AMCG00017066


Basic Information

Item Value
gene id AMCG00017066
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43365827 ~ 43369383 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017066
ATGACGAAGACTAGGGCAATGAAGCAATATGCATCTACTCTGCGATTGGCTTTAATATTGTGCCTGCCCTTGCTTGTGGATCTGATGGAGACCAAAACAGATTACTATGAGGTCCTGGATGTTCCCCAGTCAGCCACAGATCGACAGATCAAAAAGGCTTTTCACAAATTTGCAATGAAGTACCACCCAGACAAAAACAAGAGCCCTGAAGCCGAGGTGAAATTCAGAGAATGTGCTGAAGCATATGAAGTGCTTTCCAATGCTGAAAAACGAAGCCAGTATGACCAATTTGGACACATGGCTTTCGAGTCCGACGATGATGGGACAGACTTTGGGCAGCAGTTTTTCACCTTCAACTTTGAAGACTTCTTTCAAGACATCCGATTAGAGGATGACATGGGCTTTGACATGCCTGGGGAAAGCTGGGGCTCCCAGGGAGAGTTTGACGATGGGCATGAGTATGGATTTGAATATGGGCATGACCACGAGTTTGAAGATGAGCATCAGCACGAGGAACAGAGTTTCTTAAATGGCGAGTTTGGCCACCATGACTTCTTTGAGTTCCTTAGAGATCCCTTTGACATCAACAATGCCTATGCTGAAGATGACTTTCAAACCAATCAGGAGGCAGAGCCATTTTGCTGGTCAGACAAACAAGTAGATGGCCGAACAGTGAGGATATGTGCAGGAGATTAACAATTGGAGGAAACTAAAAAATGTCTCTTGACTTcgttatttatataaatatttaataaattctATCGACTTCTAAATTACTGGCATGCTTGTCAGTCATTCTGTATTGTTTGAGATTGATGTAGCTATCCACATGATGCATTGACATCTGGGTGACAACATGCAGGGTATTATTAGTAATCTtctacataatttaataatcaaGATTGCTATTGAATAATTACGGAATTATGGAAGATGCTTATTATCCTCTTATTGTTGACTCATTTTTGTAATGTCTGGACAATGTCAGTTTCATATccttaaatatgattaaatataaaaggtAGGCAGTGCTTAGCAGTGCTTATATATTGAATCGGGTATATCCTTATCAACCAACAGGTGTGATAAACCTGAAAGATCAGTTTATGTTCAGTCATTTCTTCCTGTTTCTGAAACATGAAGTTCCACTGGTGGACACTTATCAATGCAGCAGAAACAGGAttttacacaattacaaaaaacataaagtaTTGGGTATTTGAAATTGCTAAATTGCTCAGATTTTCTATTTGGCCCAAATCTGAAACAATTGTAGGCACTGGCTGGTCCAAGCAAAAGCACTACTTGTTCTCACTCAACCAAACTGCTTAGAGCAGTCAGACTCCAAATGAAATGCAGGACACTAGAGGGGGGGGTGGTGGCACCAAGCTCCCTGAATGACGTGCATTTCTGTTGCATAAGAAACAATGgccacttgtttttttaaaggatctAAAACAAACAGCCAAATGGCCCACAAAGACAAAAGCAATatcaaatttgtttttgttaactcATTTAAATCTTTTGGTAAAGATTAATGTGAACTTTTCCCACTTCTTCATGTTTTATTcctcattaataaaaacaggtgTTACGCTACAGCACCAGTATTATAATTATGGTGTGGGAGGTATGTGTTCAGATGGGTCTGGGTCAGAAAGATAAAGACCTTAAaatttaaatcataaatgtatGCACCAGAATGGGGATTAATTGGGTTTTTAATGAGAGCTGAATAGGATACAGCCTCCTGTCCCTCAGTTAAGGTGGCCTTTTGCTTTCAATACATCCACTGCCAGGGCctgtggaaaacaaagc

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0033554 cellular response to stress biological_process
GO:0006281 DNA repair biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017066 True 1821 mRNA 0.40 3 43365827 43369383

Neighbor

gene id symbol gene type direction distance location
AMCG00017055 NA coding upstream 46514 43317690 ~ 43319313 (+)
AMCG00017056 NA coding upstream 50876 43308695 ~ 43314951 (+)
AMCG00017054 NA coding upstream 241424 43118218 ~ 43124403 (+)
AMCG00017053 NA coding upstream 268312 43095638 ~ 43097515 (+)
AMCG00017042 NA coding upstream 513533 42850719 ~ 42852294 (+)
AMCG00017065 NA coding downstream 2275 43371658 ~ 43384849 (+)
AMCG00017076 lrrn1,LOC102780565 coding downstream 175271 43544654 ~ 43546804 (+)
AMCG00017073 NA coding downstream 318677 43688060 ~ 43731559 (+)
AMCG00017072 itpr1,LOC102304252,LOC102779610,LOC102203222 coding downstream 399475 43768858 ~ 43773452 (+)
AMCG00017071 LOC102304252 coding downstream 412041 43781424 ~ 43795570 (+)
G17909 NA non-coding upstream 129791 43235820 ~ 43236036 (+)
G17882 NA non-coding upstream 253191 43053086 ~ 43112636 (+)
G17580 NA non-coding upstream 1387161 41976395 ~ 41978666 (+)
G17518 NA non-coding upstream 1623054 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 1648838 41713810 ~ 41716989 (+)
G17969 NA non-coding downstream 24910 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 100687 43470070 ~ 43470846 (+)
G17987 LOC107575789 non-coding downstream 130787 43500170 ~ 43500476 (+)
G18077 NA non-coding downstream 732643 44102026 ~ 44103399 (+)
G18084 NA non-coding downstream 747583 44116966 ~ 44201038 (+)
G17697 NA other upstream 968040 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 4111337 39239073 ~ 39254490 (+)
G17193 NA other upstream 4862195 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 8161595 35158597 ~ 35204232 (+)
G16550 NA other upstream 9264964 34100315 ~ 34100863 (+)
AMCG00017078 LOC106565757 other downstream 756831 44126214 ~ 44137931 (+)
G18192 NA other downstream 1285269 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 1579651 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 6002639 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 6033148 49402531 ~ 49403845 (+)

Expression


Co-expression Network