AMCG00017060


Basic Information

Item Value
gene id AMCG00017060
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43305697 ~ 43308626 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017060
CGCTTGAACCCCGCGTCAGAGGAGAGCTGAGAAACAAACAGTAGCCTCAGGAGATTTTTGGggaagaaacaacaaaatagaTCAAAATTCTTAGACAACGAGTAATGAACTGCGTATTTATTGGACAGCCGCCAGTTACCATTGGATAAGTTGGACGGATTTGCATCAGCTTTAAACGGAGCATGTCTCCAGCTGTGGTATACATAAAAGGTATCTGATGTAACTTAGTTTGATGTGTTTGTAAGAAACTTTACAGCAAGAGGCTTCGCTGTGTTTGCTCCGTAATGTGTCCCAGAGCAGACGACTTTCATCAGATCTAACTCTAAGCACACTTGCTATACCACACTGCGCTGCGCTGTCATGCCTCAGGAAGCCCCGGAGGGTCCCCTGCCTTTACTGAGATCCCTGAGCAGCGACACACCTGCCAATGTGATATTTTGTAACCGGAGCCCTTGCGTTGTGCGGCCCATCTGGATCAACTTCAAAGGCAGGCCGCAGCCGTATGACAGTCTGCAGCCTGGGACAGGGAGGCGCATGAAGACCTTCGTCACTCACCCTTGGCTGTTCAGAGACGCAGAGACGGATGAGCCACTGGCTGTGAATGGAAATGAGATGTTTGTCCCCACAGCAGCCCATAATACTCGGATGGTGTTGCTGCACATCACATTGCCAGTCTTCACGCTGAAAGAAAGGTGCCTGCAGGCTATCCGCCGTTTGGTCCGGCCTGAAGACTTCAGGAAGCTGGAGATTGCCAGGTGTCTCCACGAAGACCTGGAGGATCATCCTAGTGTGGAGAAAGACATGAAGCGAATTGCTCGCCGCATGGCCCAGCAGTTGCACGAGGAAAGAGAAGCCAGCAGCCACAGAGACTGGACTggatgaaaaacaatacaatacttaaaatattCTGTGCCGCAAAACAGACACTATGATGACAAGTTCCTAAAATGTATATCTTACAAAGACAATAGGGACAAGTGATCGCAACTGAAGATGTGGAACAAACCTTATCTGGTTAATCTTTTGACCCACTCTCTTCctattttgcaatatttaacCTAAAATCCAATCATTAGGAATGCTGTGAATGTGAGGTGCTAATTCTGCTGCTAGATCCTCATTGTTGTTTAAATGATCTGTGTGAACTGCATCGGAGTCAAACAAAGACCTTTtcgttattttaaataatgaagcaTTTTTCATAAAGAGCAATGGCGTATTGATACTGGTACGTTTACATAGAGAgacaaggaagaaaaaagaaaatggcagtAATCCACTGTGTCTAAAGTGAAGCATTCCTGCTTTGATTGTCTGCTGGGTGCCTACGTCATGCAGCACAGTGCAGCCATAACAATATTAGTCCTGTTTCTGGAATTTGAAagattttgtaatgtaaaaaaccCTTCAAGAACTTGGAACACCAATGTTTATTTCAGAGGTTTTAATAGCTTCCTCCAAGCCTTATAATAACTATGTTCGTGGTCTAGTGGTATGTGACAGTGGCTAGAAAAACGCTCATTCTCCCAGGCCACTGGAATGTGACCGAAGTTGTTCCCACATCTGCATTATGTATCGTCTCACTATATGACTTGTATGGGCTGTGATGTTAAACATGATCAATTTCATAATTTCAAACTGGGCATGCACAGGGTTTTAGAAACTCTTGACTCAAGCTCAAACAAAATTAGTtattgttaattcaattaatgtgCATTGTCAACCCAAATGTACACCCCTATCTGCAGTGGGGCACTATAGGGTAATCAAGCAATCATTTTTGGATGAttgcctccctctctgtgtgagAGGTGTCTAGGCATCTATATCGTCCTTGATTGCTGCTCATGGCAGATTGAGAGCGAGTGCTGCTGTAAAGAGTGATTGTGGGCTGCAGTTCAAGGTGAATTCGTTTCTGAAGATTTTGTAAATCCCACAGTCCTCTAGTGCAGCTGTAGTGTACTTGTAAGAGAAACTGATTGGTCTTTGTCACTCAAATCTCTTGTGTAGTTTTACTGTTAAGcaactgtatattaatttcctgtattagtatttttttattataacattCTAAAGGGTCTTACTGTATGTATCCAAGGTCATGTTTCAGAGAATATTGAGCATTCCGtgcatatatctatatatctatatagatatatagatatgcaCAGTATAAATGTTTGTGCTCACTCTAGCATTTGGTTTTTAAACACGTCAAACAGTTCTATTTAATGGTGATACAATGAGCATTTTGGAGCTGTATTTCTTTTACGTTTAGAATTAAATTGGTAAAACTAACCTTTTCTAAAGCATTTATTTCTCTTGTATTCGTGTGTGGGAttggaaatgcaaaatatttgacCAGGTTGCAG
