AMCG00017097 (grm2,LOC105017167,LOC106565576,LOC106583186)


Basic Information

Item Value
gene id AMCG00017097
gene name grm2,LOC105017167,LOC106565576,LOC106583186
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44881865 ~ 44891870 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017097
ATGCTGAGTATTCAACCTTTCTTGAAAACATCCCCCCCTTCTCTTCCCCACCAGGTGGCCAACCTACTGAGGCTCTTCCAGATCCCCCAGATCAGCTATGCTTCCACCAGTGCCAAGCTCAGTGACAAGACTCGCTATGATTATTTTGCCCGCACCGTGCCCCCTGACTTCTACCAGGCCAAGGCCATGGCGGAGATCCTGCGCTTCTTCAACTGGACCTATGTGTCCACAGTGGCCTCAGAGGGGGACTATGGAGAGACCGGCATTGAGGCTTTCCAGCAGGAAGCCCGGGCCCGGCAGATCTGCATAGCCACCTCTGCCAAGGTGGGCCGCTCCATGAACCGCCGGAGCTATGAAGTGGTCATCAGGTCCCTGCAGCAGAAGTCCAATGCCAAAGTGGTCATCCTTTTTACACGCAGTGAAGATGCCAGGGAACTGCTGGTGGCCGCCACCCGCATGAACGTGTCTTTCATATGGGTGGCCAGCGATGGATGGGGGGCACAGGAGAGTGTGGTCAGGGGCAGTGAGCTGGTGGCCGATGGCGCCTTCACCATTGAACTGGCCTCCTATCCCATCCGAGAGTTTGCAGAATATTTCACCAAGCTGGACCCCTACACCAACACACGCAACCCATGGTTCAGAGAGTTTTGGGAGCATCGCTTTCAGTGCAGCCTCCACGACCTGAGCTGCGGCCAGCGCTCCCTCAAAGATGGCAAGTTTGAGCAGGAGTCCAAGATCATGTTTGTGGTCAACGCTGTCTATGCCATGGCCCATGCCTTGCACAACATGAGACAAGCCGTGTGCCCAAACTCCACCAAGATCTGTGATGCTATGAAGCCAGGCAATGGAAAGAGGTTTTACAGGGAGTACATCCTGAAAACCAAGTTTGATGCTCCATTCCGGCCTGCAGATACTGAAAACATTGTCCGCTTTGATGCGTATGGAGATAGTATTGGCCGCTACAATATCTTCTATTATCATAAAGTGAATGGCAAGTATATCTACAGGAAAGTTGGCTACTGGGCTCAAGGACTGATCTTGAACACCAGCCTCATTCCTTGGTCCAAACATGTAGTTCCCACATCCCAGTGCAGTGACCCTTGCAAGAAAAATGAAGTGAAAAGCATGCAACCAGGAGACGTGTGCTGTTGGATCTGCATCCCCTGCCAGCCCTATCAGTACCTGCTGGATGAATTCACATGCATGGACTGTAGCTTTGGGCGCTGGCCACTGGAGAATCTCACTGGCTGTTACAATCTGCCGGAAGAATACATCCACTGGGAAGACGCATGGGCTATCGGCCCGGTCACGATCTCCTGCCTTGGCTTCATTTGCACCCTCTTTGTGATTGGAGTTTTCATGAAGAACAATGACACCCCTATTGTGAAGGCCTCTGGAAGGGAACTGTCCTATATACTGCTGCTCGGGGTCCTGATGTGTTACAGTATGACTTTCATCTACATAGCGAAGCCATCAGCTGTCATCTGTACGCTCCGTCGCCTAGGCTTGGGGACCTCCTTTGCCGTGTGTTACTCGGCCCTCTTGACCAAAACCAACCGCATTGCACGCATCTTCAATGGCGTCAAAGACGGTGCTCAGAGGCCCCGTTTCATCAGCCCAACCTCCCAGGTGGTCATCTGCATGGCGCTCATCTCCTGCCAGCTCATCGTGGTCATCGTCTGGCTCCTGGTGGAGACGCCTGGAGTTCGCAAAGAAGTGAGCCCGGAGAAGCGGGACGTGGTGACCCTGAAGTGCAACAGCAAGGACTCAAGCATGCTCATGTCCCTGACCTACAACTGTATCCTCATCATTCTGTGCACCGTCTACGCCTTCAAGACCAGGAAGTGCCCAGAGAACTTCAACGAGGCAAAATTCATTGGTTTCACCATGTACACAACATGCATCATCTGGCTGGCTTTCCAGCCCATATTCTATGTCACTGCAAGCGACTACAGGGTCCAGACCACCACCATGTGCATCTCGGTCAGCCTGAGTGGATCGGTGGTCTTGGGTTGCCTCTTTGCTCCGAAAACACACATCATCCTGTTTCAGCCCCAGAAGAATGTGACAAGTCACCGAGTGGCCACCAACCGGTTCAGTACAACTGGCCCAGGCTCTAGCTACTCACATGCTTCAGCCTCCAACTATGTGCCAACAGTCTGCAATGGTAGAGAGGTGGTAGATTCTACTACCTCCTCCTTGTGA

