AMCG00017098


Basic Information

Item Value
gene id AMCG00017098
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44902466 ~ 44923634 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017098
tttcaatatttttaaacactgaagTCATGCTCTCGGTTTCGATCACTAATAGAGCAGTAAATCCACTGAAACAGGCAGTAAGTGAAAGGCGTAGTCCTGTCGGATGACGCGTGTAGGGCCAGTGTTCAGCCCGAGCGGGTCTGCTGCATTCCCCTGTCATACCTTGGGGCTTCCGCTGTGCAAACACACAGCACCGCCCTGTCTGCTGTCATCCGCTGTGCTGTCTGCATTGCATGAAACAGTAATTGCAATCTTGAAAAAAAATGCCACCTAAAAGAAGGGCAACTTCAGCTACCAAAGCAGGTGGTAAGAAGATCAAAGAGGAACCTGAAGCACCGGAGGATTCTTTCAAATCTGCCAAAGAGGCCCTGAAAGCAGCTCCAAAGGAGAAGTGCAAGAGTAAAGTGGATGAACATTGCAACGTATTCTGTGCTGAGaatgagTTTGACTATGAGGATGAAAATGGGCTTCTCACTTGCCCTGGAATTAGAACGGACACCTTAAGCCTCTTAATGAAAATTCAAAAGCTAGAATCAGAGCTAAAATATGAACGACGATGTAGAATCATAGCCGAAAAGGAGCTGAGACAATGTAAAGAAATGAACAACCTGCTGGCACAAATGAGGGGAACTGCTAATGAGTTGAAGTCTGTTTTGAACTGTGTCAAACTTGGGGTGGAAGATTCCCAAAACAGACACGAGAGTTCTCCCTCTGCAATAAACCAGGTCTCTGAGGATGTGACTGAGAACAATTCACAGgaTGATATATTTCTTGAACTACCCGGAGGTCTGAAAGTGCAGAAGAATTTGTACAACCGAATTTCAACCACAGACTTTAAAAAGTATACTTCAGAACTGCTGGTGCTGGTCTTCAATAGAGAAACTCTGGCTACCCATTCCCTCCAAGGCAGAAAATCATCTAATTCGAAAGAGGATTTCCAAAAGCCACCACTTCCTTCTGAAGAACTGGCCAATATAATtgATCTATGAGGATTATGACTGCATGCTGAACCAGACCAACATTGGCCATAACAATAACAAGTTCTATATTATTCAAGTTATAAAGTCAGGGAAACAGTACTATTGCTGGAACAGATGGGGGCGAGTGGGGGAAGTGGGCCAGTCAAAACTCTCAGCACCTTACAGTGACTCTGACAAAGCAAAGACTGACTTTGAGAAGAAGTTCAAAGACAAGACAAAGAATGACTGGAAGAATAGAGAGAATTTCGTCTCGCACCCAGGGAAATACACCCTGATTGAAGTGGACGGAGATGAAGACGTAGAAGTCAAGGTGGATACCGTTGACAGTGCGCCAAAAAGGGTTCTTCCCTGTACGCTGAACAACCACACCAAGGAGCTCATAGAGTTGATCTTCAGCAATGATATGTTTAAAGAGGCCATGGAGGGCATGAATCTGGACATTAAGAAGATGCCCCTGGGAAAGCTTAGTAAGGCACAAATCGCCAAGGGGTTTGAGGTCCTGGAGGAATTCGAGGATGccctgaagaagaagaagaagaacaaaggCTTTTTGGAGCAGCTCTCCTCTAAATTCTACACCATCATCCCGCACAACTTTGGACGGAACAGGCCTCCAGTCATGGCTGATATGGAAAcaatagagaagaaaaaagagatGCTTCTGGTCTTGGCTGATATTGAGCTTGCCCAGAGTCTCAAAGCCGAAACGGAAAAGTCCAAGGAGGAGATGATTGAAGCGGTACCTCACCCAGCTGACCAAGATTACCTGTCATTGAAGTGTGGTCTTACTCTGATGGGTAAAGATTCCAAAGAGTACAAGATAATACAGCAGTACCTTCAAGCAACAGCAGGAGGCTGGCGAAAACCGACCATTCGTAATGTCTGGGTAGTAAATAGGGACAAGGAgGCAGAGCGCTTTGAAGAGCATGACCACCTGGAGAACCGGCGTCTGTTGTGGCATGGCACTAACATCGCTGTCGTGGCAGCCATCCTGAAAAGCGGACTGAGGATAATGCCACACTCTGGGGGGCGTGTAGGAAGGGGAATTTACTTTGCTTCAGAGAATGCAAAGTCGGCTAGTTATGTTGGCACTACTTCCCAATCGATTGGAATCATGTTTCTCAACGAGGTGTCGCTTGGCAAGGAGCACACCATCACTGTCGATGACTCTAGCTTGAAGGCTCCTCCTGTGGGGTACGACAGTGTTGTGGCACATGGCCGCACAGAGCCAGatcCCTCTAAGGATACCTTCATCATGCTTGATGGCAAGAAGGTGATTGTTCCTCAGGGAAAGGCAATTCCCCAATCCCAGTATCAAGACAGCAGTTTTGGGGAGAGTGAGTACCTCATCTACAAGGAGAGCCAGTGCCGGATCCGATACCTTCTGGAAatgagttttaaataaatagagcTTTATAAAAACTAACAGTtggtaaaggaaaaaataaggaTCTTTGTTGCtaggtgtttctttttttttttttttagaaaaatatatagatttacaaTCTATGACAAGATTCAATGCTAAAACATGCCTACACACCATAAAAATAAGGGGGAAGAAACAATGTATCCAAAACCTGGATATTGTGTTCCATGACATCCATAAAAAGgaacattatacatttcaatcCATTCAGTCTTCTTAGAGCCTTTGAAGAGAGGAAatgcaggtttttattttcttacatacTGTACAAAAGTTCTCTATGGCCATAATTTTTCAAATTCGTGGCTAATGTTAAATGCGTTGTGTTTTTTGCCCTGTAAGTGTCAATTTAATGCACTTAAAACTGAACTGACGGATGTCCcaccttttcttttgtttgaatATTGTGCCTTAAGTGTCCATAAGAAAATGTATCCATCAGTAATATAATCAGCCTATGACTGCTTTTGATTTTTAACAGCAATTTAATAGGAATTTAGTGGTTTTATTCAATTCATATTCCAGTCGATTCTGAAATGAAACTTGAGAACAGGCTCTGTcctaataatacacatttaccACCCTCAAAAAAAAGTTTCTGCCATATTCACATATGACGTTCTACCTATTATTATATCTGACAAACTTTAGTTCATTTGCACCTTTTGTCAAAAATTCTGTCTCTGAgcaatgtcattgttttgtcaTGCACTTTATTGGGAAAAACTACCTTTTAAATATGGTTAGTTCTATCAACTTTACATGTTATATGTACATAGCTGCCTTTTAAACTAGAGCAATAGCTCATGAGCAGAATAGCTCTCCATACTTCTCAAATGTCATTTACCTTTCAGAAGAAAAGTTTGGTGTCTAGTAAAGATTATAGCTCCAACATGTaccaaatgaagaaataaaaattgttTACATAGTAGtcattacttcaattaaatgtgtgGGTAATTTGGCATGCTaggacttttctttttttacaaataaGACATTTACACCTTTACTCTTATGTTGATGctagcttttgtttttcaaaacattaatgCAATCAGAAAAGACCATCGATTCATAGTGTTGGTAGATCTacaagcaaattattacttgAACAGCTTTATTTAGAAGCAAGTGTAAAAAAGACCTTGCCTTTTTGTCAGTGTATTGGAAAATATTGCTCAGGAACAACTTGATAGTGtccttacaaaaatataaaatggtaGTAACTTGCTATTGCTAAATTCTGTGAATCCCATCATCAGCTAGTAATGTCTTCTTACTTGTGGCTGAAATGTCAAACCTCCCTAGAAGCTTGTAATACTTCTAGTGCACAATGACAtccatgttaaatatattatgacAGTGAATTTagaaattggaaaacaaatattttgtgtttatttcacatATGGAAGGAACATTCTAGATTTTACATGTAAACAAAAACTTTGTAGAACATGGCTATCTTTTTCTATGTCAGTTTGGCTTGTGTGTACTAGTATAGGGGGGTGAAAAGGATTTGATAAACTCACTGAATGTAAGATTTGACAGTTTGGAATGTTCTTATGTCCCTTCATGGAACTGGAAACAACAGTTGTGCTTTAATATTAACATGCTGTTACAGAGTTAGTCTGCATGTAAACAATTACACAAAGGAAACGAACAATAAGAAGTGGTAAACATTCTAATGAAAAGTTGACCAGGTGAGATTATTGTGGTTGTGTAAcactaaaattataaaaaaataattgtaattttgtttaaatgtttctccagaaaaaaatctaataaaatgaaactgtgcACCTTCCA

