AMCG00017081


Basic Information

Item Value
gene id AMCG00017081
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44372888 ~ 44385986 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017081
atggtgaaAATGCCGATCCGGGCGTACTGTACCATCTGCTCCGACTTCTTTGATCACTCTAAAGATGTGGCAGCAATCCACTGCGGACACACCTTCCACTACGAATGTCTTCTTCAGTGGTTCCAGTCCGCTCCATCGAAGACCTGTCCTCAGTGCAGAAAACAGGTCAGTACCAGACACATCATCAACAAGCTGTTTTTCGATGTGGGAGGTGAGGAGGAGGGAGCCCGGATGGACCCTGAGAGCTTACAGaatgaaCTGGACAAAATGAGATCTATACTAACCTCCAAAGagaaGGAAAAGAAGGAGTGTCAGAAGATGGTCGAGGCCCTGCGGGAGACGGTGGACAGGCAGGTCATTGCTCTGGAGGGGGTGAAGAAGGAGCTCGGAGAGAAGAACATGCTGTGCTCCGCACTCAAGAAACAGATGAAGTACCTAGAGAGCCAgcaagacagtgtccagtcagccAAAGAGGAGGTGCGCCGCCTAAGGACCAAGATGAAGACCTATGAGAGTATGGACCTTCTCCTTCAGGGCCAGCGGGAAGAGGTCGAGGCTATGGTCAAGGACATGGGGGTGAGCCATGTGGCAGTCGAGCAACTGTCCATCTACTGCATCTCCCTCAAGAAAGAATATGAAAACCTTAAAGCAAGCCACAGGACCTCTAATGACATCTGTGAGAAACTCAAGAGAGAGGTTTTTGCATCCAACAACAAGTTACAGAAAGCTACCCTGGAGGTTAGCCGCACGAGAGAGGAATTGAGCGCAGCCCAGGAGGATCTGAAGAACTCTGACAAACAAATCAATAGTCTGAAGAAAAAGGTAGAGTTCCTGCAGAAGACACTGAGCACTCCATCGCGCACCAATGACGCCATCAGCCGCATTGTCTTTGAAAGCCCTGCCCCCTTGGAGATAAAGCAGCCTTTTCTGCACGAGCCAGCAGACAGTCAGGACATTGACCTTAACTTGACCTTTGACGTCGCAACCCCTGAGCATCAAGACAAAAAGACTGTCCCTGTTCCCTCCAAGAAAATGCGTATGGATCCTGACCAAGACCGCTTTCCAGCCCTCAGTCTGCCTGACCGATGTATCTCTCTCTGGTATCAGAAACCCCGAGTCCAGCCCGAAGAGGAGTTTTCCTTGGCCCCCTTGCTCCGTAACTCTCTGCTCTTCAGGAAAAAGACCTTTGGAAGCATGTTGGACCCCCAGACTACCAAAGTGGGCGCTgtcaGAACTGGCTTTGATGGACTGGGAGGAAGAACCAAATTCATTCAGCCTTCACCCCTATCGGAAATCCGTCCACTTGTGATGAAGGCAAAGCGGAAAAAGGTCACCAGGCCAGTCTGTAGCAAGATTTCCACCAATATGATGAAACTGGACAGCTTTCTGGAGTGA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11985 TRAIP, TRIP; TRAF-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017081 True 1395 mRNA 0.51 15 44372888 44385986

Neighbor

gene id symbol gene type direction distance location
AMCG00017080 camkv,LOC106582757 coding upstream 1380 44364606 ~ 44371508 (+)
AMCG00017079 NA coding upstream 212417 44146712 ~ 44160471 (+)
AMCG00017070 edem1,LOC102794187 coding upstream 517564 43843414 ~ 43855324 (+)
AMCG00017069 arl8ba,arl8b,LOC107095653,LOC103137213,LOC107552649 coding upstream 531298 43825329 ~ 43841590 (+)
AMCG00017068 NA coding upstream 558570 43806964 ~ 43814318 (+)
AMCG00017082 NA coding downstream 2926 44388912 ~ 44411339 (+)
AMCG00017083 NA coding downstream 59635 44445621 ~ 44453494 (+)
AMCG00017084 NA coding downstream 82133 44468119 ~ 44477790 (+)
AMCG00017088 LOC100694221,LOC104965620,LOC102796420,LOC101486183,LOC103385919 coding downstream 270801 44656787 ~ 44658914 (+)
AMCG00017090 LOC103399082 coding downstream 306997 44692983 ~ 44714100 (+)
G18084 NA non-coding upstream 171850 44116966 ~ 44201038 (+)
G18077 NA non-coding upstream 269489 44102026 ~ 44103399 (+)
G17987 LOC107575789 non-coding upstream 872412 43500170 ~ 43500476 (+)
G17988 NA non-coding upstream 902042 43470070 ~ 43470846 (+)
G17969 NA non-coding upstream 978389 43394293 ~ 43394499 (+)
G18127 NA non-coding downstream 1457 44387443 ~ 44387949 (+)
G18186 NA non-coding downstream 237381 44623367 ~ 44714164 (+)
G18196 usp4 non-coding downstream 283437 44669423 ~ 44670878 (+)
G18197 NA non-coding downstream 285306 44671292 ~ 44671870 (+)
G18255 NA non-coding downstream 599810 44985796 ~ 44986081 (+)
AMCG00017078 LOC106565757 other upstream 234957 44126214 ~ 44137931 (+)
G17697 NA other upstream 1975101 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 5118398 39239073 ~ 39254490 (+)
G17193 NA other upstream 5869256 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 9168656 35158597 ~ 35204232 (+)
G18192 NA other downstream 268666 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 563048 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 4986036 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 5016545 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 5327481 49713467 ~ 49727567 (+)

Expression


Co-expression Network