AMCG00017078 (LOC106565757)


Basic Information

Item Value
gene id AMCG00017078
gene name LOC106565757
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44126214 ~ 44137931 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017078
GGCAGTGACCCTTGTGACAGATCCACTGTTTTTACAGCTAGGAGAAAATAATCAGAAGATGTACTTTCGTTTGGATCAATGCAAGgACCTTTTCTGTGGAGACTAACTGAATGTAGCTGATTGCCAGCATGGCAGCGGATGTCCACAATAAGAAGGTGGTGTGGGAGATACAGAATGGCAGCCTGGCTCCAGTGGACAAACTCCGCAACGAGAGATCAGATAGCCCCACTCCAGGACTGGTGGAGGGAACAGAACCAGGGGCTGGGCAAGACAATGCCATGTTTGTCCACACACGCTCTTTTGAAGACCTCACAGCCGATAATGAGGAAGCAGGGGGTGTGGAGACAGCCTCTGAGCTGAGTGCACAATTGGAGGAGAAAGAAGAGCGGGGGGATGAAAGAAGGGGGCTGGAAGGGGAGCAAGAAGATGAGGGGGAGGAGGCCAAGCTCAGTCGGAGGGTGGAGGAGGATGACGACATGACCAGCGAGGTGTGGAGGAGGCGGCGGAAGCATGTGTTCGTGCTGAGTGAGGCAGGGAAGCCTATATATTCTCGCTATGGCACCGAGGAGGCCCTGTCCAGCACTATGGGAGTGATGATGGCACTGGTGTCCTTCGTGGAAGCTGAGAAGAATGTCATCCGATCTATCCACGCAGATGGCTACAAAGTGGTCTTCCTGCGCAAGAGCCCCCTGGTGCTGGTGGGAGTGGCCCGGACGCAGCAGTCCGAGCGAGAGTTGACCCGCGAGCTTCTCTACATTTACTTCCAGATCCTCAGCCTGCTCACTCTGACACAGCTCACCCACATCTTCCAGCACAAGCAGAACTATGACCTGCGGCGGCTGCTGGCTGGATCGGAGCACCTCACTGACAACCTCCTCAGGCTCCTGGACCGGGACCCGGGGTTCCTGCTGTGCGCCGTCAcctgcctccccctccccagTTCCACCCGCGATGTCATCTCCTCCAGCCTGCAGGCTGCAAAGGCCAAAAGCCTGGTCTTCTCCATTCTGCTAGCAGGGAACCAGTTAGTGACTCTGGTGCGGAAGAAAGACCAGTACCTCCATCACATGGACCTGCACCTGCTTTTCAATCTGGTGGGTTCCTCCAGTTCTTTCCGTGAGGGGGAGGGCTGGACTCCTATCTGCTTGCCCAAATTCAACACAGCTGGCTTCTTTCATGCCCACATCTCCTACCTGGAGCAGGCGTCTGACCTCTGCCTCATCCTGGTCTCCACTGACCGTGAGGACTTCTTCAACTTGTCCGACTGCAAGCGGAGATTTTTGGAACGACTCCGTCGGCGCAGTGCCTACCAGGCCCTGCAGGAGGCACTGCGGGCCCCCAGCTACCCTGTCTCCCAGGTGGGCATTCCAGAACTCAGGCACTTTGTCTACAAGTCCAAAAGCTCCGGGCTCTACACCAGCCCTCAGCTCCCCACACCTTACCTATctgaggaggagcaggagaggcTGATGGGACTGTACCAGTATCTGCACAGTCGCATCCATCATCCCACACGACCCCTGCGCTCTGTCTATCActgtggggagagggagaacCTGCTGGCATTGGTGACCAGTGGCTTCGAGCTCTACCTATGCTTCAGTCCTTTGGGGACCAAAGCCCTGGCTGTGGCAACCATTAACAAGCTGCTGAAGTGGATTCGGAAGGAGGAGGACCGTCTCTTTATTCTCAGTCCACAGACATACTGACCCTGTAACAAACTCTCTGGTTTCATAGAAGCTAACCATCAAGCTGAGAAAACCAGAGACAGATGTTATTTGTTATTCTAACCAATTAATGAATATGCAATACTAAAAGGAAGTAgtttaactttaaatgtttcCACCTCTGTTCTTCAGTGCTTAGCTTTATAAATTCTGCTTTACTGGAAaagattttaattgaattaaaaataatttatgttttttaaatgacctgCGATCTACTGGCCTAATGTACTTCCAGTTGTTAATAAATCAATTGGCCTCTTACCCCCTGGTATAACAAGCACAAGAGGATCATGATTTTGATTATCCTGTCGTGATCTGTGGCTTAGGAAAATTGTCTGCTCTAATATTAATGATTATAGCTCAGCTATAAATATTCAGCTTCAACTCAAGTTTGCAGCACAGTTCAGTATCTAGATATACACGTCATCACTGTTCCTTTTGTCCACATGCCATGATCTATGGTGGGGGACCTCATGTAACATTGCTAATTGAAACCAGACTTCAAGGATCATGTTTATTTGCACCTGTATGTAACCAATGATACAATTTGTATgtttaaccaattaaaattgcaAACTTTGCCACACTTAAAAATATTGTACTTGCATGTGACATCAGGGTGGCAAACATGAGATGAATTGAAGCTCTTGTTGCTGTACAAGTAACTGAAATAACATGTGTTCACTCAGAAGATAACGTATAAGCCCACAgttcttttagttttgttaaatgTGTACTGTACTCTAATAGCTTGTGTACTTTTCTTTTTGGCGtgggtgatttttgttttttttaacttggttCTAATATATAGTGGGATGTAATGGGAATGCAAAtgcattgtctttattttttttaatgcattccaATGAATGTAGCTATTTAGTGGTGAGTATTGGAGAAGTACACAAATGGGCTGCTGATTCCTAGAGAAATTCACAGAGGCCATCTATTCCAGTGACCTTCTGACTGTGATTAAAGgattacttttattaaaactgtaaatgtatttgacaCTTCATTCTGTCTTTATTGTAACGGTTTGTCATCTTTGATGTAGGTTAGGAGATCtgcttgacattttaaaaatatattgaacagcttattatttttaaaaacaattgtgatTAAATCCTCTCAAggaagatgttttatttattttttaatcatgaagaacaaaaacagtatCTGTACCATTTTCAGTCCTTTTCTCGTTATCTATATAGCAAACAAgtgtttactgtttattttaacactaaGGAAATTTGCTACAGTTTTAATTGCATCAAATAAACCTTTGTAGAAAAATGTGGATTCTGTTGAGCAAACATTCCACCTTAATTTCCCCAGCTTTTTCACTATGACATTAATTGTGCTAATGACATCATTTACTACTGTAGCACCAAAAGTAGAAgctgtaacaataataataaaagcaaaagctaATAATGATTGCCTTGGTTTCAAAGTTGTCTGTCTTCTGAATTGAtgcttaaacattttttttatagagaCTACATggtgagattaaaaaaaaaaaaagttttgcatgGATATAAAAATACCTATTTTCATacttaaaaa
>TU22431
GGCAGTGACCCTTGTGACAGATCCACTGTTTTTACAGCTAGGAGAAAATAATCAGAAGATGTACTTTCGTTTGGATCAATGCAAGgACCTTTTCTGTGGAGACTAACTGAATGTAGCTGATTGCCAGCATGGCAGCGGATGTCCACAATAAGAAGGTGGTGTGGGAGATACAGAATGGCAGCCTGGCTCCAGTGGACAAACTCCGCAACGAGAGATCAGATAGCCCCACTCCAGGACTGGTGGAGGGAACAGAACCAGGGGCTGGGCAAGACAATGCCATGTTTGTCCACACACGCTCTTTTGAAGACCTCACAGCCGATAATGAGGAAGCAGGGGGTGTGGAGACAGCCTCTGAGCTGAGTGCACAATTGGAGGA

