AMCG00017092 (emc3,LOC101173295,LOC106583189,LOC101079695)


Basic Information

Item Value
gene id AMCG00017092
gene name emc3,LOC101173295,LOC106583189,LOC101079695
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44685616 ~ 44691949 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017092
CACGCCATTGGGTGGCACTGTAGTTTAAATCCATGCTTGTTTCGCTGCTGTGGCGACCGTCTTCCTGGCCCTCTGCTGTCTCTCGCATCGTCTGGAACCCGATTTCCTGGGTTTGAACTCGGTGGCTGCTGATGCAGCTTAACTGCGAGGATCTTAGTGCAAATTAAGGAAGGCAATACTATCAGTGCAAAGATACCCCAGGCTGCCATGGCTGAGCCCGAGCTTCTCCTGGATTCCAACATCCGTCTTTGGGTGGTGCTGCCCATCGTCTTCATCACCTTCTTCGTTGGCGTGATCCGCCACTACGTCTCCATCCTCCTGCAGAGTGACAAGAAGCTCACACTGGAGCAGGTGTCTGACAGTCAGGTCCTGATCAGAAGCCGAATTCtaagagaaaatggaaaatacatccCTAAGCAGtCCTTTCTGATGCGGaagttttatttcaataacCAGGAAGATGGGTTTTTTAAGAAGACAAAAAGAAAGGTGGTTCCCCCTTCCCCAATGACAGATCCCAGCATGTTGACCGACATGATGAAGGGCAATGTGACCAATGTACTTCCCATGATCCTCATTGGAGGCTGGATCAACTGGACCTTCTCTGGGTTTGTCACCACCAAGGTGCCCTTTCCTCTCACTCTGCGGTTCAAGCCCATGCTGCAGCAGGGAATTGAGCTCCTCTCTCTCGATGCCTCCTGGGTGAGCTCAGCCTCCTGGTATTTCCTGAATGTGTTTGGCCTACGAAGCATGTACTCTCTCATCCTCGGACAGGACAATGGTGCAGATCAGTCCCGGATTATGCAGGAACAGATGAGCGGAGCTGCCATGGCCATGCCTGCAGACACCAACAAGGCCTTTAAGGCGGAGTGGGAAGCGTTGGAGCTGACGGACCACCAGTGGGCTCTGGAGATTGTGGAGGAGGAGCTGATGAGCAGGGAGCTGGACCTGGAAGGAATGTTCAGCAGCGAGTTGCCCACCGGCATCTTCTGATTGGCTGAAGTGTTTACTGTAGGAGCCATGCTACGGAGTTCAGATGTTTAGTCAGATAGGGAAAACATTGGAGCGAAGAGCTGTATGAAGGAACTATCAGGTTATTCTGAATGAGCTTTCTAGGCTGGGTTGAGTATTGTTGATTTTAAGAGGGATTTATCACTTCAGCAGCAGCTGCCTATCTCAGTTATGTAGAGCAGTCTCCATTAATACGATGGCTCTACAAAGGTCATTGCCGAGTTTTGATCATAGGGAGCTTAACTAAAACTCTTAGGTGAAACCAAAAATGGGGGTATGGGTGTATGTAATAAAAGAGCCAGTGGCATGAAGACCTCTCTCAGAGAGCTGCAGCCAATAGAAATCACAGCCCTCATTCCCGTGCTGAACTTCTAAATCACCTACAATCAATATGACTTAACCCATCCCCAAGGGGTTACTACCACTAACAAAATAGTCGTTTCATGCAGCTCGAAGTGTAGTGATGCTACAAAACAGGGCTTTGCGAGAAGGCCCTACCTCAATTTCagttccttttatttttgtgccaCCCCTTCTTCTTGTCTAAGagttctgtttctgtctcttttcctctccccgcccccctcctccctcttaTTACAGTTTGAATTCTTGAGCTGGAAACGAGGCTAGAAATCTGCCATTGCATAAATCCAACATCGtctctctgaaatgtacatgttCATGTGTGTAGCATTCACCTTGTAATGTTTACTGcagtgtgttattttatttattttgtagagtatttgtttttgaaacattcccttctgttttgtaaaatgacTCGGTTTTGACAAGAGTTGTGCTTCTGAGTTTCATTTCCTACTACACTTGCTACATAAGTGTTACAATTAGGGAGGGAATACTGTAGACCACCAGGGTTTCTGGTTGTCATGGTAATGGAATCATTTTACAATGCCCACTCAAGGTATGAGAAGTGGAGTAAGTTAGTTTACAAGTTGTTTAAGATCAATGGTTAGATCATAATTAACAGGTTGGGGACCACTGATCTAGAGTAAGGTTCTATGTAACATGgtttaggtttaaaaaaaaaaaaaaaatgaaagcacataaaaagaaaatacaattcaatacattagcctacattaaatgcacattattattgGTTATacctgtattttaataaaattacatgTACAATAATATTGTTGGTTACTGAAAGACAAGCTGCTCTCTGCAAGAAACAGTTTTTATCAACAGGGCCtctattgaaatgtaaagtaaGTCTGCTTGAAATGCAGGTTCATAACCCAAAAGATCAGAAGAGGCTTCAGAGCTGGTTTCCCAAGTTATTGCTGTGAGACTCAATTGTGGTAGGAAAATCTAATCTGCCTTTAGGTGTTTTTGGCATAACATACCTGTGTATGCCAATGTATTTCCTACAATGAATAGGATGTCTGACAGGTCTTGTGTGGTGTGAAACTGTTGAAACAATTGGGGTGGTGCCAGGGCACAGCTACTATGACTGGCTCTGACTCCAGTTCAGATCAGCCCGAGGTGGCTGTGGCTGTATCAGAAAGGGATGTAACAGGGTGTGTGGTATAAACATGCTATTAGAAGATAGCTTAATCTTCAGTTTAACTACTGCACCTCCACTCAGCAAATTTGGTTTAATGTATAGGTGAGGTGTCAGAGTTTT

