AMCG00017082


Basic Information

Item Value
gene id AMCG00017082
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44388912 ~ 44411339 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017082
CTCAAAGTCAGTGCATTTCCCAGGAGTTCAGTTCATCCAGACGTGCCATATAGGTTCATTATACAAACTTTAAATCATTTCGTACTTTCAGAAATGGCAGAAAACACGGACATCGACGAAAGTCTGTATTCTCGACAGCTGTATGTGCTGGGGCATGAGGCAATGCTCCGCATGAAGAAGACTAATGTCCTGATCTCAGGAATGAGGGGTCTGGGAGTGGAAATCGCCAAGAATGTAATCCTAGCCGGAGTCAACCAAGTCACCATCCAGGATGAGGGGCTGGCAGGATGGGCAGACCTGTCCTCTCAGTTCTACTTGGAGCAGGGTGATGTGGGTCAGAACCGGGCCGAGTGCTCCCTCAACAAGCTGTCTGAGCTCAATAATTATGTTACGGTCTGCTCACACACTGGGCCTCTCACTCAGGACCTGCTGGCCCAAAACCAGGTTGTGGTGCTCACCAATTCATCTTTGGAAGAGCAGCTTCGCATTGGGAGTTTCTGTCACTCAAACGGCATTAAATTCATTGTAGCTGATACTAAAGGCCTGTGTGGGCAGCTGTTCTGTGACTTTGGGGAGCAGTTTGAGGTGATTGATACAAATGGAGAGCTGCCTGTTTCGGCAATGATTTTGCACATCTCCCAGgGCAATCCTGGGATAGTTACTTGCATGGATGAGCATAACCACAGGTTCCAAGATGGAGATTTGGTGACCTTCTCAGAGGTCTGTGGAATGACGGAGCTCAATGGTTGTGAGCCCATGCAGGTCAAAATGCTTGGTCCGTACACATTCAGCATCTGTGACACCTCTGGCTTTTCCTCGTACGAGAGAGGTGGTGTTGTTACGGAGGTTAAGAAGTCAAAGACGGTCACTTTTAAACCCCTCAAGGAGGCTCTTGTTCACCCAGATATTGTGCAGAGTGATTATGGGAAGTGCGAGCGCCACAGGACATTGCACATCGCGTTCCAGGCTCTTCATCAGCTGCTCAAGGAAACGGGCCACCTGCCGACACCCCGAGCACAGGCTGGTGCAGAATTATTGCTTGCCATAGCTAAGGAACTGAATAAGGACTCCCACCCTGACACGCATGTGGAGAGGTTAGACGAGAGCATCGTGTGCAAACTGGCGCTGACGGCAGGAGGAGACCTCAGTCCCGTCAATGCCTTTATCGGGGGGCTGGCAGCACAGGAGGTCATGAAGGCCTGCACTGGCAAGTTCTCCCCTCTGGTTCAATGGCTGTATTTCGATGCTCTGGAGTGCTTAcccgaggaggatgaggagcaACTTCTGACTGAGGACACCTGTGCGCCCAGACACTGTCGCTATGATGGTCAGATTGCTGTGTTTGGGACCGCTTTCCAGGAGAAGCTGGCCAAACAGAAGTACTTATTGGTAGGAGCTGGTGCCATTGGTTGCGAGCTGTTGAAAAACTTTGCCCTGATAGGTCTGGCATCGGGAGAGGGTGGGCACATCACTGTGACTGACATGGATTCAATTGAGAGGTCCAATCTGAATCGACAGTTCCTGTTCAGGCCCCAAGACATTGGTAAATCGAAATCGGAGACGGCCGCCCAGGTGATAAAGAGAATGAACCCTGCTCTCCGCATCACAGCTCAGCAGAACAGAGTGGGCCCTGACAGCGAGCAGGTTTATGGCCATGATTTTTTCTCCCAACTCGATGGGGTGGCTGCTGCTTTGGACAACATTGAAGCCAGAGTGTACGTTGATGGACGGTGTGTGCAGCACCAGAAGCCCCTGCTGGAGAGTGGGACTCTTGGTGCCAAAGGACACACCCAGGTCATCGTGCCCTTTTTGACGGAGCCATATGGAACCGCCAAGACTGGGCCAGAGAACGCCATCCCCCTGTGCACCCTGAAGAACTTCCCTCACCGCATCGAACACACCCTTCAGTGGGCCAGAGATGAGTTTGAAGGGCTTTTCAAAATCCCGGCTGTAAATGTCAACCAGTACCTGAATGACTCTGACTTTGTGCAGCACACCCTGAGGTTGGACGAGGCACAGTCTCTGGAGATTCTGAAAGGGGTGTACAGCCACCTGGGGGAGCAGCGGCCACAGAACTGGGATGACTGTGTGAACTGGGCCCGCCAACGATGGGAGAAGCTCTACAGGAATGATATCCGCCAGCTACTACACTGCTTTCCCCCAGAAGAGAAAACAAGCTCTGGCCTGCCATTCTGGTCAGGGCCTAAGAGATGTCCCCATTCCTTGAGCTTCGACCCAAACAATACCACCCATATGgactatattgtagctgcttcCAACCTGTATGCCCAGATTTATGGCATTGGCGGCACCAGAGATCGCAGCGCCATTCTAAACACACTCCAGGGTGTTATTGTTCCAGACTTTTCTCCCAAATCCAATGTGAAAATCCATGTGACTGACCAAGAGATGGAAGAGGAGAAGTCGGCAGTGGACAAGAACAAACTGGAAGAGTTGAGCAAGAATCTGGCATCTCCACAGAGTTTCAACATCTCCAAGATGCACCCAGTAGAGTTTGAAAAGGATGATGACACCAATTTCCATATGGATTTCATTGTTGCTGCTTCGAACCTGAGAGCTGAGAACTACGATATCCCCCCAGCTGATCGCCACAAGAGTAAACAGATTGCTGGAAGTATCATCCCTGCCATTGCTACGACAACAGCTGCTGTGGTGGGTCTGATGTGCCTGGAGCTGTACAAGATCGTCCAAGGTCACAAGCAGATCAGATCCTACCGGAATGGCTATGTGAACCTGGCTCTGCCATTATGTACCATGATGCTGCCTCTTGGACCAAAAGTGTTCAAAGTGAGTAACTGCTGGTTGAAGTGCTACTTTCCGAAGTCAGGAAAAGGTTATTTCTCCATTTCGAATTGA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017082 True 2877 mRNA 0.51 21 44388912 44411339

