AMCG00017076 (lrrn1,LOC102780565)


Basic Information

Item Value
gene id AMCG00017076
gene name lrrn1,LOC102780565
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43544654 ~ 43546804 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017076
ATGGCTAGTAGGGTGTTTTCCTCAGTACCCTGTCGGGCATTTATCGGACTGCTGCTAGTCACAGGGGCTGTTTCTTCAGCGCAGAGCAGTGAGTGTCCCCagttgtgcgtgtgtgagatCAGGCCTTGGTTCACTCCTCAGTCCACGTACAGGGAAGCCACAACTGTGGATTGCAATGACCTGCGACTCACCCGTATCCCCAGCAACCTCTCCAGTGACACCCAGGTCCTCCTGCTCCAAAGTAACTACATTGCCAAAACCACAGATGAACTGGAGCAGCTCTTTAACTTGACCGAGCTGGACCTGTCCCAGAATAACTTCAGCAGCATCAAAGACGTTGGCCTGACGAACCTTTCCCAGCTCACTACTCTTCATCTGGAGGAAAACCAAATCACAGAAATGCCTGATTACTGTCTGCAGGACCTAAGCAACTTGCAAGAACTGTATATCAACCACAACCAAATCAACAGCATATCAGCCAATGCCTTCTCTGGACTACGTAACCTGCTGAGGCTTCATCTGAACTCCAACAAGTTAAAGGTTATCGACAGCCGTTGGTTTGAATCTACTCCAAACCTTGAGATACTTATGATAGGGGAAAATCCTGTCATTGGTATTCTGGACTTGAATTTTAAGCCATTGGCTAACCTGCGGAGCCTGGTTCTAGCTGGGATGGACTTGACGGATATTCCTGGAAATGCCCTGGTGGGACTTGACAACCTGGAAAGTCTCTCGTTTTATGATAACAAGCTGGTAAGAGTTCCTCAGCGTGCATTGCAGAAAGTTCCTAACTTGAAATTCCTTGATTTGAATAAAAACCCTGTGCACAAGATTCAAGAAGGAGACTTTAGAAATATGCTGCGCTTGAAAGAGCTTGGGGTGAACAACATGGCCGAGCTGGTTTCCATAGATCGATATGCACTGGATAACCTTCCGGAGCTAACGAAGCTCGAAGCCACAAACAACCCCAAACTATCCTATATCAATCGTTTAGCTTTCCGGGATGTACCATCTCTGGAGAGTCTTATGCTCAACAATAATGCGTTGAATGCTCTGTATCAGAAAACCATGGAGTCCCTTCCTAACCTCCGTGAAATCAGCATTCATAGCAACCCACTAAGGTGTGACTGTGTCATCCAGTGGATGAACTCCAACAAGACCAACATCCGATTCATGGAGCCCCTGTCAATGTTTTGTGCCATGCCGCCTGAGTACCGAGGACAGCATGTGAAAGAAGTCCTGATGCAGGACTCGTCTGAGCAGTGTCTTCCAATGATCTCCCATGACACTTTCCCAAATCACCTGAACTTGGACATCGGGATGACGGTGAACTTGGATTGCCGCGCCATGGCGGAGCCGGAACCCGAAATCTACTGGGTCACCCCActtggaaataaaataacagtagaTACCTTATCTGACAAATACCACCTCAGTAGTGAGGGAACCCTGAAGATCTCCCACATTCAGGTGGAGGACTCTGGCCGATACACTTGTGTCGCACAGAATACCGAAGGCGCAGATACCAGGGTATCTACAATCCGAGTGAATGGCACCCTGCTGGACAGCACCCAGGTCATGAAAATCTACGTCAAACAAACTGAGTCCCACTCCATTTTGGTGTCCTGGAAAGTTAACTCCAATGTTATGACATCCAACCTGAAGTGGTCTTCAGCCACCATGAAGATCGATAACCCACATATAACCTACACGGCCAGAGTACCAGTCGATGTGCACGAATACAACCTGACCCACCTTCAACCCTCCACAGAGTATGAGGTGTGCCTTACTGTGTCCAACATCCATCAGCAGACTCAGAAGTCGTGTGTGAATGTCACCACCAAGAATGCTGCTTTTGCATTAGACATTTCAGATGAAGGAACCAGCACTGCTCTGGCGGCCGTGATGGGAACAATGTTTGCCATCATTAGCTTGGCTTCCATTGCAGTGTACATTGCCAAAAGGCTGAAGCGGAAGAACTACCACCACTCCTTAAAGAAGTACATGCAGAAAACATCTTCAATCCCACTGAATGAGCTCTACCCCCCTCTCATCAATCTCTGGGAGGGCGACAGCGAAAAGGACAAAGAGGGATCTTCAGAAACAAAGCCCACCCAAGTTGACACAACAAGAAGCTACTACATGTGGTAA

