AMCG00017084


Basic Information

Item Value
gene id AMCG00017084
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44468119 ~ 44477790 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017084
ATGCAGATCAAGTCAGTGATACCCAGCAATGTGTTTGAGGAGCCCATAGTCAGCAAGACTAAGCATCCTGATATATTCAGTGTTGAGaTAAGACTCAATGCTTCACTGGACTTTGAGAGTGTGCACATCTACACCATATTCCTCAGACTGGTCACTGCCAATTCCACTGTGGAAGAGAACTTCAATGTGTTTGTGATAGATGTCAATGAACCACCAACATGTTTCTTCCAGTTTCCAGGTGCTGAGGTCCAGGTCCCAGAAAGCTTGTCTGTTCCAGCCCAGATTTACCAAGTTTTGGCCTCAGACCCTGATCAAAATGACACGCTCAGTGATTTTATTATCTATGTGACCGTCACTGACCAGGGAGGGGAATCCTGCAGCGGCACACTAAGTTTAAAGGTCCTGAAAGTCTTCATCCACCCTCTCACATTTATAAATCCTTCCCAGAATGTCACCATCTATGAGAACAGTGGGGAAAATGACTACGTGGCAACTGTCACTGGCAATGGCTCCAATATACACTATGATTTTGTGGATGCTTACCAGCATTTCAACATTGAGCAAGGCTCTGGGATTATCCGGACTGCATACAGTCTTGACCTGGAAAGGGAGCCAGTGCTTCAGTACAGAGTCCTGATGGTGCGGGCCTACAGTACAGCAGACCTCTGCAGTGGCACTGCCACTGTAGCAATCACTGTGCTGGATGTCAATGAATACCCCCCTCTCTGCTTCCCCCCTGTCTTGGTGCTAACGGTGTCGGAGACAACTGCAGTGGGAAAGTCTCTGGGTACCGTGAAGTGCTACGATCCTGATGCCAGTAAAACTGCCCTGGATTACCAGCTCCTGACCAACAGCAACTCGCTTTTCAAGTTCCGTCTGCAGAATGGCCAGCTGCAGGTGAATACCACTCTGGATTATGACAATGCTGCAATTGCCCTTAATAACTTTCAGTACCAGGCCACCATTTTAGTTAATGATAGTGGCATTCCCTCCCTCACGACTGCGGTTCGTGTGCTGGTGACGGTGACCCCCGTCAACGAGTACGAGCCTCAGTTTCAGGGTCCTTTTGTGttcaatgtaaatgaaaatacaccCAGGGCTGCTGTGATTGGGGCAGTGAAGGCCACTGACAGAGACTGGGATTTCAATGCCATCCGCTACTCAATCATCAATGGGGAAGGCTTCTCCATCGATCCTCAGAGCGGAGAACTTTACCTCAGAAGAAGCCTGGACTTTGAGCACCAGACCATACACCATCTGAGGGTGCAAGCTATGGATTACAACCAGGATGTAGACCCCAGCATGCAGAAGAGTACATCGGAAGACTTTTCCATCCATGTGCAGtacatttctctctctccaccctcACAGAACATCAATGATAACCCACCAGTCTGTAATCCATTTCTGTACGAATCAACCATTTACTCCACACTTGCTTCAGGAGAACCCATTATCACACTGAGCTGCATGGACATTGATAACAATGTGTTAACAGCAAAAATAACCAATGGTGCAGTGACTGATCGTTTTTCATTGAACGGCATGAATCTCATTTCCAAAAACATCTTCTCCTATAATCCTGAGGGGTTATTTGACCGCACAACCTTTGAGGTGAACATAGAGGTCTCAGATGGCAAGCACTCCACTGAAGTAGTGGCGATCATTCACGTGATTCCATGGACGACCACTGTtcccaccaccactactactaccacGACAAGGGCCCCACAGGTAGTGACCATAGTGCAGACGTACTGGGAGCCAGATATCTGGTTTGTGGCTGTCCTGACTGTCACTGGGGCTCTGGTCCTGATCTGTCTGGGCCTCCTCATCTGGAAGATCCTTGTTTGAGATATGAAGAGCGTTGAAGAGATTAGGACCAAGAACCCTTCTGCACAAGCCGAGTCGGTGATCCCGAGCCTGCAGGTCAGTCCAGTGCTGTGTCCGGTAGGTCGGCTCAGCTCGAGTCCAGGCAGGTGTCACAGCGGAGGAGAGTGTGGAGAGGGGAACTCAGAGATCCGATGAGATTTGATGGAAAAGCAGAAGATCCAGGTAAGGTTTGTTTCTCACAAGCCAGAGGGGTTTATCTTCATTAAGGGTCGGGGGCGCGCCGGTGGCTGTAGGAACAGAAGGATGTGCGTTTCATGTGTGGAGTGGCTGGCACAGGACGGGAATGGAGACCCCATCACAGTGTCATAG

Function

GO: NA

KEGG:

id description
K16504 CDHR4, CDH29; cadherin-related family member 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017084 True 2202 mRNA 0.49 16 44468119 44477790

Neighbor

gene id symbol gene type direction distance location
AMCG00017083 NA coding upstream 14625 44445621 ~ 44453494 (+)
AMCG00017082 NA coding upstream 56780 44388912 ~ 44411339 (+)
AMCG00017081 NA coding upstream 82133 44372888 ~ 44385986 (+)
AMCG00017080 camkv,LOC106582757 coding upstream 96611 44364606 ~ 44371508 (+)
AMCG00017079 NA coding upstream 307648 44146712 ~ 44160471 (+)
AMCG00017088 LOC100694221,LOC104965620,LOC102796420,LOC101486183,LOC103385919 coding downstream 178997 44656787 ~ 44658914 (+)
AMCG00017090 LOC103399082 coding downstream 215193 44692983 ~ 44714100 (+)
AMCG00017096 NA coding downstream 237601 44715391 ~ 44739801 (+)
AMCG00017102 grm2,LOC106565576 coding downstream 390124 44867914 ~ 44876540 (+)
AMCG00017097 grm2,LOC105017167,LOC106565576,LOC106583186 coding downstream 404075 44881865 ~ 44891870 (+)
G18127 NA non-coding upstream 80170 44387443 ~ 44387949 (+)
G18125 NA non-coding upstream 90891 44376993 ~ 44377228 (+)
G18084 NA non-coding upstream 267081 44116966 ~ 44201038 (+)
G18077 NA non-coding upstream 364720 44102026 ~ 44103399 (+)
G17987 LOC107575789 non-coding upstream 967643 43500170 ~ 43500476 (+)
G18186 NA non-coding downstream 145577 44623367 ~ 44714164 (+)
G18196 usp4 non-coding downstream 191633 44669423 ~ 44670878 (+)
G18197 NA non-coding downstream 193502 44671292 ~ 44671870 (+)
G18255 NA non-coding downstream 508006 44985796 ~ 44986081 (+)
G18302 NA non-coding downstream 765694 45243484 ~ 45243983 (+)
AMCG00017078 LOC106565757 other upstream 330188 44126214 ~ 44137931 (+)
G17697 NA other upstream 2070332 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 5213629 39239073 ~ 39254490 (+)
G17193 NA other upstream 5964487 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 9263887 35158597 ~ 35204232 (+)
G18192 NA other downstream 176862 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 471244 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 4894232 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 4924741 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 5235677 49713467 ~ 49727567 (+)

Expression


Co-expression Network