AMCG00017093


Basic Information

Item Value
gene id AMCG00017093
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44662419 ~ 44684879 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017093
GAGCCGCGTGCCCGCGGCCCGGAGTCAGACGCGGCGCGATGGCTGAGGGAGGCGGACCCGAAGCGGGCAGCGGGGCAGAGCCCGACCCGGAGCCGGTACCCTGTCAGAAACCCATACCTACTACCGAAAGCCAGAAACAAAGCATCGGAGCCCTACTCAAAACACCGCTTCGTGGTTGAGCATGGCATGTTCGTGAAGCACTGTAAAGTTGAAGTCTACCTGCTGGAGCTTAATCTCTGCGAAAACAATAACATGGACAATGTGGTGACACGACATTTCAGCAAAGCTGATACCATAGACACAATTGAAAAGGACATGAGAACGTTGTTCGAGATCCCAGCAGAGAAGGAAACTCGTCTGTGGAATAAATACATGAGCAACACATACGAACAGCTGAACAAGCCGGACAGCACTGTGCAAGATGCCGGCCTGTTTCAGGGACAGGTGCTCGTGATCGAACAGAAGAATGAGGATGGCACGTGGCCCAGGCAAGCCAGTCACCCAAAGTCTAGCACAGCCACTTCCAGGAATTTCACTACCTCCCCAAAGCTTTCATCCAACTCTTCAGCCACCATTTCGTCTACTGTAACCAATGGGGACAGCAGCAACTCCAGCTACACTCTGAACAACAGCACCAGCGGCTACAACTCCTACAGCTCATCGTACAACTATAGAGAAACTCAGACACAGCCAGGTCTGTGTGGTCTCAGCAATTTGGGCAATACCTGCTTCATGAACTCAGCATTGCAGTGCCTGAGCAACGCCACCCCCCTGACAGAGTATTTCTTAAAGGATGAATATGAGGCAGAGATAAACCGTGAGAACCCGCTTGGCATGCGGGGCGAGATTGCAGAGGCCTATGCGGACTTGGTAAAGCAGATGTGGTTGGGCCGCAGCAGCTACGTGGCTCCCCGGTCATTCAAGACCCAGGTTGGCCGCTTCGCCCCTCAGTTCTCGGGTTATCAACAGCAGGACTCCCAGGAGCTCCTGGCCTTCCTGCTGGATGGACTCCACGAGGACCTCAACCGCGTCAAGAAGAAGCCATACCTGGCACTAAGGGATGCGGAGGGCCGCCCAGATGAGATTGTGGCAAAGGAAGCCTGGAAGAATCACCGTCTTCGGAATGACTCAATTATTGTGGACATCTTCCACGGGCTCTTCAAATCCACCCTGGTGTGTCCGGAATGCGCCAAGATCTCGGTCACCTTTGACCCCTTTTGCTACCTCACTCTTCCGCTGCCCATGAAAAAGGACCGTACCATGGAGGTGTTCCTGGTCCGCACAGACCCCCAGTCCCGGCCTATGCAGTACAGAGTAGTGGTCCCCAAGCTGGGAACAGTGACAGACCTGTGCAGTGCATTGTCTAAACTCTCTGGAGTCGCAGCAGATAATATGGTAGTGGCAGATGTATACAATCATCGGTTCCATAAAATCTACCAGCGGGATGATGGACTCAACAACATCATGGACAAGGATGACATTTTTGTGTACGAGGTGGGAGAGGTGGATCCAGAGCGGATCAACCTGCCTGTTTACTTCAGGGAGCGACACATGAAGCATTCTGGTACCTCCACGGGAACACTGCTGTTTGGGCAGCCCCTGCTCATCACTGTCCCCCAGAAGAGTCTGGCTGTCGACTTTCTGTATGAGAAAGTGCTGGAGAGAATTGGCGCAGGGACTGCCAGCACCGCCACTGGCAGTAGTCAGCCACAAACAAAGCAGCCAGGGACCTGCAATGGCCCCAATGGGGTTTGTGAAGGGGAGGACGAAGCCATGGATCATCAGGAGGAGATCAGCCTGGAGCCAGACCACAGTCAGTCGGAGGGCTCAGCGGGGGAGGAGGACAGCGAGGACCTGGAGAACGGGCTAGTGGGCAACACGCCAAAATCCTCCGTCAAGCCAGGGACCTGTCGGGTCAAGCTGTTTTCCTTCAGCATGGTGAATTCATACGGAACCGCTGACATAAGCCCCCTGCCCACACATTCCACAGTGGCAATTGACTGGGATTCTGAGAAGAAGAAACTCTACTATGATGACCAAGAAGCAGAGGCCTTTGAGAAGCATGAGAGCATGCTGCAGCACCAGAAGAAGAAGGCCACCGTGGCCCTGAGGGAGTGCATTGAGCTTTTCACCACAATGGAGACACTGGGAGAACATGACCCCTGGTATTGCCCCACTTGCAAAAAACATCAGCAGGCTACAAAAAAGTTTGATCTGTGGTCACTGCCTCGCATCCTGGTAGTACATTTGAAACGCTTCTCTTATAACCGCTGCTGGAGAGACAAGCTGGACACTGTGGTAGATTTCCCAGTCAGAGATCTGAACATGTCCGAGTTTGTCTGTGATCCGAAGGCAGGGCCCTATGTTTATGACCTCATTGCTGTGTCTAACCACTATGGGGGAATGGGTGGAGGGCACTACACGGCTTATGCCAAGAATAAATCTGATGGGAAGTGGTATTATTTTGACGATAGCAGTGTCTCGTCTGCTACAGAAGATCAGATTGTGacaaAGGCAGCGTATGTACTGTTTTACCAGCGCCGAGATGGGGAAGAGCCCCAGAGCTCTCCTCCTTCAGCCTCACTGGGAGAGGCTCCAGAGACGGGCGATGACCACATGGACACCAACTGAAGGGCCAAGGATTCAGGGACATATAGTGATGCAAAGACGTACATGTAAATGCAGACACGTACCTACTTCAGCAATTTAAACCTCTGTACTGaatcaacatttatatattttttttctttcacatgcaCCATcaccaatataaaaaaaaaaaaaaaaaaaaaaaaaacataggtgTTTGATAAATAAATTGAGCAGCTCCTTTATGGGGGTTGGGCCAAGCGGATGTTTGGAACTTATTACCATTGCGTATATTTCACGTTTGAGAATAAAAGGCAAATGGCACACTGTAACCTCATACTAGACGACCAGAATGTTAGACCTCACTTAAACTGCATAGATTAAAAAATTATTTAACTTGACTGGTAACCACTAGAAAAATCAGAAGAAGCCAAATATGCACATTTTCAACCAAAGCGTTCCAAGATCTGCACACTTAAGCATATTCTAGACTTGCCAACTGTAttgagagaggaaagaaaaacacaaaaaaaaaaaaaaaattaaatctgtattcACTTGTTGACAAACTGGAGTTGTTCCAGTACAGAGATTAATTCACATGCAAGACCATTTTTAATACTGAGTGCGTGCACACACATTGAGAATCAAACACATCAAACACTGCCCATATAATCGCATGGAtcctgtcaactgtgctacttCAGGAGAATGGAACCATCCAATTACGGACCTGTAAACCGGAGTGGAGGGAAGCTCTGGTTTCCCCTTTGAGATCACCTTAGCCTTGTTTTGGGTATCACTGCAGCGATCAGTTCCCTCATGCAACATCCTTGGCAGCAATGTTTTATCCCTTGGCTGACTGTGTTTCCGGCGACTTCTTAATGCCTGCAGTGTAAGGAGCACACCACTTACAGGAGCTGAAGAAATCACACCACTTCAGCACATATGTCCACTCTGTACAAGCTGCCCGTGTTCCAGTTTTGTGggctctaaaaaaaaaataataataataaataaatcctgtcACCctctggaggaaaaaaacaaaacaaaaaaaattacgTAATAAATGTGCTGCTCTATCTGTGTAACACAGAAGCACCAGCTGCCTTTTTCAATGAGAACTCTTTAAAAGCAGGAACAATGTCTGCAGAAGACTtttaggattttctttttcttcaggaGGATCAGCTTGcgatgtaaaaacaaaatgcgtGTGACCAGTGGTCGGCAATTACTGTTCCTAAGTTGGCATGGCTTCGAATCAAGACTCTCGACCACTTTCACTCCTTCCCGGGTGGAGATATGGTCATGTAGACGTATTCCTAGACGAGGTAAAGCTCAGATCCTGTTGTCAGTAGTTTGACAGCATAGTCTACTTAAAATAACTGCTTTGAGATAAACTATAACTTCCTAGAAGGCCAGTAATGGTTTCCACCTCTGCCATTTTGACAGCTGACTCGGCTCCCCTTCTGGACGTCTGTCTTAATGCTGACTAGGATTTTCATCTTGGGTGCTCTGGCTGTTCCTCTTAAGTACTGTAAtagatgtgcatttgtgttctgaGAAAACTGCTTTGGggataaaaaacatttttgtcctttttgtttagttttttttttttttttaaagcctgaaaaatacaaatttcaaattCTTGGGAGTGGTGCTAAATGTAGTGAACTAAAAGCTGCAggggcaaaaaaaaacacccaatgGGACTTTTggactgtgctgtactgtagtaaAGGGCATGGGCATGCATGGGGATATGCTTGCTTCACCACAGTCATAAGCAACTATATGTATTGTCTTGTACACTGATGacattttagtttatattaaaatatatatatagctgatGGTAAAGGAAAGGTGAAGGGTGTGAAGGCATTAAAACTTTTTAATCCAGGTTAAAATCTGCATCAAAACCTTCTTTAGAGGAACATGGGGACTACATGCTTAATAGGACATGCCTGTATTTCATGTAATCTTTAAGgtgcatttgtattcattttactaTAGGGTAAACAAGCAGACCTAGAGTAACTGGTTTTGGCAGAGAGAAAAGTTAATATAATTCAGAATATGTGGACAAGCATCAGTTTCTTTTaacatcaaaaaataaactttcagcTCAGCGGATTagattatttgaaaatacagcCTTTCTTCAAACTGACGGATGGTGTCCCACCTCACTGTTTCTTGTCTGGCAGTTCTGCATTGGTATGTCATAGCGTGTAACCTTATTTAAACCGTTCCTGGCGTTTCTTTCCTGACCTTTTCAATTTTTTGGGCCTATTGTCCAAATTAAGTTTCACAAAAATATTGCATGTTGCAATCCTGCTTCTTGGGGAATATTCATTGTTTACACTgaagaaaatgcaatgtaagAATATAATCAGTAGATAGAAATAGGTGCCTTCAATCTGGGAGTAATGAGTAGATAGgttagtatttaataaaatccttatccatatttttaaatactacactgctatataatacaaaatcagGCTCTTCGTATTGCGAAAGAACAAGCCTGTCTATACAATCGATCTGATATGAAATATTGATGATTTAATGCAGAAGatgcttattttatattttaataacctGTAAAATGTCCcagtttaagtttgtttttcatttaaagtgaAACAAAGATGTACACAGTTCttagtcaaatacattgtttaggATAAAAGTAAACAGCCATTTTTGATATTTATACAAAGAACTACTGATGGTTGAGCTACATTTGGATTTGCTGTGACATTCtgcttttttttgggggggaagtGAATGTTTACCAAAGTGAAGGGAAGTGTATTAGTTAATAAGCTAAATTTACTGaactataatataaacaaacaaataaaactaggAATGTGATTTCACTATATATTTAGATaaggttgtttttgttgtgctctactcaaaaaagtgaaaaatgtaaaatctaaaaCTTTTTTATCCTTACAGATGATTACTACccgtgatgtgtgtgtgtgtgtgtgtgtgtatatatgtatatacacacacacacacacacatacatatacacacattttcaatttttcttttaatatgtttattactCTGTAGAAGTGTGGCTCCTACCAATGACAGATCTGAATAACTTaatgtgaaaaactgaaaaccacatttttgtttttagttaaaaaTCCCAAATGCTGGGTTTAATTCACATTAACTAAACCTTGAATTAACTTACACAGTTTCTAGTTACAagtgcaagtttttttttttatatataaattaattgcatGCATTTCCTGCCTGACCAAATGAAGAAAAGCTGTATGTATTTAGTCAATTGGAAAGGTCAAATCTGGTTCAGGCAGCCTTTTTCTGATTGCaaccagtttgtgttttttaagcagTACGTGTACAATAAAGGAAGTAACAGCAGGGGTGTTTGTGCTTTAAATATCCAATTTaaggcttttcttttcttttcttttcttttgttttcttttaaccaATTCAGTAGACCAACTTTAGCAGCTTTAACTGAACACTTCAACTTTAATTTACCCCTAGCATGTCTGTAATGTCTCCCAAGGTTGCTTACTTAAAATTGGCAGCCAAGCAAGGTATTTCTATAGAGACCTATGGGATTCCataaaattatgcttttttgttttccccttctgAGTGTTTGTTCTGCATAACTAAAAgccataattattttataataacaagCGATAATTCACACCCAACCCATGGCTTGCTTTGAgtgtcattaatttatttgtatacaaCTGCTTACAGGTTGGAATGCATTTGCCATTTTGTAATGGCTTACAGTGTGCGACATAATAAAACAGTGCCGTAATATAATGTTCTTGTTATTGGGTTGTTTACTTAAAATGGGTTTCTCATTCcatttgtacttttgtaaagTATTATGGATATTCATTGGTATGGGCTACGGATATTTTTCTCCAAATCATATCTTCTGCAAAATAGTTATTTTCTaaccaagaaaaaatataaaaatacataaaagctgTTATGGTGTGTGAATTTTGAGGTTCTAGCTTCATATAACTTAAAGTATAGAGTTGCaccattatatttttcattattctgTTCAATAACTTTTGCTCCAGTAGGGTTGGGGGTTGCATTCTGTAATTCAAAAAAGGAGTCTTGGATTGTTGAGATATGGTGTTCACTGGCTCCctgagtttttatttaatgtctggGTTGATTGTCACATGTGATGCAGTGTTCATGAAATCACTTGACACCCCATAGTgcttacattatattatttgagCTTGGGTATTAAAATTCAGAATCTCAAAGCTTTTATGGTGACACATTTTCCCTTGTATACATACACCTGGCAAAATAAAGTGCTCTGGTTTAAATTTGGATCTAAGCATTACAGCcaagtgcaatacatgtttacatccatgtcaaaataatgtaatcattgAACTTGAATCCTCAATCTGAAATGTGTGGGAGGTATCCATAATTTAAAATCCTAGTGTAGAGACCTATGGGATGCCTTAGCTcatctttttcattctttgtaGCCATAATTACTCATAAATGGGGAAGAAActatatgaatattaattagACATTTCCCGTAGTTTCATGAATACATGAAAGCCACTCCTCTGATTAACTTGGAATGTATGAGACCTCTCTTATGCTCAGTACTTGCACCTTACTGAAATATTCCAgtcttttaacttttaaattatttttatttttcttgtcgggatgttacatttgtatttatgacCTAGACACCCACCCCCTTGTAAAGCAGTCGGAAAGCAGTGAGGCACGCCAGAGCCCCAAATTAtgttgtacagtacagtatgtatgGAGAACTATGTAATAGGGTTCTAATTCATCAGTAAGGCAAGATACTGGTGTGTTTGTAAATTGCtgg

