AMCG00017079


Basic Information

Item Value
gene id AMCG00017079
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44146712 ~ 44160471 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017079
ATGGTCCAGGGGGCCATACTTTTTGTGACTTGTATCTGGCTGCTGAGTCTGACAGCCTTCGCCCAGGATTGCATGTCAGTCCCTTCACAAAATATAGATTTCTCAGTGCCCTACACTTTTCCTTACTACCAGACTCTGAGTCCTGTACAAAACATAGTGACTAACACAACATTGGCAAGCGGTACAATATATGTGGCTTCACGGAATATTATTGAATCTGTAAATAGCAGTTTTGGTAAATTATGGGAATTACAGACTGGTCCAGTGGGTAGCCCTAAATGCCAGATCTGCAGCTTGTGTGACATTGATGGAGACTCCAAAATCGCAGAGGACACGGATAACCAGGTCCTGTTGGTGGATCCATATCTTCCATACCTATACTCTTGTGGCAGTTCTCAGTATGGTGTCTGTTACTTCCATAACATTTTAGATGATGGATCACTCCTTGATTCTACTTGCCTTTATAAAAAAGAGTCAAATACACCTTCAGAATGCCCAGACTGTGTTGCTAGCCCTCTGGGTACAAAAGCCACTATTGTGGAAGAAGGCCAGACTGTGTACTTCTTTGTGGCGGCCACTGTTGACCAGAAAGtgacacaaacatacagcagGAAGTCCATATCGGTGCGGCGGCCAGTGTCAACAGAGGACGGATTTTACACAGATGTGCAGGGGCTGACTGTTCTTCCGGAGTTCCTATCATCTTACCCcatcaattacatttacagctttTACACTCAGGATTATGTCTACTTCTTGTCggtgcagagagagagtgtggacGTGCCTTTGTCACCCTTTCAAACACGCCTAGGACGGCTCCCTCGCTCAGAGTGGGAGATGCGCCATTATCGCGAGGTGGTTCTAGAGTGCCGCTTCGAGCCAAAACGACGGAGGAGGGAAGTTTATAGAGATGTGGTCTACAACGCACTGCAGGCAGCCCACTTCGGGAGGGCTGGCAAAGAGCTGGCTGAGGAGCTGGGGGTGGATGACAAATCTGAAATCCTGTACGGGGTGTTCGCTGTGTCTGAGCCAGAGAAGGGGCTTCCCTCTCCGGACTCGGCTCTGTGCGCCTTCCCTATGGATAGAGTCAACAAAGCCATAGAGAATGGAGTAGATGCATGCTGCTCCTCGGGGACAGAACGCCTCTCCCGTGGACTCTGCTTTTTCATGCCTTGTGAGAACTGCCCCCATGAGATGGATAACGAAATGAGCTGCATGGACCAGCCCACTATGGTGTCCCAGCCCTACTACAGAGTGGACCTCTTCAACGGGAACATGAAGAATGTGCTGCTGACATCTGTCTTGGTCACCCCCATTGACAACAAAACTGTTGCCCACATAGGGACCTCAGATGGAAGACTTCTTCAGtttgtctTAAGAAGATCAAGTCCAATTATCTTTGCAAATTATTCCCTGGCAGAAAACCAACAAGTGTCTTCAATAGCCTCTGAGTATTTAGCAGATTccttgctttttgttgttggaaACAAGGTAATCAAGGTGCCCAAGAAAGGACCGGGCTGCCGCCACTTTCTGAATTGCAACACGTGCCTCACGGCCCCAGAGTTCATGAGCTGTGGTTGGTGTGATGGGGTCTGCACCTGGAAGCATGAGTGCTCCACCATGTGGAGGGATGAATCCTGTCCACCTGTCATCACTCAGTTCTTCCCAAAGATGGCTCCCCCTGATGGCAAGACTGAGCTGAGACTGTGCGGCTGGGATTTCCAGTCCCCTCAGCGTCGTGCTATAAAGCCAGAAACTCACCTGGTGCGAGTGGGAGAGACGGTCTGCGAAGTGGTGCCGGCCAAGAGCAACAGCTCACAGCTGATCTGCAGGCTTCAAACTGGAGCCACTGAGCTCTTTCAGCCTCTCCAGATCACTGTGGAGGTACACGAAGGGAAAGTTGAAGGTCCATATTCTATTGAGGGGAAGGCCCAAATCGATGGATTCACATTTGTGGTACCCAATATCACTGAGATCCTGCCAGACTTTGGACCCATAGTAGGCGGAACCAAGATCACTGTTACTGGGCCTTACCTGAACACAGGAAATCAGAGAAATGTCACCCTGGATGGGatcaaatgtaaaatcataAGtgttttaccTACAGAAGTGAACAGCTCTGCAATTGTCTGCGTGTCACCCCCTGTTTCCAATGTGAAAAGTGCTAATCTGGAGGTGAGGATCGATGAATCTCAGGTGCCTACCATCAAGGACTTCCACTATAAAAAAACTCCGACCATAACTGAAGTGCTTCCAGACTGCAGCTTTGACAAAGGGTCAAACATAATTATCAAAGGCACTGATCTGGATTCCGTCTACAAGACTGTCATAATCTTTGAGCCCAGTGACAAGACTGACAACAGCCTAAAGACTACG

