AMCG00017068


Basic Information

Item Value
gene id AMCG00017068
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43806964 ~ 43814318 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017068
GCGGGAGCCGGTGACGTCAGCGGCGGGGCTCTGCTGCTCTCGGCGGCCATGAGGAGATCAACGTGACTCCCCGGGAACAGCCCGCTCTCCCGCGGACACATTGCCAAACAGGTGCCGGGGGATGGGCAGCGCGGAATAGCATCGTGCTGCCAGGATCGCAGCGAGATAAGATGTCGGTAAACACTCCCGTCCCCGGGATAAACACTTTGCAAATGCGCAATGCTGCTGGCAGGCGCAGCAGCTCTGAACAGTGCCGTATTAACCGATTATTCACCCAAACAGTGGTCTCATACTCGTACAGGCTTTTTTAACgtacatatttcaaattgaagGTGTATAACGTCATAGATTTTTCAATAAGAcctacccccccccctccgctCACCAAATTCATTATAGATTTATACTTGAATACATGCACATTCGATTACTTATTTCTGACTGTGCCACGATATTTTATGAACTGTTGGTAGTGTGCTGTTCTTGTTCAGAATGCATTGGTAACCTTTAATTGAAGGCTGTTAAAAATGATGAAGCTGAAGTTAGTATTTGCTCCCATTACCCTGTTGGCAGGGGGTGCGATTTGATTTTAGCAGAATGTAAGGCAGAGCATCAGATACTGCTCATATAGATGAAAACCATCGTAAGCAAATCTGTAGCATTGAGACAACTGAACTATAATATAAATTGTGTAGCTGTGTGATATTTTGGTATGCCTATTTAAATGGGAATAGAGCCATAATGTGAATCATGTGTATTGTGGTTGTTGTACTGTATTAGTGCACTGTTTTATTGCTCTCattttgaaagtcgccctggataaaggcacGATACAGAGCGTTTAGTCCATCCCAAATGGTGACATGAGATTTTCACAGAACTGTGGTTACGTAACGTTGGGCATATAAAAATGACGCCTGAAAGacataaatgcaataaatacacacaatgcTGGCTTAGCATACTAGCCTATATTAACCTTAAAAGAGCTGCAGAGCTGGACCCGGTCAATTGGCACGTACGCACGGACTGCTCTTGCGTGGGAATGCAGTCCAGAAGGTTGCGTCACGCAGCCCTGAAGTTCAGTAGTCGTCTGCAGTATATGCTGTGAACCGGTTTTACCCATTGTCATCGAGCACACTACATGTGCAATTGTCTGGATGAAGTTTTATAATAGTAATGTTAGAATGCATTAGGTGCAAAATAAGAGGGGGATCTTAAAGGCGCGCGTCTCTGTATTagctgaatatataaataagcaaattgTAAATTCTCCTTATTTTAATGGCAACAAAGTAATCGCGCACAACAACATGCCTGAAGTGATCGAGTGAAGAATAGTGTTACATACACCGTTCACATTCACACTCAATTAAATGCGTGTTGTCTCTAGAATAATCGATCACAGTTTATCCCAGATAGCAATATTAggttgctacaacgttgtgtgttagctggggtgCACACTAGGGATACATGTATAAAGTTTTGGGCTATACCCGTTAACCAGCtatattgtttcagtttttaaattgcatttcaaatgtactgCATGACTGGGAAGTCCGTAATCTGACTCGCGGGAGCGAATCGGAggtacctgcctaaaacatatTAAGGGTTAGTCTGCCCTATTTTCTGTGTAAAACCTCTTCTGTGccgaagaaagaaaaaaaaaaaccaaaagcCTGCACGTTTCCAGCCTACAGATTGTTGTATGTTGCCTACTAATAGTTTCAAGAGGAGCATGGAAGTACACGGGACCCACATGGTGTGACGAGGGTGTAACGTTGGCTTGCAGATCCTccttaacaagaaaaaaaagcaagagaaGGAGGGTTGTTCTTAGTTCAGATGAAAGCGCTGTCCAACACGTGAGGCTCATGTGACGGAGGCAGGTCAGTGTCGGAGCCGGAGACGTGTCTGCAGTCACAGGGTTTATTTAACACGTAgacccatccatccatccacccaCACGCACGCATTTAACCCAGCCTGCAGCGCCGCACTAGTGCCGACTGCGCTCGGATCTCCGGCTGGCAGCAGCGCGATCGAGCACACAGCAAAAAGGACAATAAGTGCAACATCTGAAGAAAAACTAGAAGACGGGAAATCAGCGTTGACAGCGGcagaacattgttttaaaaaatatatatatatatatttaaaatccatatCCAAGACATTATATAGTCTGTGCTTGGTTCCACAAAATCCTGCTTTCTCGGTATCCTCGGGTCTATTGCTAATTGTTTTTTCGAAAAGAAGGAGCATGGAAAGGATTACAACAGCCCAGCCACCTCCTTGTATGGCAAAACACCCATCGCTGGACATCTCTGAAATGCAAGGAATGGATTTCCCAATGTATGTGTACAAGCCCAGAAGGGGGATCAAACGCGGGGAAGACAGCAAGGAAACTTACAAGTTGCCTCACAGactaattgaaaagaaaaggcGTGACAGAATAAATGAGTGCATTGCTCAACTTAAGGATTTGCTGCCAGAACACCTTAAACTTACTACTTTGGGCCATTTGGAAAAGGCAGTAGTTTTGGAACTCACCCTGAAGCACGTCAAAGCCCTGACAAGCCTCTTGGAACAGCAACAGCAGAAGATAATTGCATTACAGAATGGATTGCAAGTTGgtgACCAGTCCCCTCAGAGCCCTGACACAAATGAGGAAATGTTCCGTTCCGGTTTCCACATGTGTGCCAATGAAGTGCTCCAGTATCTGGCCAACCAGGAGAGTGGGCGAGACCTGACACCGTCGCACATGATCAATCACCTCCACAAGGTAGCATCTGAGGTCCTGCAGAGCTCGCCCAGCCCCCGCACGGAAGAGCCACCCCTCAAAGCACATGACCATAAGGAGAAAGCAGCCAGCTTGCAGCCCAAAAGCTTTGAGGGTCCAGGAAAAAACTGTGTGCCCGTCATTCAGAGGACTTATCCCCAGGGGAGCGGGGAACAGAGCGGCAgtgacacagacactgacagtgGCTATGGTGGCGAGCTGGAGAAAAATGACTCCAAAACAGAGAGTGCGTATTACAGCAAGGAGAGCCAACTGAAGTACACTTTAGCAGAGAGAATGGCAGGCTCCATCAAGCAAGAAAACGATGATCCGCCATCCAAACGGATCAGGACTGAGTCTTCAGAGGATGAGTCCCTCTCTGGTGGAGAGATGTTGGGAAATCATAGCAGTTTTCTTGGCTTTTCTCCACACCAGGCCCCACTCTGCATGCCTTTTTACTTGATCCCACCCTCAGCCGCTGCTTATTTGCCCATGCTGGAGAAATGCTGGTACCCGGGGGCGTTGCCAGTCTTATACCCTGGGCTTTCAGGATCAGCTGCCACAGTCACAGGAGGCCTGAGCCCCGAGAAGCACCAGTCTTCGCTTCTGATGTCCCCCAGAGTAGGCTCCCCTGTGGCGGCTCAGACACCCATGGATTCCCCCGCCCTGCTCCAAGCTTTAAAACAGGTCCCTCCTTTGAACATGGAGTCCAAAGACTGAGAACAATAAAACCCTGTACTCTGAATGTTGGTTAACTACTAAGGAAGGAACAGAACAGCATGAAAGAAGTCCTCCTGGCAGCAGCAGATGTTTTTAGCCCCTTTCCTCCCATGAAAGCACACTGCCGCGCATGGAAGCCAAGTGGCCACCACCTTCTCAGCTTAACgctgagagaaagaaagaggagtCAATGTTAGTGAGGGTTTGTCCACAACGGTGTTGAGACAGCCTGTGAGGCCGCACCAATGAGACATTGTGaagatgatttattttattttatttttaatgaatctgAAGGCCAAAAAAAGTACGTTGGTTTAAATACCGGAAGTTTCCTCTACCCTTCAGTTGAATGTTGAGCAACGTCGAGAATGTGAAATGTGGATAGCCCCTAATTATCAGGACCTGCCCTTTGCAAACACACCATGGTTGAATGTAAAAACCCTGTAGATGCTGCTTTTAAAGCTTTTACATGCTGTAAATGTATTACAGGAGGTTATCTACTACTTGTATCAGCAGCTGCTGAAAAGGAAACAGACCGTCCGTTTGACCgattattacataaaatattaacagtGATGTTCCCCCTACTTCTGCTGTTTGTCTGCTTTAGTGGGCCAGAGCAGTCACTGATAATTGGCAGTTGGGGGATATTCAACTGCGCTACCCCCATCCACCACCCCCCCTTCGCCGCCCCTTCCTCCAAATTacacttgcatttttatttttattttaaagctgaagactatttttgttttttcataccTTGTGTGCAACATCCTTGCAGATGGGGAAGTGGATTTGCACATGTGCAGATTAGTTTTTAGTTTGCAGTTAATTACCATTGTGCAGCAGGTGCTaacctgaaaatgaaatggtaaTGCAATctcttgtaattattttgtttatattatgtgTACATCTCTATTTTTGATACAAGTCCCACTGACATTACCATTATGACTAGAAGGCGTTTTAGTTGTTcaacaaaacatgtacataGCACTGTGCTAGCCCTGATTTGCatactttttaatattcatttctGGTCAAGTTAAACCTGTTCTTTGTTCATGCTGTTGCCTTTACTTGTTGAAGCTGATAAACTGATATCAGAtgttcattaaatgtatttgtataaatactGGAGTacagtaaagaaagaaaagtgaatgtaatgttttaaacagAAGATTAGTTTTGTATAGAAAGAGGTActtgagatttttattttgggacCTACAAGAAGGTTGTCTGATGTACATATTTTGTCTATAAAGTAAATGttgatatacattatataaacgtattaataaagtatttttttttcatgtggaa

