AMCG00017069 (arl8ba,arl8b,LOC107095653,LOC103137213,LOC107552649)


Basic Information

Item Value
gene id AMCG00017069
gene name arl8ba,arl8b,LOC107095653,LOC103137213,LOC107552649
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43825329 ~ 43841590 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017069
cgtcaTTTTGTTGAGCACTTGTTCCTGTAAACCAAACTTGCCCGTCTTCCCTTTGGAGGGAGCTCTCCGTGCAGTTCACAGTCATATGACAGAGCGCACTTCCTGCAGACACTTTGCACTCCTGGCTGGGGCTTAGGAGACACAAACAACACGGTGTCCCAGGTTTTGGTCTGGTTGTCTTTCCCACCTCAAGATGCTGGCACTCATCAACAGGCTTCTGGACTGGTTCAAGTCCCTCTTTTGGAAGGAGGAGATGGAACTGACGCTGGTGGGACTCCAGTACTCTGGGAAGACCACCTTTGTCAATGTGATAGCATCTGGGCAGTTCAGTGAAGACATGATTCCGACGGTGGGGTTCAACATGCGAAAAGTCACCAAAGGCAATGTAACAATAAAGGTACTGATCCCACACAGTTgatgaaaagcaatacattaagTTTAGACCAGGCAAAGGCAGCAAGGAAACCTagaaacagcagaaaacaaattgtGGCTACATACAggattatttgtaataaatttaGTACTGTAGTTCAGGAGCTGTTTTAAAGTGAGTGTTTTTACTTTGTCTTTGATTAATTTACATGTATTGAATGAAACCAGGATACCTAGTTTGGTCAGAAGGGACTGTCTGCATCcttaaaagttataaattggGAGTTTGGATTGCTTGCTCAACCCACACTGCAGCATTACAAGTGTACTTCCTTAGTGCGGGGTGAACTCTGTTCATGATTAATAAGAGCTATGCTTTCCAGCTCAGTGGAGTAGCACTGTTCttggaattattatttattttatttattttgaattaatttatttaagcaCCAACAACTAATGTACACCTTAATTTCAGTGCTACTTATTGTAAGTTTATTGATTCAGATtgttcatgtatattttatgtaaagaaGGACAGAATTCATATTCAACATTAGATGAAGATATTCtacaaattaaattgtcttCTGTTTCATGAGTAAGTTTGATCAGCCAGTAAATGCAGAATTATGCTAATTTATGGCTGTGATATTGGATGCAAGTCATTGGCATTTATCCTTAACTATTATGTCTGTTTAACCTTATCCATTAACTTAACCATTCCTGTCTCTCTTCTAGGGCTGGAATTGACCCTTGTCCTTAATCCCACATAGTTATGTGAGCAGCAGTTCAATAGCAATTGTCTTGTAAGAATTGATCAGGTGCTCTGGTTTAGCCCACTcttgtttcttaatttaatcTGGGGGTCTTTGAATTAATATGTGTGGAAATATTTGGGGCTGccatggaataaaataatggtCTAAAATGTTATTACAGGGCTGATGTAGTCTGATCACTGACATCAGATCAGTCTTGCATCTAATCTGAGTGGCCTATGTACAGGGTGGATGTGAGATGCTATTTTCGACTCCCACCTTCTGGGTACAAAATAAAGTCttctgtttggaaaataaatctacagTTTTGAGAGTTGAGGACCTCTTTGTGTGTCTCCTTTGCGATCTCAAATTGTAAACAACTCAATGACTTAACATTGAACTGGACAGCCTCCACAGACTTTCTGAACAAAACctttaacatgtaaatatacAGCCCTAATACCATGATTCCCAGAGTGGATGTACTTCaactattttcaaatttgtaCCTTTGCAGCACGTGCCATCTAGTGGCTAGATAAAAAAATGCTCATTATTTGCACTTTGAGAGATCAAGGTAGTTTGCACTTGGAAACTACTATTCCTAAATGTCAATGGCAACAATAAGGTATTATTGGATTAAATGCAGTATTGCTGTGTGGGTTCTACAATAAGCTGTCAAATCTAGAATGCCttaattatacatgtatagcttttttattatttatttattaattaatttattcatttcccAGATTTGGGATATAGGAGGGCAGCCGAGATTCCGAAGCATGTGGGAGCGATACTGCAGAGGAGTCAATGCTATTGTTTATATGGTAGATGCTGCAGACCGTGAAAAGATAGAGGCATCCAGAAATGAGCTTCACAACCTGTTAGACAAACCACAATTACAAGGAATTCCTGTGCTAGTTCTTGGAAACAAGAGGGATCTTACCAATGCTTTGGATGAGAAGCAGCttattgaaaaaatGAATTTGGCAGCTATTCAAGACAGAGAGATTTGCTGCTACTCAATTTCTTGCAAAGAAAAGGACAACATAGATATCACACTGCAGTGGCTTATCCAGCACTCCAAGTCCCGGAGGAGCTGAGGCCTGAACCCCCCGCCCTCGTCCTGTCGGCCATATCAATCCCAAAATCACCCTGCTCACTCTGTGATGACGTAATCCTTATTCACGACTCACTGTCTCTCTCGTAGCCCCGCTCTTCATTTCCCTCAAGGTCCATTTTGTGTACTGCTAAAGATTGTGTAACCGTCGGTAACAACGACCCGCTTAACATCCTAGAGTTGTCATGATACTGTAAGCGAAAGCTAGAGAACTGTCACACGTTGGTAAATGTAGATCAGCCCAGCATGTCCTATGCCTTCACAATGCCAAATCACaggtatttttcatttttaaatacacctgtGGAGTAAGAGGAGTTCTGCAGCAGATACTTTTATTTGCCAAGTAGATAACTTTACATTCATCTGATATTTTTTCTGAAGAGATGGGAGCTATATCCATACTGTATGTTGGGCAAATTGAGTTTTTGTTCCCTCTCCTAGCCACTGAATATTAGTGTGTTTACAAGTGATTCTGCCAATTTAAATCTGGTTATGTGAGGTTGTACTAATTTTAGGAAGTTTACATTTTGGGTAATAACAAAACAAGTTGTCTCTGtacaggtaaaaataaataaatatatatatatatatatatatatatatatatatatatataataatgtgataCATTTTATCATAGTCCAAAACTTTTCCAACTGTAGCAAACCTTTGGAGTAAGAAAACCATTCAGCTTCTGAAAAGATATATCACAATGTGTGGTTTGCTGAAGTCAACATATATATCTCGGAGTTTGAATGTATCAGATTTAAAGATTAAAGATGTATGTAACTCTGGAGTCTTGCAACAAGAATCCTGTGTAATTTTCTAGTGTCAGTTAAAACCTGCAATGCTGTTTCTGTCTACTAGAGTGGTCTGCAGAGTTGAAAGTGCCTTCTGCAATAGCTCTGACTACTGGACCAAAACAGCATTAGAGCATGGATTATGTCTGGGGTACAAAAAAGACTAAGTACACATATAAAatcctgaaagaaaaataaacaggctTGCTTTTTAACCTGGATGATTGTAACTCTTGTGATTATCATGATGCTTGATTGGTCAAATTCACTGTGGGTCTCTCTGTGAAGCAGTTAAGATATTATGACAACTCTAGACATTCCCCCACCTTATTtaatgtacttgtgtaaatATGCTTAAAAGAAGAAGtgtatgataaaatgttgaaGACAGTGATGTAAAAGCACAAGGAGGAGTCAATTAAATTATGCGAATTGTAGCTTAGTTTgtataaaaagaagaaatggGGTTTGTTCTCCTGCAGTTCTCAGAacacattttgcactttttttctttttgttttaatctacaAAACATGCCAGTAAGTGAAAGAAGTCACAGATGTTTCCATACTATTAACAGCATGGTTTAAACTGGATTTCTTGTACCCTGGAAAAATCTATGCTTGTAACCCCCCACATGTGTGTCAGAATGTGCTTTGGGAAATTCTGTAGGAAAAGGGTGCCGCACAATGCCTTGTTGTCTCTGACCTGGTTAACAGATAGCCACAGGGAACTGTTTGGGAGTTATGTTGTTCACACTATGCCTTACTGAAAAGAGATAATATTGCATGTTCAGTCTGTCACTGGGACACTGGATTTGGTACCCTTCTCCCATAGAATGACTCATTGATGGAAGAGATGGACATCATAATCCAATGCCAAATTGATGTATGTTTCATAAACGTTTCCccttaaattaaactgtttagGTAATACCTGTAATAATTGGTCACATGATGTGGACCACTTTCTGTTCATCCTACCGATTTTTATTTACCAGTCttaaacatatttgcatttatatctTTATTAGATTGCTGGTGATCTGTGCCTCCCCACATCTTAgcattttccttgttttgaTATGTTCTTGTATGCACATAATTGTCTTGAATGAATACATTGAAGTGGTCATCTTTAAACCTTGCCTCTCTTTACAGAGCTTGTGTGGCTGGGAAGTTCTATTAGGAAAAGTGAAGCCTGGTCAGGCAGCTTTGGTAATttctttgccattttttttcttcctagaGCTCCGTAGAACAGTATTAGATACCTCGCTGTCCCTCatcaacaaaaacaccaaaaaacacCCATGAGGatctattgaaataaatattacccaattgTAACAtctttttgagagagagagagaggccaaaGACAATTTTCCAGTTGGTGTTTGTGCTAAGAACGATCTCAAAATGACAAATCAGTGGCACAATTCCACAGATGCTatgagaaattattttattgggttttcttttgttatctTGGGATGCTTGCCAGTTATATTTCAATGAAATTGGTCCTGAGCATTGTTCTTTTCAGtcccaacatttttttttatccagtcAACTTCTTTAAGATGTGACATTCTTTTCCTTGAAATATTTCTCCATTCCCCTCAAAACTACCTCAAAACAATTTCAGCAGTGAAACTTGACTTACTTGAGTCAATTAGAGTAGGCACCATCTGTAGGGTATGGCATGATATACGTTTTGTATGTCTGAGAAAATCAACTTGTAATTTGAacacaattaactggattaaatatcagtaaatgttttaattgtaatgggTGTAATTGGTGCAgatggaaacaaatgaaaatggttaCTGCAAATGAAGTAGTACTTGAGTTATAATGGTCAACCTCCATTATTACTAAAGCTTTTTCTCATATTCTTAGCCATGTGGACAGACTCATATTgtaccttttatttttcaaaactttccttctttttcaaTTCTTGAAATTTGGTTGGTTTTCAGTCTGCTCTGCCACAGTGCAAAAGTGAGGAGAAAGAACAGGGAATAGAGAGAAATGTCCACCCCTGCCACAAGGAAGGGGAATACCAAAAGCTGAGGTTTTGAAATTTACTACTCACATCAATTAGACATTTCATGCTCATTATAAGTATTGCTTCAATGTAACGTGCttaaaaaagattataaattaaattaaattctcatTATTCAGGCCACATAATATTCATCTTTAATTCTAATGGCAATTTGtgatacattttgcattaaacgCTATTAGACCTGAAACCTTGCAAATATCCATATAGCAGGTATTGTATGATCTGTCCCCAGCTATGTCAGTGTGCCTCAATATCTATCCCAGGCCTTTTGAGCTCTccattgtttaattacattctTCAATTAACAAAACATGTGCATTTAGGCCATTTTAAATGTCAGCTTTGGATATTAATACCATTTAAAATTCCCTTTGTAATTGAAAACATGACACTTTTTAGGAGCTGGAAACAATTTATATAAGAGACTGAGGCCCAGTATTCATGTTCCAAGATTTGTAATGTGGAGGATCTGCCTGCAGCCTTCTGCCTATTTTAAGGCCTCTGCCATTTACGCCCTCAGTTCTTATTTCAGCTATTAACCTTCCAGTTGTGCCAAAATGTGCCATTTTGTGGTGTAGGTAGATTCCAGTGGATCCCCCCCtaccccccaaacacacacacacagtcttgtCTTTATTAGATTTGAACCTAGGAATGCAAAATGAACTCACTGTGAAACCTGACcttctaaatataaatgatgcTCCAGTATGCAAGCAGGCCTGTTTCAGGAagacatgttaaaaaaaaaaaaaagatggaaaacaaattaaccatAAAACGGTGAGAGGGCAAGCACATGTTCCCGCCCcaccctctccctttccctaCAAGGCAAAGTGATGAAGCCAaaagaatacaaagaaaatTGGGGATGAGGGATTGTACATAACTGTGTTACTGCCTTGCCATGATAAACACAGAGTTGTTTACCATGATTCTTCTGACTAGTTAAAGCATGTTGCCACACACCCTATACTGATTGTAGGTGCTTTTAGCATTATCCAGCAGTTACCAGCTACTTCCTTCTTACTGCTCTCTACAGTTAAAGTGGCAAGGTTTCGCTTTATTTTCTATCTATCTGTGCTGCATTGTGCCtaattagacagaaaatggATGTTTATATGCTTTCTGTGGGGACCAGgtcactatttatatatttaatcaggGTTGTAGGTAAAGCTAATGTATTTGATGTGTTGATCTACTAACTGCTTTCAGCATTTTATGGTATTCAGACACTATTATGGAAAGAAAGATGTGTTTTCCCTGTGCATTAAAATTGCAtgtgtaaacaaaaaacattcaattacaaACTTTGTAAATAAGgaaaagtgaacatttttattgAGGTGAATGTTCTTGTCtgtgtttattgcatttgtttttttccccctcagtgACTGCTCAATAAATTGAGTTTTTGAGGTTGATTTTGAGACCTCTAAGACATAGA

