AMCG00017070 (edem1,LOC102794187)


Basic Information

Item Value
gene id AMCG00017070
gene name edem1,LOC102794187
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43843414 ~ 43855324 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017070
caGGAACAGTGTGAGACAATCGTGGGGTCAAGGGGGAAGCGCAGCGACAcaactttttgtttcttttaaaaccaGTTAAATCGGTGAATTATGATTTTACAGGCCGGGCCAGAGCAAACATGCAATGGAGGTCGATAGTACTTGGTCTGCTCTTGTTGAGACTGGCCCTAAGCTGTGTACTGTGGTTCGCGTTTGGATTGGGACCTAGCTGGGGGTTTTATCAGAACTTCCccatacatttcaatttcaattcgcAGAAAGTGGACACTTTCAAAGACGGCGAGACAGCGGAATCTCGGACTGTGTGGCTGAAGCAGCAACATGGGATCGGATGTGAAAGTAAAGGGACGTGTCCGAAGAGCAGTGACAATGCACAGAAAACCCCCTATAATGTATTTAAGGGCAGCGGGGACGATTACGCCAAAAAATACAGTTCCTTCCCACAGCCACTGAAGGCGAAGATGAAGGGTATGGCCAaggagatgttttattttgggtaTGACAATTACATGAAATACGCGTTTCCCGAAGACGAGCTCAACCCAATAGACTGCGAGGGTAGAGGACCCGACGTGCTTGACCCGTCCAACATCAATATCAACGATGTCTTGGGGAACTACTCTTTGACACTTATTGATACGCTTGATACATTGTTGGTAATGGGGAATGTTTCTGAGTTCCATAGAGCAGTGAAGCTTGTGATTGATACTGTCTCATTTGATAAAGATTCAACCGTGCAAGTGTTTGAAGCTAATATAAGGATTCTTGGCAGCCTGATCTCTGCACACATCCTCCTGACTGATGCCAAACAGCCATTCGGAAACGTGGGACTTGAGGATTATGACAACGAGCTCCTGCACCTTGCTCATGATCTCGCAGTCCGGCTCCTGCCAGCGTTTGAGAATACCAGCACAGGGATCCCCTATCCACGGGTCAACCTGAAGAATGGAGTTCCTCCCAACAGCATCAATGAGACTTGCACAGCTGGCGCTGGATCCTTATTGGTGGAGTTTGGGATTCTCAGCCGCCTGCTTGGCGACTCAACTTTCGAGTGGGTGGCCAGAAGGGCAGTCAAAGCTCTCTGGGACCTCAGAAGCAACGAGACAGGCCTGCTAGGCAATGTGATTAACATCCAGACTGGTCAGTGGGTTAGCAAGCAGAGTGGGCTAGGAGCTGGCATGGACTCCTTCTACGAGTATCTGCTCAAGTCTTACATTCTGTTTGGAGACAAAGAAGACTACAAGATGTTTAAAGCTGCTTATGAGAGTATTCAAAACCATCTGAGAAGAGGGCGGGAATCGTGCAATGAAGGAGAGGGGGATCCTCCACTGTATGTCAATGTGAACATGTTTAATGGACAGATAATGAACACCTGGATAGACTCTCTTCAGGCCTTTTTCCCAGGTCTACAGGTGTTAAACGGAGATGTAGAAAATGCAATTTGCCTACATGCCTTTTATTACGCGATATGGAAGCGCTTTGGTGCCCTGCCAGAGAGGTACAACTGGCAGCTGCAGGCACCAGATGTCCTCTTCTATCCACTAAGACCCGAATTGGTGGAGTCAACCTATCTGCTATATCAGGCCACCAAGAATCCTTTTTACCTGCATGTAGGAATGGACATCCTGCAAAGCCTTGAAAAGTATACCAAAGTCAGATGTGGGTATGCCACACTTCATCACGTGGTGGACAAGTCCAAAGAGGATCGGATGGAGAGCTTTTTTCTCAGCGAGACGTGCAAATACTTGTTTCTGTGTGACAGGATTCCAGATGAGCGGCGGTACGCGTTGCCTTTGAAAAGCGTTTACATGAGGCAGATCGATCATATGGTGGGACTGCTCTGAGGACCTCCTCCTCGGGCGCTAGCTTACTGGGATGCTACTGTGGCCAAGGGGTGCTTTGACTCTGCAGGCAGGTCTGGGAGGAGGCCTGTACTAACACTAGTGCTGTGGGGGGAGAGGGGAATGACACCGCACCTCCCTGAAACTGAGGAATGTTTAAGGTATTCAAAAAACGGGTTTCCaatacagtttttcttttcttttttttttttttgagtagtAAAGAGGTGaaggcttttttttaatatcactaTAGTCAAGGTTATTTACAGAACATCACTTTTTGTGgaaaatttaaatttgtaagAATAAGCTTACAATTTATTATtcatcattaattaattattcattatgtCTGTTGTTTCTGTCGAACATAATgaatattctgttttttatttttctagaatTAACCTTACAGTATGCAACCTTTTATTTATGTCCCTTTTCTCTATGAAAGccatatattaaatgtatgttggTAAAGATCATACCTGGTGAGGCATTACCATCCTAGCCTCCAATGGCAAGGTCATTCTTAAGTAAGTTGTCGGGAATGGTTTGCATAGTGCAAAATAGGTTGTCAATCTGATTTTACTGAACAATAGAACTTCACTTCAATATCATGATTTGCAGTCAAAATACTTTGACGCCTTTTTGTTTATGTCATAGTGTTAAAGAAGCAGTTTAAgttactgttttaattgaacatttccacttttattattgtactgGAACAGTAGTCTTAAAGTGCAATGCTTTAAACAACTAAAGAACTACTTTTTCCATTTGTCTTCCATTTTCACCTCAGAAATGTAAAGGTGTTCATGGGCTTCCACTGACCtttcattatttgaattattgctTCCGTTTGATATTTCTCTCAAAGAAGGAAAGATCATGAACGGCATTTTATATGCTAAATCTTTCAGACTGGTGATGTTGACTTAATatgagaataaaatgcattgtattgaatatttaattaattgtattcactTCTCTCTCGGGATTTGCAGCCTACATTTGCACAGATTGCTTGATGACACTGCACATGTATTGGGCAAAAAGTAAGAAACCGACATGGTTGTTCTTTTAGAAAGCTGAGGCTCTTAAGATGAGTGTGACTGTAATGTAGATGATTTATCTGACTTTtttgaaaacacattgttttatatgaGCATCTCAGGAATTACTTGAGAATTATCATTTAGGTTATTAACTTGTGAAATGGTGTCAGTATTTGGTTTTAAATTCCTGAAGTGGTAGGCCTCATATATTAAACTGAACTAGAACATTATTGAAggcaagattattattattttttccaatcttAGTGACATACTAGATACACATAGGTGTTTCATAATACAGAAGTGCAATGTAggttccttaaaaaaaacagtttttaaattagtattaggaataaaatatatattttgtctacTTCTGTTATTTTACAAGTCTGTGTTTCAGTGATATGAAGGCTGATCTGATGACAAAGTTAAGTCAGTGGTGCACAGAAACCTATTTTTTGCACCTTAATCCAGGCAGGTCTAAAGACTAGATTTTTTAATTGAGAGCAGTTTTTATAGTTGCTGCAGGGTAACACAGTTCAGTGCCATAGAAGTTGATCTGCAGATTTgaggctttacattttttttaaatcataattcttatttttttaacttgtttatAATTGAGTATTTGTTCAAGATGGGGGAACAAAATTATGTCTCTAAAGAGTAATTTTTACTTCTAGTGCTTCTATGTAAAATCTTGAATACCAACAAACTGGCCTTAACTTTCTCTGTGCGATCCTTGGGTGTactgtggatatatatatatatataatatatatatatataatgtttgtgtacagtatatgtaagaTCTGGG

