)
AMCG00017060 NA other downstream 35844 43305697 ~ 43308626 (-)
AMCG00017061 NA other downstream 57867 43280237 ~ 43286603 (-)
AMCG00017051 NA other downstream 370037 42948991 ~ 42974433 (-)
G17842 NA other downstream 479854 42808711 ~ 42864616 (-)
AMCG00017014 NA other downstream 1405907 41936926 ~ 41938563 (-)
AMCG00017067 sumf1 other upstream 268901 43633770 ~ 43659602 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other upstream 1288586 44653455 ~ 44656905 (-)
AMCG00017105 srgap3 other upstream 1753421 45118290 ~ 45161137 (-)
AMCG00017158 NA other upstream 5124258 48489127 ~ 48494407 (-)
AMCG00017178 NA other upstream 6122328 49487197 ~ 49494144 (-)

Expression


Co-expression Network