>TU22237
GCGTCAGAGGAGAGCTGAGAAACAAACAGTAGCCTCAGGAGATTTTTGGggaagaaacaacaaaatagaTCAAAATTCTTAGACAACGAGTAATGAACTGCGTATTTATTGGACAGCCGCCAGTTACCATTGGATAAGTTGGACGGATTTGCATCAGCTTTAAACGGAGCATGTCTCCAGCTGTGGTATACATAAAAGGTATCTGATGTAACTTAGTTTGATGTGTTTGTAAGAAACTTTACAGCAAGAGGCTTCGCTGTGTTTGCTCCGTAATGTGTCCCAGAGCAGACGACTTTCATCAGATCTAACTCTAAGCACACTTGCTATACCACACTGCGCTGCGCTGTCATGCCTCAGGAAGCCCCGGAGGGTCCCCTGCCTTTACTGAGATCCCTGAGCAGCGACACACCTGCCAATGTGATATTTTGTAACCGGAGCCCTTGCGTTGTGCGGCCCATCTGGATCAACTTCAAAGGCAGGCCGCAGCCGTATGACAGTCTGCAGCCTGGGACAGGGAGGCGCATGAAGACCTTCGTCAAGACGCAGAGACGGATGAGCCACTGGCTGTGAATGGAAATGAGATGTTTGTCCCCACAGCAGCCCATAATACTCGGATGGTGTTGCTGCACATCACATTGCCAGTCTTCACGCTGAAAGAAAGGTGCCTGCAGGCTATCCGCCGTTTGGTCCGGCCTGAAGACTTCAGGAAGCTGGAGATTGCCAGGTGTCTCCACGAAGACCTGGAGGATCATCCTAGTGTGGAGAAAGACATGAAGCGAATTGCTCGCCGCATGGCCCAGCAGTTGCACGAGGAAAGAGAAGCCAGCAGCCACAGAGACTGGACTggatgaaaaacaatacaatacttaaaatattCTGTGCCGCAAAACAGACACTATGATGACAAGTTCCTAAAATGTATATCTTACAAAGACAATAGGGACAAGTGATCGCAACTGAAGATGTGGAACAAACCTTATCTGGTTAATCTTTTGACCCACTCTCTTCctattttgcaatatttaacCTAAAATCCAATCATTAGGAATGCTGTGAATGTGAGGTGCTAATTCTGCTGCTAGATCCTCATTGTTGTTTAAATGATCTGTGTGAACTGCATCGGAGTCAAACAAAGACCTTTtcgttattttaaataatgaagcaTTTTTCATAAAGAGCAATGGCGTATTGATACTGGTACGTTTACATAGAGAgacaaggaagaaaaaagaaaatggcagtAATCCACTGTGTCTAAAGTGAAGCATTCCTGCTTTGATTGTCTGCTGGGTGCCTACGTCATGCAGCACAGTGCAGCCATAACAATATTAGTCCTGTTTCTGGAATTTGAAagattttgtaatgtaaaaaaccCTTCAAGAACTTGGAACACCAATGTTTATTTCAGAGGTTTTAATAGCTTCCTCCAAGCCTTATAATAACTATGTTCGTGGTCTAGTGGTATGTGACAGTGGCTAGAAAAACGCTCATTCTCCCAGGCCACTGGAATGTGACCGAAGTTGTTCCCACATCTGCATTATGTATCGTCTCACTATATGACTTGTATGGGCTGTGATGTTAAACATGATCAATTTCATAATTTCAAACTGGGCATGCACAGGGTTTTAGAAACTCTTGACTCAAGCTCAAACAAAATTAGTtattgttaattcaattaatgtgCATTGTCAACCCAAATGTACACCCCTATCTGCAGTGGGGCACTATAGGGTAATCAAGCAATCATTTTTGGATGAttgcctccctctctgtgtgagAGGTGTCTAGGCATCTATATCGTCCTTGATTGCTGCTCATGGCAGATTGAGAGCGAGTGCTGCTGTAAAGAGTGATTGTGGGCTGCAGTTCAAGGTGAATTCGTTTCTGAAGATTTTGTAAATCCCACAGTCCTCTAGTGCAGCTGTAGTGTACTTGTAAGAGAAACTGATTGGTCTTTGTCACTCAAATCTCTTGTGTAGTTTTACTGTTAAGcaactgtatattaatttcctgtattagtatttttttattataacattCTAAAGGGTCTTACTGTATGTATCCAAGGTCATGTTTCAGAGAATATTGAGCATTCCGtgcatatatctatatatctatatagatatatagatatgcaCAGTATAAATGTTTGTGCTCACTCTAGCATTTGGTTTTTAAACACGTCAAACAGTTCTATTTAATGGTGATACAATGAGCATTTTGGAGCTGTATTTCTTTTACGTTTAGAATTAAATTGGTAAAACT