Function

symbol description
edem1 Predicted to enable calcium ion binding activity; hydrolase activity, hydrolyzing O-glycosyl compounds; and lytic transglycosylase activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Is expressed in anterior axial hypoblast; hatching gland; liver; pharyngeal arch; and polster. Orthologous to human EDEM1 (ER degradation enhancing alpha-mannosidase like protein 1).

NR:

description
PREDICTED: ER degradation-enhancing alpha-mannosidase-like protein 1 isoform X1

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function

KEGG:

id description
K10084 EDEM1; ER degradation enhancer, mannosidase alpha-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017070 True 3737 mRNA 0.40 11 43843414 43855324

Neighbor

gene id symbol gene type direction distance location
AMCG00017069 arl8ba,arl8b,LOC107095653,LOC103137213,LOC107552649 coding upstream 1824 43825329 ~ 43841590 (+)
AMCG00017068 NA coding upstream 29096 43806964 ~ 43814318 (+)
AMCG00017071 LOC102304252 coding upstream 47844 43781424 ~ 43795570 (+)
AMCG00017072 itpr1,LOC102304252,LOC102779610,LOC102203222 coding upstream 69962 43768858 ~ 43773452 (+)
AMCG00017073 NA coding upstream 111855 43688060 ~ 43731559 (+)
AMCG00017079 NA coding downstream 291388 44146712 ~ 44160471 (+)
AMCG00017080 camkv,LOC106582757 coding downstream 509282 44364606 ~ 44371508 (+)
AMCG00017081 NA coding downstream 517564 44372888 ~ 44385986 (+)
AMCG00017082 NA coding downstream 533588 44388912 ~ 44411339 (+)
AMCG00017083 NA coding downstream 590297 44445621 ~ 44453494 (+)
G17987 LOC107575789 non-coding upstream 342938 43500170 ~ 43500476 (+)
G17988 NA non-coding upstream 372568 43470070 ~ 43470846 (+)
G17969 NA non-coding upstream 448915 43394293 ~ 43394499 (+)
G17909 NA non-coding upstream 607378 43235820 ~ 43236036 (+)
G17882 NA non-coding upstream 730778 43053086 ~ 43112636 (+)
G18077 NA non-coding downstream 246702 44102026 ~ 44103399 (+)
G18084 NA non-coding downstream 261642 44116966 ~ 44201038 (+)
G18125 NA non-coding downstream 521669 44376993 ~ 44377228 (+)
G18127 NA non-coding downstream 532119 44387443 ~ 44387949 (+)
G18186 NA non-coding downstream 768043 44623367 ~ 44714164 (+)
G17697 NA other upstream 1445627 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 4588924 39239073 ~ 39254490 (+)
G17193 NA other upstream 5339782 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 8639182 35158597 ~ 35204232 (+)
G16550 NA other upstream 9742551 34100315 ~ 34100863 (+)
AMCG00017078 LOC106565757 other downstream 270890 44126214 ~ 44137931 (+)
G18192 NA other downstream 799328 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 1093710 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 5516698 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 5547207 49402531 ~ 49403845 (+)

Expression


Co-expression Network