Function

symbol description
arl8ba Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in autophagosome-lysosome fusion; late endosome to lysosome transport; and lysosome localization. Predicted to act upstream of or within cell division; chromosome segregation; and protein transport. Predicted to be located in lysosome. Predicted to be active in lysosomal membrane. Orthologous to human ARL8B (ADP ribosylation factor like GTPase 8B).
arl8b Enables guanyl ribonucleotide binding activity and tubulin binding activity. Involved in several processes, including calcium ion regulated lysosome exocytosis; lysosomal transport; and vesicle fusion. Located in cytolytic granule membrane; midbody; and spindle midzone. Colocalizes with lysosomal membrane.

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 8B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007059 chromosome segregation biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0005819 spindle cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017069 True 6618 mRNA 0.37 6 43825329 43841590

Neighbor

gene id symbol gene type direction distance location
AMCG00017068 NA coding upstream 11011 43806964 ~ 43814318 (+)
AMCG00017071 LOC102304252 coding upstream 29759 43781424 ~ 43795570 (+)
AMCG00017072 itpr1,LOC102304252,LOC102779610,LOC102203222 coding upstream 51877 43768858 ~ 43773452 (+)
AMCG00017073 NA coding upstream 93770 43688060 ~ 43731559 (+)
AMCG00017076 lrrn1,LOC102780565 coding upstream 278525 43544654 ~ 43546804 (+)
AMCG00017070 edem1,LOC102794187 coding downstream 1824 43843414 ~ 43855324 (+)
AMCG00017079 NA coding downstream 305122 44146712 ~ 44160471 (+)
AMCG00017080 camkv,LOC106582757 coding downstream 523016 44364606 ~ 44371508 (+)
AMCG00017081 NA coding downstream 531298 44372888 ~ 44385986 (+)
AMCG00017082 NA coding downstream 547322 44388912 ~ 44411339 (+)
G17987 LOC107575789 non-coding upstream 324853 43500170 ~ 43500476 (+)
G17988 NA non-coding upstream 354483 43470070 ~ 43470846 (+)
G17969 NA non-coding upstream 430830 43394293 ~ 43394499 (+)
G17909 NA non-coding upstream 589293 43235820 ~ 43236036 (+)
G17882 NA non-coding upstream 712693 43053086 ~ 43112636 (+)
G18077 NA non-coding downstream 260436 44102026 ~ 44103399 (+)
G18084 NA non-coding downstream 275376 44116966 ~ 44201038 (+)
G18125 NA non-coding downstream 535403 44376993 ~ 44377228 (+)
G18127 NA non-coding downstream 545853 44387443 ~ 44387949 (+)
G18186 NA non-coding downstream 781777 44623367 ~ 44714164 (+)
G17697 NA other upstream 1427542 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 4570839 39239073 ~ 39254490 (+)
G17193 NA other upstream 5321697 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 8621097 35158597 ~ 35204232 (+)
G16550 NA other upstream 9724466 34100315 ~ 34100863 (+)
AMCG00017078 LOC106565757 other downstream 284624 44126214 ~ 44137931 (+)
G18192 NA other downstream 813062 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 1107444 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 5530432 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 5560941 49402531 ~ 49403845 (+)

Expression


Co-expression Network