AMCG00017091 (brk1,BRK1,LOC106565571)


Basic Information

Item Value
gene id AMCG00017091
gene name brk1,BRK1,LOC106565571
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44653455 ~ 44656905 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017091
CTGGTTTATCTTTTTGATCATGAACTACTTTTAGAGTACGCACAATTGTCCCTCGGGTATATCGTATATGTTTAAGTTCAGTTTAATATATAAACCTAGGCATTTGCATATGTGTAGAAGGAAGCGAGATAGCAAGATAGGTCAGATATCAGTTAGAGAAGATGTCGGCTTTCAGCGTCACTTTCAGCTGCACATCCACTAGACTTAACTATTGTGTTTGATAGTAGACAGATACGGATAACAGAGGCACCAGTGCGCATGCGTACTGTGGCGTCGTTGCAGTGACAGttaaTACATTCGCCTACGAAATACATATGTGATGTGATGGTCATTGTGAGGACCGAGGCGCTCAGCCGTGTGTGTCCGCCCCCTGCTGCTGGAACTGGGGAGCAGCTGTGACTTTTCTGCGGGTAGACGGCGCTCGGTGTGCAGCccaaatctgaaagaaaatggcCGGCCAGGAAGATCCAGTTCAGAGGGAGATCCACCAGGACTGGGCAAATCGAGAGTACATTGAAGTCATCACCAGCAGCATTAAGAAAATCGCCGATTTCCTCAACTCTTTCGATATGTCCTGTCGGTCCCGACTGGCAACTCTGAACGAGAAGCTGACCGCTCTGGAGAGGAGAATCGAATACATCGAGGCTAGAGTAACAAAAGGGGAGACCTTAACTTAAGACTTGAAGGAATCCTGAATCCTCAAGAGGCTGGACCAGCTCTGTCCATCAATGGCACCCAGACGTCACTTTTTTTCCatcttatattttgtttttaatgcctgTGTGTTTTAGACCTGTTTCTATTTGCACGGGACAGCTGAACAGCCTTTCCAAATCAGATGTGTGCTTGTTATTTTAACCTCAGGCTGTCTTTTACGTACTAAAACATTTTGCTTGATATTGGACACTTGGGCAATTGGAGGCCTAGGTTAGGCACTCTCCTCTGATTTTGATCCTATGATGTAAGCAATAAGAGTAAAGGTGTATGGGAGCTGCCTGAGGACTAGGAAGTTCTAAGTTTTAAAACTGAGAACTGTAAGCACACACTTTGGGTGGCTGGATCCTGACATTAATAAATCTACTATAAAGgatcaaaatgtttattgtatcCAAGTTTAAAAGATTTTCTCCCACCCCCCTGCCCACACCCTTCACTTCCCTTAATCAGGAAGTGTTTGGTCTCTCCAGTGAAGCCATGCTTTCAGAAGGCACAGAGAAACCTTGTGCGGCTGAAGATAATGAACATCCCCCATCTAGCACGGGCAGAGGAAAGTGAAGGGAGAGTCCAAAAGTGCCAAGTTCATTCTCTTTCTGTGGCTATAATTTCTCTCTgtcttggattttttttgtatgtgttcttGTAAGAGTAACAATTGTATTTACCATGTGTTTCAAAAATTAAAGTTTAAGAGAAAAGGGG
>TU22583
GCTGTGACTTTTCTGCGGGTAGACGGCGCTCGGTGTGCAGCccaaatctgaaagaaaatggcCGGCCAGGAAGATCCAGTTCAGAGGGAGATCCACCAGGACTGGGCAAATCGAGAGTACATTGAAGTCATCACCAGCAGCATTAAGAAAATCGCCGATTTCCTCAACTCTTTCGATATGTCCTGTCGGTCCCGACTGGCAACTCTGAACGAGAAGCTGACCGCTCTGGAGAGGAGAATCGAATACATCGAGGCTAGAGTAACAAAAGGGGAGACCTTAACTTAAGACTTGAAGGAATCCTGAATCCTCAAGAGGCTGGACCAGCTCTGTCCATCAATGGCACCCAGACGTCACTTTTTTTCCatcttatattttgtttttaatgcctgTGTGTTTTAGACCTGTTTCTATTTGCACGGGACAGCTGAACAGCCTTTCCAAATCAGATGTGTGCTTGTTATTTTAACCTCAGGCTGTCTTTTACGTACTAAAACATTTTGCTTGATATTGGACACTTGGGCAATTGGAGGCCTAGGTTAGGCACTCTCCTCTGATTTTGATCCTATGATGTAAGCAATAAGAGTAAAGGTGTATGGGAGCTGCCTGAGGACTAGGAAGTTCTAAGTTTTAAAACTGAGAACTGTAAGCACACACTTTGGGTGGCTGGATCCTGACATTAATAAATCTACTATAAAGgatcaaaatgtttattgtatcCAAGTTTAAAAGATTTTCTCCCACCCCCCTGCCCACACCCTTCACTTCCCTTAATCAGGAAGTGTTTGGTCTCTCCAGTGAAGCCATGCTTTCAGAAGGCACAGAGAAACCTTGTGCGGCTGAAGATAATGAACATCCCCCATCTAGCACGGGCAGAGGAAAGTGAAGGGAGAGTCCAAAAGTGCCAAGTTCATTCTCTTTCTGTGGCTATAATTTCTCTCTgtcttggattttttttgtatgtgttcttGTAAGAGTAACAATTGTATTTACCATGTGTTTCAAAAATTAAAGTTTAAGAGAAAAGGGGCTTGACTTCTTTCCTTGGGtgtgtgctgtttgtgttgtggcATGGTAGTTTCCTCTTGTTCTGTAATTGCATGTGGACACAGACACGTGTAGTTAATTCTAGCAGTATAGTTATTAGCATCTAAgtatgcagtatatatttttgctatataaaaatgtttacactTCCTTTTACATATAGTGCAGTTGTTTAGTGAGGTGCATTGGATAAAGCTGCCAGGTAAATAATCATATAACATATCTTTATACATGCATGAACACCtatacactgacacaaaca