Function

symbol description
grm2 Predicted to enable group II metabotropic glutamate receptor activity and scaffold protein binding activity. Predicted to be involved in G protein-coupled glutamate receptor signaling pathway and regulation of glutamatergic synaptic transmission. Predicted to act upstream of or within several processes, including chemical synaptic transmission; glutamate homeostasis; and regulation of protein kinase B signaling. Predicted to be located in neuron projection. Predicted to be part of astrocyte projection and axon. Predicted to be integral component of postsynaptic membrane.

NR:

description
PREDICTED: metabotropic glutamate receptor 2

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04606 GRM3; metabotropic glutamate receptor 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017097 True 2205 mRNA 0.53 4 44881865 44891870

Neighbor

gene id symbol gene type direction distance location
AMCG00017102 grm2,LOC106565576 coding upstream 5325 44867914 ~ 44876540 (+)
AMCG00017096 NA coding upstream 142064 44715391 ~ 44739801 (+)
AMCG00017090 LOC103399082 coding upstream 167765 44692983 ~ 44714100 (+)
AMCG00017088 LOC100694221,LOC104965620,LOC102796420,LOC101486183,LOC103385919 coding upstream 222951 44656787 ~ 44658914 (+)
AMCG00017084 NA coding upstream 404075 44468119 ~ 44477790 (+)
AMCG00017098 NA coding downstream 10596 44902466 ~ 44923634 (+)
AMCG00017103 NA coding downstream 41186 44933056 ~ 44934249 (+)
AMCG00017104 NA coding downstream 328244 45220114 ~ 45227676 (+)
AMCG00017113 NA coding downstream 1051180 45943050 ~ 46096926 (+)
AMCG00017112 pdzrn3,LOC107584480,LOC107667029,LOC107680714,LOC106582849 coding downstream 1337179 46229049 ~ 46245266 (+)
G18186 NA non-coding upstream 167701 44623367 ~ 44714164 (+)
G18197 NA non-coding upstream 209995 44671292 ~ 44671870 (+)
G18196 usp4 non-coding upstream 210987 44669423 ~ 44670878 (+)
G18127 NA non-coding upstream 493916 44387443 ~ 44387949 (+)
G18125 NA non-coding upstream 504637 44376993 ~ 44377228 (+)
G18255 NA non-coding downstream 93926 44985796 ~ 44986081 (+)
G18302 NA non-coding downstream 351614 45243484 ~ 45243983 (+)
G18316 NA non-coding downstream 634874 45526744 ~ 45527005 (+)
G18330 NA non-coding downstream 890327 45782197 ~ 45782467 (+)
G18357 NA non-coding downstream 1127471 46019341 ~ 46021345 (+)
G18192 NA other upstream 225767 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 743934 44126214 ~ 44137931 (+)
G17697 NA other upstream 2484078 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 5627375 39239073 ~ 39254490 (+)
G17193 NA other upstream 6378233 38496051 ~ 38503632 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 57164 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 4480152 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 4510661 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 4821597 49713467 ~ 49727567 (+)
G19113 NA other downstream 5660010 50551880 ~ 50552985 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003595 grm2b coding NC_007122.7 CM002895.2 36158134 ~ 36216651 (+)
grasscarp (Ctenopharyngodon idella) CI01000340_10504461_10536413 GRM2A, GRM2 coding CI01000340 null 10504353 ~ 10537693 (-)