AMCG00017071 (LOC102304252)


Basic Information

Item Value
gene id AMCG00017071
gene name LOC102304252
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43781424 ~ 43795570 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017071
gtttgcaataaaataatcttcCTAATGAGTTTTGTTGGGAATCGTGGTACATTCACACGTGGGTACAAAGCAATGATCCTCGACATGGAGTTCCTTTACCACCTCTTATATCTAATCATCTGTAGCTTGGGAGTGTTTGTCCATGTCTTCTTCTACAGTCTGCTGCTTTTTGATTTGGTGTACAGAGAGGAGACGCTGCTTAATGTCATTAAAAGTGTGACGCGTAATGGGCGGTCTATAATTCTGACTGCTGTGCTGGCTCTCATCCTTGTCTATCTCTTCTCCATCGTCGGGTACATTTTCTTCAAAGATGACTTCATCTTGGAGGTCGACAGGATACCCAACAAAACATTAGAAGATGGTGCCAGCATGGCAGGAGAGTTCCTGTCTTCGGGTGTCTGTAGGCCAGACAGTGGAGAGAACTGTTCAACACAGCCCATCGAGGCTCTCAGCACGGAGTCGGCTGTGTTTGAGGATAAGGAGAGGACCTGTGATTCGTTGCTCATGTGCATCGTCACTGTGCTGAGCCACGGCCTGAGGAGTGGGGGCGGCGTTGGTGATGTTCTCCGAAAGCCTTCCAAGGAGGAACCTCTGTTTGCCGCCCGTGTGATCTATGACCTGCTGTTCTTCTTCATGGTCATCATCATTGTTCTCAACCTGATCTTTGGGGTCATCATTGACACTTTCGCAGACCTGAGGAGTGAGAAACAGAAGAAGGAAGAAGTCCTAAAAACAACTTGTTTCATTTGTGGTCTTGAGCGAGACAAATTTGACAATAAGACTGTGACGTTTGAGGAGCACATTAAAGAGGAGCACAACATGTGGCACTACCTGTTCTTCATTGTGTTGGTGAAAGTGAAGGACTCCACCGAGTACACTGGGCCCGAGAGCTACGTGGCAGAAATGATCAAGGAGCACAACCTGGACTGGTTCCCACGGATGCGTGCCATGTCTCTGGTCAGTAGTGATGCTGAGGGGGAACAGAATGAAATTCGCAATCTGCAGGAGAAGCTGGAGACCACCATGAAGCTAGTGTCCAATCTGTCTGGCCAGTTGACAGAGCTCAAAGAGCAG

Function

NR:

description
PREDICTED: inositol 1,4,5-trisphosphate receptor type 1-like isoform X10

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017071 True 1074 mRNA 0.48 7 43781424 43795570

Neighbor

gene id symbol gene type direction distance location
AMCG00017072 itpr1,LOC102304252,LOC102779610,LOC102203222 coding upstream 7972 43768858 ~ 43773452 (+)
AMCG00017073 NA coding upstream 49865 43688060 ~ 43731559 (+)
AMCG00017076 lrrn1,LOC102780565 coding upstream 234620 43544654 ~ 43546804 (+)
AMCG00017065 NA coding upstream 396575 43371658 ~ 43384849 (+)
AMCG00017066 NA coding upstream 412041 43365827 ~ 43369383 (+)
AMCG00017068 NA coding downstream 11394 43806964 ~ 43814318 (+)
AMCG00017069 arl8ba,arl8b,LOC107095653,LOC103137213,LOC107552649 coding downstream 29759 43825329 ~ 43841590 (+)
AMCG00017070 edem1,LOC102794187 coding downstream 47844 43843414 ~ 43855324 (+)
AMCG00017079 NA coding downstream 351142 44146712 ~ 44160471 (+)
AMCG00017080 camkv,LOC106582757 coding downstream 569036 44364606 ~ 44371508 (+)
G17987 LOC107575789 non-coding upstream 280948 43500170 ~ 43500476 (+)
G17988 NA non-coding upstream 310578 43470070 ~ 43470846 (+)
G17969 NA non-coding upstream 386925 43394293 ~ 43394499 (+)
G17909 NA non-coding upstream 545388 43235820 ~ 43236036 (+)
G17882 NA non-coding upstream 668788 43053086 ~ 43112636 (+)
G18077 NA non-coding downstream 306456 44102026 ~ 44103399 (+)
G18084 NA non-coding downstream 321396 44116966 ~ 44201038 (+)
G18125 NA non-coding downstream 581423 44376993 ~ 44377228 (+)
G18127 NA non-coding downstream 591873 44387443 ~ 44387949 (+)
G18186 NA non-coding downstream 827797 44623367 ~ 44714164 (+)
G17697 NA other upstream 1383637 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 4526934 39239073 ~ 39254490 (+)
G17193 NA other upstream 5277792 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 8577192 35158597 ~ 35204232 (+)
G16550 NA other upstream 9680561 34100315 ~ 34100863 (+)
AMCG00017078 LOC106565757 other downstream 330644 44126214 ~ 44137931 (+)
G18192 NA other downstream 859082 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 1153464 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 5576452 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 5606961 49402531 ~ 49403845 (+)

Expression


Co-expression Network