Function

GO: NA

KEGG:

id description
K05100 MST1R, RON, CD136; macrophage-stimulating 1 receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017079 True 2382 mRNA 0.49 9 44146712 44160471

Neighbor

gene id symbol gene type direction distance location
AMCG00017070 edem1,LOC102794187 coding upstream 291388 43843414 ~ 43855324 (+)
AMCG00017069 arl8ba,arl8b,LOC107095653,LOC103137213,LOC107552649 coding upstream 305122 43825329 ~ 43841590 (+)
AMCG00017068 NA coding upstream 332394 43806964 ~ 43814318 (+)
AMCG00017071 LOC102304252 coding upstream 351142 43781424 ~ 43795570 (+)
AMCG00017072 itpr1,LOC102304252,LOC102779610,LOC102203222 coding upstream 373260 43768858 ~ 43773452 (+)
AMCG00017080 camkv,LOC106582757 coding downstream 204135 44364606 ~ 44371508 (+)
AMCG00017081 NA coding downstream 212417 44372888 ~ 44385986 (+)
AMCG00017082 NA coding downstream 228441 44388912 ~ 44411339 (+)
AMCG00017083 NA coding downstream 285150 44445621 ~ 44453494 (+)
AMCG00017084 NA coding downstream 307648 44468119 ~ 44477790 (+)
G18077 NA non-coding upstream 43313 44102026 ~ 44103399 (+)
G17987 LOC107575789 non-coding upstream 646236 43500170 ~ 43500476 (+)
G17988 NA non-coding upstream 675866 43470070 ~ 43470846 (+)
G17969 NA non-coding upstream 752213 43394293 ~ 43394499 (+)
G17909 NA non-coding upstream 910676 43235820 ~ 43236036 (+)
G18125 NA non-coding downstream 216522 44376993 ~ 44377228 (+)
G18127 NA non-coding downstream 226972 44387443 ~ 44387949 (+)
G18186 NA non-coding downstream 462896 44623367 ~ 44714164 (+)
G18196 usp4 non-coding downstream 508952 44669423 ~ 44670878 (+)
G18197 NA non-coding downstream 510821 44671292 ~ 44671870 (+)
AMCG00017078 LOC106565757 other upstream 8781 44126214 ~ 44137931 (+)
G17697 NA other upstream 1748925 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 4892222 39239073 ~ 39254490 (+)
G17193 NA other upstream 5643080 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 8942480 35158597 ~ 35204232 (+)
G18192 NA other downstream 494181 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 788563 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 5211551 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 5242060 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 5552996 49713467 ~ 49727567 (+)

Expression


Co-expression Network