Function

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K11835 USP4_11, UBP12; ubiquitin carboxyl-terminal hydrolase 4/11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017093 True 7537 mRNA 0.42 20 44662419 44684879

Neighbor

gene id symbol gene type direction distance location
AMCG00017095 NA coding downstream 10570 44640087 ~ 44651849 (-)
AMCG00017094 NA coding downstream 27714 44633572 ~ 44634705 (-)
AMCG00017089 NA coding downstream 62139 44573524 ~ 44600280 (-)
AMCG00017087 NA coding downstream 96257 44565920 ~ 44566162 (-)
AMCG00017086 gnai2b,LOC108271854,LOC107723915,LOC107587570,LOC107696468,LOC107595419 coding downstream 159169 44483611 ~ 44503250 (-)
AMCG00017092 emc3,LOC101173295,LOC106583189,LOC101079695 coding upstream 737 44685616 ~ 44691949 (-)
AMCG00017101 rrp9 coding upstream 207232 44892111 ~ 44901396 (-)
AMCG00017100 oxtr coding upstream 282394 44967273 ~ 44977924 (-)
AMCG00017106 NA coding upstream 375095 45059974 ~ 45068123 (-)
AMCG00017107 LOC106582845,LOC106565727 coding upstream 560182 45245061 ~ 45257864 (-)
G18164 NA non-coding downstream 274424 44387443 ~ 44387995 (-)
G18156 NA non-coding downstream 285198 44376997 ~ 44377221 (-)
G18101 NA non-coding downstream 523877 44136188 ~ 44138542 (-)
G18066 NA non-coding downstream 770512 43837177 ~ 43891907 (-)
G18015 NA non-coding downstream 1028997 43633221 ~ 43633422 (-)
G18219 NA non-coding upstream 114575 44799454 ~ 44829026 (-)
G18352 NA non-coding upstream 1168183 45853062 ~ 45916620 (-)
G18364 NA non-coding upstream 1417081 46101960 ~ 46102188 (-)
G18366 NA non-coding upstream 1417383 46102262 ~ 46106593 (-)
G18405 NA non-coding upstream 1755190 46440069 ~ 46454396 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 5514 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 1002817 43633770 ~ 43659602 (-)
AMCG00017060 NA other downstream 1353793 43305697 ~ 43308626 (-)
AMCG00017061 NA other downstream 1375816 43280237 ~ 43286603 (-)
AMCG00017051 NA other downstream 1687986 42948991 ~ 42974433 (-)
AMCG00017105 srgap3 other upstream 433411 45118290 ~ 45161137 (-)
AMCG00017158 NA other upstream 3804248 48489127 ~ 48494407 (-)
AMCG00017178 NA other upstream 4802318 49487197 ~ 49494144 (-)
AMCG00017232 NA other upstream 6499352 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 6745808 51430687 ~ 51435239 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1471723 LOC100380707 unknown NC_048581.1 CM023235.2 60972478 ~ 60999063 (+)