Function

symbol description
brk1 Predicted to be involved in cell motility and regulation of actin polymerization or depolymerization. Predicted to act upstream of or within actin filament organization. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of SCAR complex. Orthologous to human BRK1 (BRICK1 subunit of SCAR/WAVE actin nucleating complex).

NR:

description
PREDICTED: protein BRICK1 isoform X1

GO:

id name namespace
GO:0048870 cell motility biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0001701 in utero embryonic development biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K05752 C3ORF10, HSPC300; chromosome 3 open reading frame 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017091 True 1419 mRNA 0.44 4 44653734 44656905
TU22583 False 1306 lncRNA 0.42 3 44653455 44655994

Neighbor

gene id symbol gene type direction distance location
AMCG00017095 NA coding downstream 1606 44640087 ~ 44651849 (-)
AMCG00017094 NA coding downstream 18750 44633572 ~ 44634705 (-)
AMCG00017089 NA coding downstream 53175 44573524 ~ 44600280 (-)
AMCG00017087 NA coding downstream 87293 44565920 ~ 44566162 (-)
AMCG00017086 gnai2b,LOC108271854,LOC107723915,LOC107587570,LOC107696468,LOC107595419 coding downstream 150205 44483611 ~ 44503250 (-)
AMCG00017093 NA coding upstream 5514 44662419 ~ 44684879 (-)
AMCG00017092 emc3,LOC101173295,LOC106583189,LOC101079695 coding upstream 28711 44685616 ~ 44691949 (-)
AMCG00017101 rrp9 coding upstream 235206 44892111 ~ 44901396 (-)
AMCG00017100 oxtr coding upstream 310368 44967273 ~ 44977924 (-)
AMCG00017106 NA coding upstream 403069 45059974 ~ 45068123 (-)
G18164 NA non-coding downstream 265460 44387443 ~ 44387995 (-)
G18156 NA non-coding downstream 276234 44376997 ~ 44377221 (-)
G18101 NA non-coding downstream 514913 44136188 ~ 44138542 (-)
G18066 NA non-coding downstream 761548 43837177 ~ 43891907 (-)
G18015 NA non-coding downstream 1020033 43633221 ~ 43633422 (-)
G18219 NA non-coding upstream 142549 44799454 ~ 44829026 (-)
G18352 NA non-coding upstream 1196157 45853062 ~ 45916620 (-)
G18364 NA non-coding upstream 1445055 46101960 ~ 46102188 (-)
G18366 NA non-coding upstream 1445357 46102262 ~ 46106593 (-)
G18405 NA non-coding upstream 1783164 46440069 ~ 46454396 (-)
AMCG00017067 sumf1 other downstream 993853 43633770 ~ 43659602 (-)
AMCG00017060 NA other downstream 1344829 43305697 ~ 43308626 (-)
AMCG00017061 NA other downstream 1366852 43280237 ~ 43286603 (-)
AMCG00017051 NA other downstream 1679022 42948991 ~ 42974433 (-)
G17842 NA other downstream 1788839 42808711 ~ 42864616 (-)
AMCG00017105 srgap3 other upstream 461385 45118290 ~ 45161137 (-)
AMCG00017158 NA other upstream 3832222 48489127 ~ 48494407 (-)
AMCG00017178 NA other upstream 4830292 49487197 ~ 49494144 (-)
AMCG00017232 NA other upstream 6527326 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 6773782 51430687 ~ 51435239 (-)

Expression


Co-expression Network