AMCG00017067 (sumf1)


Basic Information

Item Value
gene id AMCG00017067
gene name sumf1
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43633770 ~ 43659602 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017067
GGACAGAAGAAAGTAAGTGATCAGCTGACGAGTCATATGACCTTCAGCAAACATGGCTCTGCACACAACGAGGTGAGATGCCATGTCGTTCAAACACCACTGTAAAGATGTTAAAACACGCAGCTTTGCTATTTTTCGTGCTAGGTACAGTGTTTGCCTCTGATATCAATGCAGCTGGAGAAATGCCTCCTGCGTCATCAGAGCCGTCGGGACCGCTTTCTCAGCCCGATGAGGAAGACTCGGGCTGTGGATGCCAGTCTTTGAACAGAGAGGGTGTACAAGTTGAGAGACAAAGCAGTCCTTCGTTATCAAAACTTGCAAGTGCAAAATACACCAAAGAAGCAAACGAGGCGCAACCAGAGATTCACAGCAGTGGAAAAAATGCAGCTATTCCCAACCAGATGGTGTTAATTCCAGAGGGAGAGTATTTGATGGGTACAGATGAGCCGGCCATACCCCAGGATGGGGAAGGGCCAGCTCGCAGGGTGCACATTCAGCAGTTCTTCATGGATGTGTATGAAGTCAGCAACTTTGAGTTTGATACATTTGTGAATGCTACAGGTTATGTGACAGAGGCAGAAAAGTTTGGTGACTCTTTTGTGTTCGAGGGTTTATTGACTGAAAACGTAAAAAAGGAAATCTCGCAAGCTGTTGCAGCTGCTCCCTGGTGGCTGCCAGTGAAAGGAGCCAATTGGAGGCATCCTGAAGGCCCTGACTCCAGCATGTCAGATAGGTTTAACCACCCTGTTTTACATGTGTCCTGGAATGATGCCATGGCTTACTGCACCTGGGCCAAGAAACGCCTGCCCACGGAGGCGGAGTGGGAGTATGGCTGCCGCGGAGGACTTGAGAACAGaCTGTACCCATGGGGAAATAACCTGCTTCCTAAGGGACAGCACTACGCCAATCTCTGGCAAGGACAATTCCCAAATCACAACACGGGGGAAGATGGGTACACCAAAACCTCACCGgTGACGTCATTTCCTGCCAATGGGTATGGGCTATACAATATGGTGGGGAATGCCTGGGAGTGGACTGCAGACTGGTGGAGTGTCCATCACACCACTGACCACATGGACAACCCTaAAGGACCTGCTATAGGACGGGACAAGGTAAAAAAAGGAGGTTCCTACATGTGTCACAAGTCCTATTGCTACAGATACCGATGTGCCGCTCGCAGCCAGAACACTCCTGATAGCTCCGCCTCCAACCTGGGCTTCCGCTGTGCCTCTGACAAGCTGCCATGATTCGTGATGTCAAGAAAGTCATGCAGAGGGCGACGCTCTGCCAGGGAACTGTCTTGCTTTGCCTTACAGACTATGAAGAGCCCATGACCGGACCATATCCCCACCGTAGTGTGTAGctcctttcaaaacaaatgtcctAAAAGTGTTGCCACAACAAACCACATGAGAACTGGACCAGGAACTTCATAACACAGTGAAAGATACTCATCCAATAGCTGCTTATAATGAGGAACCTGAAATGAAGCACAAAGCAACTGTTGGTACAAACCAATACATTCAGCCTAGCACAAATGGTTTCACAATACACTTTTCTCATTTATCTCCAGACAGCCTATCAAGACTTCTTCTGAGCAGGAAAGATACATCCGAATGCACACCAAGTCTCCTCACAGATGAGTAAACCAGAGCTAATGCCCAGCTGCTGTGGCACGGTCTGTGTCGTGAGCATCCATGCtgttctcttctcctctccacACTTACCTGCCCTCATCATTGTCTGTTCTGCCTTCATATGCTTGTTTCTTGCACTGTCTTTTGGTGGTAATTCTTCTGATCATTCCTGGTTGTCTACTTGAGTGTCCTCTCTACCATACTGTAAAAACCCCTGACTGGAAACATAGAACTTCACTGCTGGTACATGGGAATGATTGTGTACCAGATTGTGTATGCCTGCTCAGGCAATAAAATGCTGGATGATACGGTTAAGATGTGAAAAGGACTAAGGAGTAAGGgcagaaatgaaaatgatgagAGTGACCTGTGAACTGTGAGAACATATGGGACAGACATTCTCTGTACTATTGTAATAAACAGCTTTCTTTTTGGGGTGTGCTGTATAAACTTGAAATCATGTTGCTGGGACATTCAATCACAGAAAGATTTCACTCTTCAATTTTGGCAACCCAATGTACGCTGAAAAACCAATAcagtgatttatgttttttcctaactttttttaaatagattgttttgtattcataatGTTGATATTGGAGATGTGGTGTATAGCTGTTCTGTAAATGGCCAAATCAGGGATTTCAGAAGAAATATGAGTTTAAAGTCCAAATATTCTATCACTGTACATCTATGGTCATGGTCATTTTCAAAATTGTCAGTACAACTCTCATCCTCATCTAAGATGCCAAACAGTAACGCAGCCGATTGGACTTAAAtgtagatttttgttgttttgtttaaatatgttcaGAGTACTGGACTAATTTCTTCTCACTGActatttttacttatttgtaaAAAGTGCTTTGACATGTATTAAATGCACTTTAAGGAGAAGACTCCTTcaatttgatgtgttttttaattccttatTTGTCACATACCCTTTGGTATGTGCCCTAAATTAATTGTTGTGTAGTTCAGGACAGGTGCAATGACCGGCACCTTGATGTAAGCCTTCTGAAGTCTTTATAGATGTGATTTTGCTTCAATAATTACTTCGCCTTATATCGATGTATGACGAAACCGCACTGGAGCGTGATGCAGAATGCAGGGTTATAGAATGTGGCAGACAGGATAAGCCAGGAATTAAGAAAAAACGTAGAAGATTTAAACCTGGTGCAGcatgtaattattttgcattctaATATTAAATCAGATTATTAATCTAAGGGTGTTTTTACCAtaacacaagcattacaaactGCTCTCACAGAAAACATCTCAAGACTCCACGCTGATGTGAGTTATCAAAAGTGTTTCTTGGCTTATGTGGTTTCTAACTGTAGATGCTTGAAGAAAACCTCATCTAAAGTGCCAATTTGCCACAACATTTCTAGAGCGGTTTATCACAAGTCTCAGTTCTC
>TU22342
ATGTGAGTTATCAAAAGTGTTTCTTGGCTTATGTGGTTTCTAACTGTAGATGCTTGAAGAAAACCTCATCTAAAGTGCCAATTTGCCACAACATTTCTAGAGCGGTTTATCACAAGTCTCAGTTCTCACTGCATCAATGTGACTCCTGGGCTGGTCTCCTTTCCCACTAAGTAATCTCTGTGGTAATTAACCCACATTTGAAagttaaagtaaaatgaaattaaaccagGTCCAGACAAGAAATGGGGCAGCTTCCGAGGAGCGTGCAAAGTAGGAAATTTGAGAATGATTATCGGAAACAGGGCAGATTCGCACCTCATGCAACAGGAGAGTATGATCAGTTACTATAAAGGAATACCCACAGGCCTGTTTTAATTGCACTTGCCAGCTGGGATATAAGTAGGATGTCCAATTCTTCAACACTTTGTACTGGGACACATTGTgacacaataatacattatgtatatatctaCACAAAACACACGATGTATATTATAGAGAAGCTAAGTGGGTAGTCTGGTCACAATGTCAAAAGGATTACTTTTACAATGTCAACGTTCCTACCATCATGTTGGTTAGTTGTCAAACTGGTGTGCAGGAGCCTTTGGGgggcaggaaaaataaataaaagccaggACAAATGTCAGTTCTCC

