AMCG00017061


Basic Information

Item Value
gene id AMCG00017061
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43280237 ~ 43286603 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017061
CCGGGTGTATGCTGGGAGTCTCTGACCTCACCAATATGGCGGACTGGTAGAGGAAGAGCCATTTCCCCAAGTCTATTTTAccttatttcttttaaaatggataagaaaaaaaagttatatgaCGTGACAGCTGCTTCGCTGGTGGACCTGAAGGCTGAGCTCTACAGGAAGCAAGaagcatttaaacatgaaaagttAGTGAAAGATGCAGGAGCTCCACTGAAAACCAAGGTCACCAACAAGAAACCCACTATCTGGAGTAAACAGAATGAGGGGGTTACGTCCAGAGCACAGAAAGATGTGGAGCAAACAAGTGAAGAGGAAAATACTCTGGACAAGGCAAAACGCAGACTTGAAGAGAAGGCCAAGCTCTATGATCAAATGACCAAAGGAGACTTTCCAGATGAAGAAACAGAAAGTTTGTTCCTGGTGGATTTCACCCAGAAGATCATTGACCAGAAGAAGGAGGTCTGGGCGCGATGTGAGAGAGAAGCTACAGTGAggaatgcagagagagaggaggaagagagtgCTGTAGGAGACGCTCCCATTCCTCCCCCTGAAAACCCTGACGAGGAATGggtGGACTATGTTGATGCTCTTGGTAGATCCAGGAGATGCTTGAAGAAAGATTTGCCAGGATTTCTGAAAATGGACAAAGAGTTGCATGGCAAGAGGGGGGAGACAGTGGGAAAGACGCTGCTATCGGAGGACATGCGCCGTGAGCTGCAGCGGcaggagtgggagagggaggaggaggaggccatGAAGAAGCCTGTCGGCCCGCTGCATTATGAAGACATCCGGGAAAGAGAGGCCCGGGATCTTGGTGTGGGTTACTTTGCCTTTGCGCAAGACGAGGCTCTCCGACAAAAGCAAAGGGATACTCTGGACATGCTGAGAGACCAGaCCATGGGTCAGAGAACCAAGCGAGAGCAGTTAAAAGACAAACGGAAGGCCTTGTTGGAAGCCCGACTAGCAAAGGTGCGTCagaggaagatgaagaagatGAAGCTAGATGGGACAGAAGAAGAGGTGGCAGCAGAAGATAAAGAAGtggaagaagaagAGACCATTGGGCCTGTGCCTGTGCCGGAGCCGCACTCTGAGGAGCTGATCCCTGTGTCCACCAGGAAgaaggtggaggtggaggtccAGCAGAGGAAGGACACTAAGGCTGGGGTACCCCACGTGCGCGAGTGGGATAGAGGGAAAGAGTTCACCTTTGGTCAGTGGTCTAGCAGGCGAAGGGAGGAGCGCGAGGAAGAATTTGCACCTCCTACTGAGTACTTCAACGACTATAAGAAACCCAGCCTGGGGCTGAACTGGAACAAAAGCaagcagaaatatatttttcaagggTCAGAGAGGCAGAATTCTGGAAGCAGTGGCCAATTCAGTCCTGCAGCTCAATCACAATCACAGACACAGTCCCAGACTCCTCCCCAGCAACAGAGTCTTGATGACTTGCTGGCTTTTTACAAACAGTCATCTTGAGCAGTCAGTCCGTGCCGCTCTACAGAAGATGCAGGAGGAACAGCTGGCTCCCGGCAGCTGCCTCGTCTGACtcccacagtgcagtgcaattcTAAGTTGTCACCCACAGAGTAGGCAAGGCACATCAccaatgttaatgtttttagttttttgtgctGCCCTAGATGTACTTTCAGCAGGTTTGTGTATTTACCAAGGTTTCTGATGTTTTATATAAGATGCTAAAAGGAATTGTATCGATCATATTTGGCAATGTTTGCCTGTTTCTACAGATTTCACTGCATTAGGGACAAAGTGATTGTATTACATAAATGGGTTACCTGCTGAATTCTTGTTTGAATTAAATCATTATCAGAACCATCACTTTTTCTTAATCCTTTTGGCTGCACTTCAGTTTGAATAACAATGTTATGTATATCCTTTGAAGAccttttaatttatatgttaACAATGTTAAATTCTGGTCCCAATCAATTTGTTTATCATTGCACCCCGACTTGTAGAAATGAAAGATCCATATTGAGAGTTTGCTCTGCTGACTCTCCTGTCAATATCTTGTCTAACGCTGGTAATACAATAAGAGAGATCCATGAGACTGTTTGGGAGAAGGATGTTCAGCACTGTTAGTTGCTGAATCTGCTTAATTCTGCAGGTAGGATTTCACCCACAAAACTAACATTTGCAACATTGCCGACTATTACAGCTttctcaatatatttttttcagtagaTCACTGTTTGTTTCCCCTTGCATAGTTATGCAAATTAAGAAGTCTGTCATCCCATCATATTGGCTAAACCTTTTTCACTTTCCTCACTCGAGAGATCATTCTAGTCTCCAAGGAGCAGCAGAAAAGACCTTGTGTAATTTGTCCTCAAAATGTAGAAGGCTGGGTAACTGTAAATAGGCAATCTGCATGCGGCTGAGAGTATtgacacccttcatttgaaacttaAGTTAGTAATTATTTGTCAGCTATAACTCCCCACCCCCTCATTTTCCCTCTTCCTTAAAGGACATGAGctattttcaattcaatattgTCACTCACGTtgtactaatactactactaatacatgTTTTGCATGTGTGGTAAG
>TU22218
TAGGATTTCACCCACAAAACTAACATTTGCAACATTGCCGACTATTACAGCTttctcaatatatttttttcagtagaTCACTGTTTGTTTCCCCTTGCATAGTTATGCAAATTAAGAAGTCTGTCATCCCATCATATTGGCTAAACCTTTTTCACTTTCCTCACTCGAGAGATCATTCTAGTCTCCAAGGAGCAGCAGAAAAGACCTTGTGTAATTTGTCCTCAAAATGTAGAAGGCTGGGTAACTGTAAATAGGCAATCTGCATGCGGCTGAGAGTATtgacacccttcatttgaaacttaAGTTAGTAATTATTTGTCAGCTATAACTCCCCACCCCCTCATTTTCCCTCTTCCTTAAAGGACATGAGctattttcaattcaatattgTCACTCACGTtgtactaatactactactaatacatgTTTTGCATGTGTGGTAAGTTCCAGGCTGACAAGAAAATTACGATCTAAAATGGTATGTGCGCTATACTTCCAGTAGGTGGCAGACTGCTCACTTACAGTGTTGAGGATACCAGGGAATGGTTccgtttttttatttgttttttttaatatatataaatgtattgtaaattggaatccCATCACCTTCTAGATTAAATATCC