Neighbor

gene id symbol gene type direction distance location
AMCG00017081 NA coding upstream 2926 44372888 ~ 44385986 (+)
AMCG00017080 camkv,LOC106582757 coding upstream 17404 44364606 ~ 44371508 (+)
AMCG00017079 NA coding upstream 228441 44146712 ~ 44160471 (+)
AMCG00017070 edem1,LOC102794187 coding upstream 533588 43843414 ~ 43855324 (+)
AMCG00017069 arl8ba,arl8b,LOC107095653,LOC103137213,LOC107552649 coding upstream 547322 43825329 ~ 43841590 (+)
AMCG00017083 NA coding downstream 34282 44445621 ~ 44453494 (+)
AMCG00017084 NA coding downstream 56780 44468119 ~ 44477790 (+)
AMCG00017088 LOC100694221,LOC104965620,LOC102796420,LOC101486183,LOC103385919 coding downstream 245448 44656787 ~ 44658914 (+)
AMCG00017090 LOC103399082 coding downstream 281644 44692983 ~ 44714100 (+)
AMCG00017096 NA coding downstream 304052 44715391 ~ 44739801 (+)
G18127 NA non-coding upstream 963 44387443 ~ 44387949 (+)
G18125 NA non-coding upstream 11684 44376993 ~ 44377228 (+)
G18084 NA non-coding upstream 187874 44116966 ~ 44201038 (+)
G18077 NA non-coding upstream 285513 44102026 ~ 44103399 (+)
G17987 LOC107575789 non-coding upstream 888436 43500170 ~ 43500476 (+)
G18186 NA non-coding downstream 212028 44623367 ~ 44714164 (+)
G18196 usp4 non-coding downstream 258084 44669423 ~ 44670878 (+)
G18197 NA non-coding downstream 259953 44671292 ~ 44671870 (+)
G18255 NA non-coding downstream 574457 44985796 ~ 44986081 (+)
G18302 NA non-coding downstream 832145 45243484 ~ 45243983 (+)
AMCG00017078 LOC106565757 other upstream 250981 44126214 ~ 44137931 (+)
G17697 NA other upstream 1991125 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 5134422 39239073 ~ 39254490 (+)
G17193 NA other upstream 5885280 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 9184680 35158597 ~ 35204232 (+)
G18192 NA other downstream 243313 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 537695 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 4960683 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 4991192 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 5302128 49713467 ~ 49727567 (+)

Expression


Co-expression Network