AMCG00017089


Basic Information

Item Value
gene id AMCG00017089
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44573524 ~ 44600280 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017089
TTTTCCTTCTGCAGTTCCCTGAGAAAGCAAACCACATAACTGCCTACCTGGCAGTTGAGGGGACTTAGTTTGTAGTCAGTTTGACATATAAAGCAACACCATGGAGACTGCTGAGTCTGAGATGAGCATCATCCCCAATGGAAAACACAGCGAAGAGATGAGCGTGCCAGTCAAAACCCTGCCGGAGGACGACCAATTTGAAGATGCTGAAGTGAATTTAGCAGAAAGCGAGGAGTTCCTTCCCAACACAGAGGGCAAGAAACCCATTCGCTTCACTGATTCAGGCACCACTGGTGTTACAGAGCTGTCCACACCGCGCTGCGGGGCACAAGAGAACTCTAACTTCCTGTTGACAGCTGTGGCTGCCCTCTCCTCATATTCAATTCATCTGCTGCTGAAGTCTTCGGGTGTAGTGGCCATGTCAAGTTACCTGTACATTGTCAAGTATGAGTTCCCACTTGTCATCAAGGCCTTCATGCAAGGCGATCAAACTGATGAGTGGTACCTCAATGGCAATTATCTGGTGATCATGGTGTCGGTCTGTGTCATCCTGCCGCTGGCCCTCATGAAGCAGCTGGGTTACCTGGGCTATACCAGTGGGTTCTCTCTCAGTTGTATGGTGTTCTTTCTCGTTGTGGTCATCTATAAGAAGTTTCAGATTCCTTGTCCTTTTACTGACTATTCGGCCAATGGCACTGAACTGTTAAACTACACTACTAGTCCGGATCCCTCCATTGGTTACAAGAATGGCCACATCGATGAAGAAGTGGACGCAGGTTGCGGCCCCCGCATGTTCACTCTCAACTCTCAGGTACAAGCCATCTTCTCTCATTCCAGCCCCAGCAAGAGGAAAATGCAGCACGTCTCTAACATCTCCATTGCTGTCATGTACACCATGTACTTCCTGGCTGCTCTTTTTGGATACCTGACATTTTATGACAAAGTGGAGGCTGAGCTGCTGCACACCTATAGCCGCATCGACCCCTACGACACGCTGATCCTGTGTGTGCGACTGGCCGTGCTCACTGCCGTCACCCTCACCGTACCCATCGTGCTCTTCCCGGTGCGGCGTGCCCTCATGCAGATGCTGTTTCCCAACAAGACGTTTAACTGGCTGCGCCACATCGCCATTGCAGTCTGCCTCCTCACCCTCATCAACATGCTTGTCATATTCGCACCCAACATCCTGGGTATCTTCGGGGTCATCGGTGCCACCTCTGCCCCCTGCCTCATCTTCATTTTCCCTGCAGTCTTCTACATCCGCATTGTGCCAAAGGAAGAGGAGCCCATGCGCTCCACTCCCAAGATCCTGGCTGCCTGTTTTGCTGGTCTTGGTATTCTCTTTATGATAATGAGCCTGAGTTTCATAATTATCGATTGGACGACGGGGAGCTCTAATGCTGGTGGTGCCCATTAGGCTCTGCCCCTCTTTGAGGGggatttaaatttgtatttctctttgtcttttttgtttttctcttggtCATTTTTAGAGGATGCACTATCTCGTCTGACAGGAAATACAGGCCAGGGTAGGGACTGGATGAGCTGGGTGTCCTAAAGTTTTTCTCCCCTTCTGAAAGACCCAGCATAAAGGTTTTGAAGATAATAAACCAGACTCTGGGAACCTGTGAAACAGTAGTGGCCTGCCCTAAAACTGAACTGGGGGTTAAAGTGAACACCTTAAGAACCATCAAAAACCTTTGCCCTAAATGGACTATATGGAAAACACCCTTAGAAATCTATAgcaattgcatttgaaaaaatcaGGGAAGAATTGATGTTGTGATTTGGCAGAGAGTCTAGTTTCTGACATTGGCAGAATACTcttcccttttaaaaaataatacaaatacaaatttggaTTTAcacacttttaacattttactaaaTATCTGTTAATGCCTCCGTCCTGTCCATTCATTTACTGGGAGTTTGACCATCTCTGCCAATTCCCCTGGTTTGAAGCAGGCGGGTGTAATTTTGCTATGCCGACAGTGCTGTTTAAGATCCTCTTATCTACAGTGCCATTGCAGCGATGCCAAAGTTGACCACGTCTGACATTTCAGTTTGACACTGAGGTTGGACGGACTTTCCGAAAAGTGATAGTGCATCCTTGtaaacatgaatgaaaataGACATTCAAGCTGGCTTGCTGAAAATGTAACACCTTTCCCCTCCTCTCCTAATATTTCTAATAATATGCCTAGGATACAGGCTTTTgtgggaaaagaaaaatctttattaaaaactaaaaacaaactttattttaaacctgaCATATGGCTATGGTGTTTGTGACAATTTTTTTAGAAGTAGTTAGAAAATGCcatgaccttttttgttttgttttgagttcaGTTACCAACAACTTTGCATAGTTACAGGAATAGAAGGAGATCTGAGGGTATGTTAaactttcaaaaacacacaTCCAGTTTccagaaaattattattgttcatttgTTAAGTTTGTTCACACTGTAAAACACAGAAGCTGTAACATTTTAGGCACTGGTCACGGTCTAGTTTTCTAAAGATTATGTTACTGAAATATGGAGACTGGAAGCAATTGTCCACTACAGCGTGCACttacacacaaaatacaggATAATGTTTTCTCAGCCCTGAATTGTCAGCTCACCCATTTTCTTAACTTAAGCCAGAAGTCTGTTTATATGTAACCCCAGTCCtatttaagattatatttttgttcttttgtattattgtattttaatgatttcatcAGTAGCAGCTGTTTAGTTCTTagtgtataataatacatttcttaatttatagAGATGGTTTGGTTCAATATAGTCATCGTTCAGTACATGATTGTATCCTTGTGAATGGCAAACGTTTTGATTCAGCTAAACATGCATGGACTTACACTAACTCGCAACTTTACGGAGaactttacatattttatgGAGAATATTCATGCTCTGTATTAATGGTTATAACATATATCCCTTATATAAGGAATAGGGGCTGACAACTTTAGAGTAGTGGTcatcaaccctggtcctggggagccccaatccacttaatcttataggtcaccttaaaccaccaatttataaatactgggaacacatgggagttATCAATCAATTAAGCATCGCAACTAAGTGAATTCTTGCCTCAAGAGGCAGAAGGTCTGCAGATGATTGATACAATGGcttttaaatgactgaatttgCCACACCTGCTTAGTTGTTCAGAgtgaaatacttccaggtgtttataaattggtgaaaTAAGGGTGGCCACAAAAACTTGCTGGATAGGAGCTCCTGTGGACCAGGTTTGGAGACCACTGCTTTAGAGGCTCCTGTCCCAAGACTTCCTGTCAGTCCTTTTGTTCTCATCTCTGCAGCAGACAAAGCAACACCTTTTGTTTTCTAGAGCGGCATTTAAGTAAAATGAACTAATTTTTCCATGTGGCTACTCCCAATGTGCAGTTTGCCAGAAACCTAATATACAAGAGTTTATAACTAATAAAAACATGGTagattttttacatatttaaacataagTGTGTAAAGTGGCATTTCTACCAGTTTAAATCTGACTGTACTTAACATGCTGCCCATCAATCCACCCTCTGTCATGACTTAGTTAGAAtcaactgtttaaaaatgtgatccACGTAATTACTGGACAGATTTCTTAAACAAATAGCTGATTATAGCAGGGTCCTGAAAGGAGCTAGTTTGAAATCACATGTTATTTAACCTTGATCTAAACTGACGTCACACAAGGGAAGGATGCAgcatgttttacatatatatatttttaatcttgaCCTGGGCTATATTGTGAGAAATGGAAGTCCAAACTTAGGACTGTATTGTCAGAAGAATGCAATGTGAGACAGGgtgatattttttgtaatatatctGTCTTGATATTGATAGCCCACAGTGGTCTGGTAACTGGTTCTCTTGTGTTTGCTCttgttttcttatgttatttCTGATCAACttctaaaataatgaaatgacaaTGAGTGcataacattttgaatgaattttGGGCTTACATCGcagcatttataaataatgtatataaatgtaaactcTTTCTATTCTTGGTGCATATCTAGCTTGTATAGTGTAAATAGAAAGCAGGGACAGTTTTAGTTTgacaataaaaagaaatgtcatttttaaaaa