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K03729 BHLHB2, DEC1; class B basic helix-loop-helix protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017068 True 4849 mRNA 0.44 5 43806964 43814318

Neighbor

gene id symbol gene type direction distance location
AMCG00017071 LOC102304252 coding upstream 11394 43781424 ~ 43795570 (+)
AMCG00017072 itpr1,LOC102304252,LOC102779610,LOC102203222 coding upstream 33512 43768858 ~ 43773452 (+)
AMCG00017073 NA coding upstream 75405 43688060 ~ 43731559 (+)
AMCG00017076 lrrn1,LOC102780565 coding upstream 260160 43544654 ~ 43546804 (+)
AMCG00017065 NA coding upstream 422115 43371658 ~ 43384849 (+)
AMCG00017069 arl8ba,arl8b,LOC107095653,LOC103137213,LOC107552649 coding downstream 11011 43825329 ~ 43841590 (+)
AMCG00017070 edem1,LOC102794187 coding downstream 29096 43843414 ~ 43855324 (+)
AMCG00017079 NA coding downstream 332394 44146712 ~ 44160471 (+)
AMCG00017080 camkv,LOC106582757 coding downstream 550288 44364606 ~ 44371508 (+)
AMCG00017081 NA coding downstream 558570 44372888 ~ 44385986 (+)
G17987 LOC107575789 non-coding upstream 306488 43500170 ~ 43500476 (+)
G17988 NA non-coding upstream 336118 43470070 ~ 43470846 (+)
G17969 NA non-coding upstream 412465 43394293 ~ 43394499 (+)
G17909 NA non-coding upstream 570928 43235820 ~ 43236036 (+)
G17882 NA non-coding upstream 694328 43053086 ~ 43112636 (+)
G18077 NA non-coding downstream 287708 44102026 ~ 44103399 (+)
G18084 NA non-coding downstream 302648 44116966 ~ 44201038 (+)
G18125 NA non-coding downstream 562675 44376993 ~ 44377228 (+)
G18127 NA non-coding downstream 573125 44387443 ~ 44387949 (+)
G18186 NA non-coding downstream 809049 44623367 ~ 44714164 (+)
G17697 NA other upstream 1409177 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 4552474 39239073 ~ 39254490 (+)
G17193 NA other upstream 5303332 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 8602732 35158597 ~ 35204232 (+)
G16550 NA other upstream 9706101 34100315 ~ 34100863 (+)
AMCG00017078 LOC106565757 other downstream 311896 44126214 ~ 44137931 (+)
G18192 NA other downstream 840334 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 1134716 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 5557704 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 5588213 49402531 ~ 49403845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004259 bhlhe40 coding NC_007122.7 CM002895.2 35759652 ~ 35763323 (-)
tiger barb (Puntius tetrazona) G80509 NA non-coding NC_056709.1 CM032078.1 10321670 ~ 10322338 (+)