Function

symbol description
lrrn1 Acts upstream of or within olfactory nerve formation and olfactory placode morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in basal plate midbrain region; hindbrain neural keel; nervous system; neural plate; and somite. Orthologous to human LRRN1 (leucine rich repeat neuronal 1).

NR:

description
PREDICTED: leucine-rich repeat neuronal protein 1

GO: NA

KEGG:

id description
K24492 LRRN1_2_3; leucine-rich repeat neuronal protein 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017076 True 2151 mRNA 0.48 1 43544654 43546804

Neighbor

gene id symbol gene type direction distance location
AMCG00017065 NA coding upstream 159805 43371658 ~ 43384849 (+)
AMCG00017066 NA coding upstream 175271 43365827 ~ 43369383 (+)
AMCG00017055 NA coding upstream 225341 43317690 ~ 43319313 (+)
AMCG00017056 NA coding upstream 229703 43308695 ~ 43314951 (+)
AMCG00017054 NA coding upstream 420251 43118218 ~ 43124403 (+)
AMCG00017073 NA coding downstream 141256 43688060 ~ 43731559 (+)
AMCG00017072 itpr1,LOC102304252,LOC102779610,LOC102203222 coding downstream 222054 43768858 ~ 43773452 (+)
AMCG00017071 LOC102304252 coding downstream 234620 43781424 ~ 43795570 (+)
AMCG00017068 NA coding downstream 260160 43806964 ~ 43814318 (+)
AMCG00017069 arl8ba,arl8b,LOC107095653,LOC103137213,LOC107552649 coding downstream 278525 43825329 ~ 43841590 (+)
G17987 LOC107575789 non-coding upstream 44178 43500170 ~ 43500476 (+)
G17988 NA non-coding upstream 73808 43470070 ~ 43470846 (+)
G17969 NA non-coding upstream 150155 43394293 ~ 43394499 (+)
G17909 NA non-coding upstream 308618 43235820 ~ 43236036 (+)
G17882 NA non-coding upstream 432018 43053086 ~ 43112636 (+)
G18077 NA non-coding downstream 555222 44102026 ~ 44103399 (+)
G18084 NA non-coding downstream 570162 44116966 ~ 44201038 (+)
G18125 NA non-coding downstream 830189 44376993 ~ 44377228 (+)
G18127 NA non-coding downstream 840639 44387443 ~ 44387949 (+)
G18186 NA non-coding downstream 1076563 44623367 ~ 44714164 (+)
G17697 NA other upstream 1146867 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 4290164 39239073 ~ 39254490 (+)
G17193 NA other upstream 5041022 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 8340422 35158597 ~ 35204232 (+)
G16550 NA other upstream 9443791 34100315 ~ 34100863 (+)
AMCG00017078 LOC106565757 other downstream 579410 44126214 ~ 44137931 (+)
G18192 NA other downstream 1107848 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 1402230 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 5825218 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 5855727 49402531 ~ 49403845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_11005204_11007357 LRRN1 coding CI01000340 null 11004438 ~ 11007434 (-)