Function

GO: NA

KEGG:

id description
K25178 CCDC174; coiled-coil domain-containing protein 174

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017061 True 2594 mRNA 0.45 11 43280420 43286603
TU22218 False 627 lncRNA 0.37 1 43280237 43280863

Neighbor

gene id symbol gene type direction distance location
AMCG00017064 NA coding downstream 9268 43155639 ~ 43270969 (-)
AMCG00017062 nr2c2 coding downstream 124604 43131350 ~ 43155633 (-)
AMCG00017063 mrps25 coding downstream 151571 43127256 ~ 43128666 (-)
AMCG00017052 NA coding downstream 278305 43000826 ~ 43001932 (-)
AMCG00017050 tmcc1 coding downstream 343688 42919702 ~ 42936549 (-)
AMCG00017058 NA coding upstream 4722 43291325 ~ 43296289 (-)
AMCG00017057 NA coding upstream 11341 43297944 ~ 43301808 (-)
AMCG00017059 crbn coding upstream 57867 43344470 ~ 43364869 (-)
AMCG00017075 gnat1,LOC108271583,LOC108231337,LOC108424115,LOC103133111,LOC102214189,LOC100706288,LOC102793896 coding upstream 570890 43857493 ~ 43872095 (-)
AMCG00017074 LOC103360486 coding upstream 594675 43881278 ~ 43913423 (-)
G17910 NA non-coding downstream 44201 43235805 ~ 43236036 (-)
G17754 NA non-coding downstream 728464 42550325 ~ 42551773 (-)
G17755 NA non-coding downstream 730819 42544360 ~ 42549418 (-)
G17505 NA non-coding downstream 1674842 41601924 ~ 41605395 (-)
G17423 NA non-coding downstream 2035012 41244926 ~ 41245225 (-)
G18015 NA non-coding upstream 346618 43633221 ~ 43633422 (-)
G18066 NA non-coding upstream 550574 43837177 ~ 43891907 (-)
G18101 NA non-coding upstream 849585 44136188 ~ 44138542 (-)
G18156 NA non-coding upstream 1090394 44376997 ~ 44377221 (-)
G18164 NA non-coding upstream 1100840 44387443 ~ 44387995 (-)
AMCG00017051 NA other downstream 305804 42948991 ~ 42974433 (-)
G17842 NA other downstream 415621 42808711 ~ 42864616 (-)
AMCG00017014 NA other downstream 1341674 41936926 ~ 41938563 (-)
G17421 NA other downstream 2063006 41216651 ~ 41217231 (-)
AMCG00016959 NA other downstream 5221298 37875250 ~ 38058939 (-)
AMCG00017060 NA other upstream 19094 43305697 ~ 43308626 (-)
AMCG00017067 sumf1 other upstream 347167 43633770 ~ 43659602 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other upstream 1366852 44653455 ~ 44656905 (-)
AMCG00017105 srgap3 other upstream 1831687 45118290 ~ 45161137 (-)
AMCG00017158 NA other upstream 5202524 48489127 ~ 48494407 (-)

Expression


Co-expression Network