Function

symbol description
emc3 Predicted to contribute to membrane insertase activity. Acts upstream of or within photoreceptor cell maintenance and retina development in camera-type eye. Located in Golgi apparatus and trans-Golgi network transport vesicle. Is expressed in several structures, including brain; digestive system; eye; immature eye; and yolk syncytial layer. Orthologous to human EMC3 (ER membrane protein complex subunit 3).

NR:

description
PREDICTED: ER membrane protein complex subunit 3

GO:

id name namespace
GO:0045494 photoreceptor cell maintenance biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0030140 trans-Golgi network transport vesicle cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K23564 EMC3, TMEM111; ER membrane protein complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017092 True 2674 mRNA 0.44 9 44685616 44691949

Neighbor

gene id symbol gene type direction distance location
AMCG00017093 NA coding downstream 737 44662419 ~ 44684879 (-)
AMCG00017095 NA coding downstream 33767 44640087 ~ 44651849 (-)
AMCG00017094 NA coding downstream 50911 44633572 ~ 44634705 (-)
AMCG00017089 NA coding downstream 85336 44573524 ~ 44600280 (-)
AMCG00017087 NA coding downstream 119454 44565920 ~ 44566162 (-)
AMCG00017101 rrp9 coding upstream 200162 44892111 ~ 44901396 (-)
AMCG00017100 oxtr coding upstream 275324 44967273 ~ 44977924 (-)
AMCG00017106 NA coding upstream 368025 45059974 ~ 45068123 (-)
AMCG00017107 LOC106582845,LOC106565727 coding upstream 553112 45245061 ~ 45257864 (-)
AMCG00017108 NA coding upstream 601710 45293659 ~ 45305316 (-)
G18164 NA non-coding downstream 297621 44387443 ~ 44387995 (-)
G18156 NA non-coding downstream 308395 44376997 ~ 44377221 (-)
G18101 NA non-coding downstream 547074 44136188 ~ 44138542 (-)
G18066 NA non-coding downstream 793709 43837177 ~ 43891907 (-)
G18015 NA non-coding downstream 1052194 43633221 ~ 43633422 (-)
G18219 NA non-coding upstream 107505 44799454 ~ 44829026 (-)
G18352 NA non-coding upstream 1161113 45853062 ~ 45916620 (-)
G18364 NA non-coding upstream 1410011 46101960 ~ 46102188 (-)
G18366 NA non-coding upstream 1410313 46102262 ~ 46106593 (-)
G18405 NA non-coding upstream 1748120 46440069 ~ 46454396 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 28711 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 1026014 43633770 ~ 43659602 (-)
AMCG00017060 NA other downstream 1376990 43305697 ~ 43308626 (-)
AMCG00017061 NA other downstream 1399013 43280237 ~ 43286603 (-)
AMCG00017051 NA other downstream 1711183 42948991 ~ 42974433 (-)
AMCG00017105 srgap3 other upstream 426341 45118290 ~ 45161137 (-)
AMCG00017158 NA other upstream 3797178 48489127 ~ 48494407 (-)
AMCG00017178 NA other upstream 4795248 49487197 ~ 49494144 (-)
AMCG00017232 NA other upstream 6492282 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 6738738 51430687 ~ 51435239 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location