Function

GO:

id name namespace
GO:0030947 regulation of vascular endothelial growth factor receptor signaling pathway biological_process
GO:0045765 regulation of angiogenesis biological_process
GO:0030218 erythrocyte differentiation biological_process

KEGG:

id description
K03871 VHL; von Hippel-Lindau disease tumor supressor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017060 True 2372 mRNA 0.42 3 43305697 43308626
TU22237 False 2265 lncRNA 0.42 3 43305773 43308614

Neighbor

gene id symbol gene type direction distance location
AMCG00017057 NA coding downstream 3889 43297944 ~ 43301808 (-)
AMCG00017058 NA coding downstream 9408 43291325 ~ 43296289 (-)
AMCG00017064 NA coding downstream 34728 43155639 ~ 43270969 (-)
AMCG00017062 nr2c2 coding downstream 150064 43131350 ~ 43155633 (-)
AMCG00017063 mrps25 coding downstream 177031 43127256 ~ 43128666 (-)
AMCG00017059 crbn coding upstream 35844 43344470 ~ 43364869 (-)
AMCG00017075 gnat1,LOC108271583,LOC108231337,LOC108424115,LOC103133111,LOC102214189,LOC100706288,LOC102793896 coding upstream 548867 43857493 ~ 43872095 (-)
AMCG00017074 LOC103360486 coding upstream 572652 43881278 ~ 43913423 (-)
AMCG00017077 NA coding upstream 793392 44102018 ~ 44125909 (-)
AMCG00017085 NA coding upstream 1148152 44456778 ~ 44458554 (-)
G17910 NA non-coding downstream 69661 43235805 ~ 43236036 (-)
G17754 NA non-coding downstream 753924 42550325 ~ 42551773 (-)
G17755 NA non-coding downstream 756279 42544360 ~ 42549418 (-)
G17505 NA non-coding downstream 1700302 41601924 ~ 41605395 (-)
G17423 NA non-coding downstream 2060472 41244926 ~ 41245225 (-)
G18015 NA non-coding upstream 324595 43633221 ~ 43633422 (-)
G18066 NA non-coding upstream 528551 43837177 ~ 43891907 (-)
G18101 NA non-coding upstream 827562 44136188 ~ 44138542 (-)
G18156 NA non-coding upstream 1068371 44376997 ~ 44377221 (-)
G18164 NA non-coding upstream 1078817 44387443 ~ 44387995 (-)
AMCG00017061 NA other downstream 19094 43280237 ~ 43286603 (-)
AMCG00017051 NA other downstream 331264 42948991 ~ 42974433 (-)
G17842 NA other downstream 441081 42808711 ~ 42864616 (-)
AMCG00017014 NA other downstream 1367134 41936926 ~ 41938563 (-)
G17421 NA other downstream 2088466 41216651 ~ 41217231 (-)
AMCG00017067 sumf1 other upstream 325144 43633770 ~ 43659602 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other upstream 1344829 44653455 ~ 44656905 (-)
AMCG00017105 srgap3 other upstream 1809664 45118290 ~ 45161137 (-)
AMCG00017158 NA other upstream 5180501 48489127 ~ 48494407 (-)
AMCG00017178 NA other upstream 6178571 49487197 ~ 49494144 (-)

Expression


Co-expression Network