Function

GO:

id name namespace
GO:0090299 regulation of neural crest formation biological_process
GO:0006471 protein ADP-ribosylation biological_process
GO:0071696 ectodermal placode development biological_process
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG:

id description
K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017098 True 4227 mRNA 0.40 14 44902466 44923634

Neighbor

gene id symbol gene type direction distance location
AMCG00017097 grm2,LOC105017167,LOC106565576,LOC106583186 coding upstream 10596 44881865 ~ 44891870 (+)
AMCG00017102 grm2,LOC106565576 coding upstream 25926 44867914 ~ 44876540 (+)
AMCG00017096 NA coding upstream 162665 44715391 ~ 44739801 (+)
AMCG00017090 LOC103399082 coding upstream 188366 44692983 ~ 44714100 (+)
AMCG00017088 LOC100694221,LOC104965620,LOC102796420,LOC101486183,LOC103385919 coding upstream 243552 44656787 ~ 44658914 (+)
AMCG00017103 NA coding downstream 9422 44933056 ~ 44934249 (+)
AMCG00017104 NA coding downstream 296480 45220114 ~ 45227676 (+)
AMCG00017113 NA coding downstream 1019416 45943050 ~ 46096926 (+)
AMCG00017112 pdzrn3,LOC107584480,LOC107667029,LOC107680714,LOC106582849 coding downstream 1305415 46229049 ~ 46245266 (+)
AMCG00017114 pdzrn3 coding downstream 1389260 46312894 ~ 46327713 (+)
G18186 NA non-coding upstream 188302 44623367 ~ 44714164 (+)
G18197 NA non-coding upstream 230596 44671292 ~ 44671870 (+)
G18196 usp4 non-coding upstream 231588 44669423 ~ 44670878 (+)
G18127 NA non-coding upstream 514517 44387443 ~ 44387949 (+)
G18125 NA non-coding upstream 525238 44376993 ~ 44377228 (+)
G18255 NA non-coding downstream 62162 44985796 ~ 44986081 (+)
G18302 NA non-coding downstream 319850 45243484 ~ 45243983 (+)
G18316 NA non-coding downstream 603110 45526744 ~ 45527005 (+)
G18330 NA non-coding downstream 858563 45782197 ~ 45782467 (+)
G18357 NA non-coding downstream 1095707 46019341 ~ 46021345 (+)
G18192 NA other upstream 246368 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 764535 44126214 ~ 44137931 (+)
G17697 NA other upstream 2504679 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 5647976 39239073 ~ 39254490 (+)
G17193 NA other upstream 6398834 38496051 ~ 38503632 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 25400 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 4448388 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 4478897 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 4789833 49713467 ~ 49727567 (+)
G19113 NA other downstream 5628246 50551880 ~ 50552985 (+)

Expression


Co-expression Network