Function

symbol description
sumf1 Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in mucosulfatidosis. Orthologous to human SUMF1 (sulfatase modifying factor 1).

NR:

description
PREDICTED: sulfatase-modifying factor 1

GO: NA

KEGG:

id description
K13444 SUMF1, FGE; formylglycine-generating enzyme

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017067 True 3070 mRNA 0.44 9 43634296 43659602
TU22342 False 653 lncRNA 0.40 1 43633770 43634422

Neighbor

gene id symbol gene type direction distance location
AMCG00017059 crbn coding downstream 268901 43344470 ~ 43364869 (-)
AMCG00017057 NA coding downstream 331962 43297944 ~ 43301808 (-)
AMCG00017058 NA coding downstream 337481 43291325 ~ 43296289 (-)
AMCG00017064 NA coding downstream 362801 43155639 ~ 43270969 (-)
AMCG00017062 nr2c2 coding downstream 478137 43131350 ~ 43155633 (-)
AMCG00017075 gnat1,LOC108271583,LOC108231337,LOC108424115,LOC103133111,LOC102214189,LOC100706288,LOC102793896 coding upstream 197891 43857493 ~ 43872095 (-)
AMCG00017074 LOC103360486 coding upstream 221676 43881278 ~ 43913423 (-)
AMCG00017077 NA coding upstream 442416 44102018 ~ 44125909 (-)
AMCG00017085 NA coding upstream 797176 44456778 ~ 44458554 (-)
AMCG00017086 gnai2b,LOC108271854,LOC107723915,LOC107587570,LOC107696468,LOC107595419 coding upstream 824009 44483611 ~ 44503250 (-)
G18015 NA non-coding downstream 348 43633221 ~ 43633422 (-)
G17910 NA non-coding downstream 397734 43235805 ~ 43236036 (-)
G17754 NA non-coding downstream 1081997 42550325 ~ 42551773 (-)
G17755 NA non-coding downstream 1084352 42544360 ~ 42549418 (-)
G17505 NA non-coding downstream 2028375 41601924 ~ 41605395 (-)
G18066 NA non-coding upstream 177575 43837177 ~ 43891907 (-)
G18101 NA non-coding upstream 476586 44136188 ~ 44138542 (-)
G18156 NA non-coding upstream 717395 44376997 ~ 44377221 (-)
G18164 NA non-coding upstream 727841 44387443 ~ 44387995 (-)
G18219 NA non-coding upstream 1139852 44799454 ~ 44829026 (-)
AMCG00017060 NA other downstream 325144 43305697 ~ 43308626 (-)
AMCG00017061 NA other downstream 347167 43280237 ~ 43286603 (-)
AMCG00017051 NA other downstream 659337 42948991 ~ 42974433 (-)
G17842 NA other downstream 769154 42808711 ~ 42864616 (-)
AMCG00017014 NA other downstream 1695207 41936926 ~ 41938563 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other upstream 993853 44653455 ~ 44656905 (-)
AMCG00017105 srgap3 other upstream 1458688 45118290 ~ 45161137 (-)
AMCG00017158 NA other upstream 4829525 48489127 ~ 48494407 (-)
AMCG00017178 NA other upstream 5827595 49487197 ~ 49494144 (-)
AMCG00017232 NA other upstream 7524629 51184231 ~ 51212373 (-)

Expression


Co-expression Network