Function

GO: NA

KEGG:

id description
K13576 SLC38A3, SNAT3; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017089 True 4181 mRNA 0.41 13 44573524 44600280

Neighbor

gene id symbol gene type direction distance location
AMCG00017087 NA coding downstream 7362 44565920 ~ 44566162 (-)
AMCG00017086 gnai2b,LOC108271854,LOC107723915,LOC107587570,LOC107696468,LOC107595419 coding downstream 70274 44483611 ~ 44503250 (-)
AMCG00017085 NA coding downstream 114970 44456778 ~ 44458554 (-)
AMCG00017077 NA coding downstream 447615 44102018 ~ 44125909 (-)
AMCG00017074 LOC103360486 coding downstream 660101 43881278 ~ 43913423 (-)
AMCG00017094 NA coding upstream 33292 44633572 ~ 44634705 (-)
AMCG00017095 NA coding upstream 39807 44640087 ~ 44651849 (-)
AMCG00017093 NA coding upstream 62139 44662419 ~ 44684879 (-)
AMCG00017092 emc3,LOC101173295,LOC106583189,LOC101079695 coding upstream 85336 44685616 ~ 44691949 (-)
AMCG00017101 rrp9 coding upstream 291831 44892111 ~ 44901396 (-)
G18164 NA non-coding downstream 185529 44387443 ~ 44387995 (-)
G18156 NA non-coding downstream 196303 44376997 ~ 44377221 (-)
G18101 NA non-coding downstream 434982 44136188 ~ 44138542 (-)
G18066 NA non-coding downstream 681617 43837177 ~ 43891907 (-)
G18015 NA non-coding downstream 940102 43633221 ~ 43633422 (-)
G18219 NA non-coding upstream 199174 44799454 ~ 44829026 (-)
G18352 NA non-coding upstream 1252782 45853062 ~ 45916620 (-)
G18364 NA non-coding upstream 1501680 46101960 ~ 46102188 (-)
G18366 NA non-coding upstream 1501982 46102262 ~ 46106593 (-)
G18405 NA non-coding upstream 1839789 46440069 ~ 46454396 (-)
AMCG00017067 sumf1 other downstream 913922 43633770 ~ 43659602 (-)
AMCG00017060 NA other downstream 1264898 43305697 ~ 43308626 (-)
AMCG00017061 NA other downstream 1286921 43280237 ~ 43286603 (-)
AMCG00017051 NA other downstream 1599091 42948991 ~ 42974433 (-)
G17842 NA other downstream 1708908 42808711 ~ 42864616 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other upstream 53175 44653455 ~ 44656905 (-)
AMCG00017105 srgap3 other upstream 518010 45118290 ~ 45161137 (-)
AMCG00017158 NA other upstream 3888847 48489127 ~ 48494407 (-)
AMCG00017178 NA other upstream 4886917 49487197 ~ 49494144 (-)
AMCG00017232 NA other upstream 6583951 51184231 ~ 51212373 (-)

Expression


Co-expression Network