Function

NR:

description
PREDICTED: protein SAND-like

GO: NA

KEGG:

id description
K20195 MON1; vacuolar fusion protein MON1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017078 True 3314 mRNA 0.45 6 44126214 44137931
TU22431 False 376 TUCP 0.51 3 44126214 44131602

Neighbor

gene id symbol gene type direction distance location
AMCG00017070 edem1,LOC102794187 coding upstream 270890 43843414 ~ 43855324 (+)
AMCG00017069 arl8ba,arl8b,LOC107095653,LOC103137213,LOC107552649 coding upstream 284624 43825329 ~ 43841590 (+)
AMCG00017068 NA coding upstream 311896 43806964 ~ 43814318 (+)
AMCG00017071 LOC102304252 coding upstream 330644 43781424 ~ 43795570 (+)
AMCG00017072 itpr1,LOC102304252,LOC102779610,LOC102203222 coding upstream 352762 43768858 ~ 43773452 (+)
AMCG00017079 NA coding downstream 8781 44146712 ~ 44160471 (+)
AMCG00017080 camkv,LOC106582757 coding downstream 226675 44364606 ~ 44371508 (+)
AMCG00017081 NA coding downstream 234957 44372888 ~ 44385986 (+)
AMCG00017082 NA coding downstream 250981 44388912 ~ 44411339 (+)
AMCG00017083 NA coding downstream 307690 44445621 ~ 44453494 (+)
G18077 NA non-coding upstream 22815 44102026 ~ 44103399 (+)
G17987 LOC107575789 non-coding upstream 625738 43500170 ~ 43500476 (+)
G17988 NA non-coding upstream 655368 43470070 ~ 43470846 (+)
G17969 NA non-coding upstream 731715 43394293 ~ 43394499 (+)
G17909 NA non-coding upstream 890178 43235820 ~ 43236036 (+)
G18125 NA non-coding downstream 239062 44376993 ~ 44377228 (+)
G18127 NA non-coding downstream 249512 44387443 ~ 44387949 (+)
G18186 NA non-coding downstream 485436 44623367 ~ 44714164 (+)
G18196 usp4 non-coding downstream 531492 44669423 ~ 44670878 (+)
G18197 NA non-coding downstream 533361 44671292 ~ 44671870 (+)
G17697 NA other upstream 1728427 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 4871724 39239073 ~ 39254490 (+)
G17193 NA other upstream 5622582 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 8921982 35158597 ~ 35204232 (+)
G16550 NA other upstream 10025351 34100315 ~ 34100863 (+)
G18192 NA other downstream 516721 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 811103 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 5234091 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 5264600 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 5575536 49713467 ~ 49727567 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110527117 LOC106565757 coding NC_048571.1 CM023225.2 47289490 ~ 47294719 (-)