AMCG00017099 (cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493)


Basic Information

Item Value
gene id AMCG00017099
gene name cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44949034 ~ 44961601 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017099
TTGGCCAGGATGATCAAGGGGGACAGTACTGAAGAAACCAAGATTGATCTTGAGGAAGTAGAGGAACAATCTGAGGATAATCCCCTCCAAGCACAAATAGACACACACCCCATGGTGGAGAAGAGAGACCCCAAAGGAGTAAACTCATACctcaaggTAACCTTTGAAGATGTGATCGCAGAACCAGACTCAGTCCACAGCTTTGACAAAGTGTGGATTTGGAGCCATGCCTTGTTTGAAGTTTCCAGACTCTGGTTTTACAGGATAATGTCTCTCCTCCTTGCAGTCCCTGTGTCTTTAATCACTGGAATACTGTTTGCTATATTAAGTTGCCTTCATATTTGGTATGTTAGCCCTGAAACACTTCCTGTAATGTGCATCATGCCTTGTGTCCAAATCTGCCTTATCAATATGCACTCAATTAAAACCATCTGGGGATCAGTCTTGGACATAGCAATTTCACCTTTCTTTAAGAGTATGGGGAAATGCTGCAACGCCATCAATCTGCGTTTGGCTCTTATGAGCTCTAGGCAGGCCTGGGACGCTGCCGTGCCCAGAATTGACAGTACAGCTCTTGCTGTCCGTAGCAGCTGTCCACTGGCATTTAGGGTGCGGCGTCACTTGCAAGAGAAGATCAGAGCGGTGGATTTTGAAGATGTGATCGCAGAACCTGATGGAACACACAGTCTGGACGGTGTCTGGAAGGCTAGCTACACAACCTTCACTGTTTCTAAATATTGGTGCTACAGAGTGCTGTCGGCCATCTTCGGCATCCCAGTCTCCTTGATCTGGGGCTTCCTCTTTGCTTGCATCTCTTTCTGTCATATCTGGGCCGTGATGCCATGCATCAAGAGCTACATGATCGAAACCCAGTGCATCAGCAGGATCTACTCATTGTGCATCCATACCTTCTGTGACCCCTTCTATGAGGCACTGGGCAAGATCTTCAGCAGCATTCGCGTGGCTCTCCGCAAGGAGGTTTAAATCACAGATGTCCAGGACTGCCTTGGCACATTGGGTTTTGAATTCAGAGGTCATCACTACCCCACTTGGCACATGCCCACTCACAATGCTGGAACTATCTGTCACCGAAGGCTGTCCTTCAGGAACACTGCAGTTCACCGTTTTCAATAGAAAAACAATTTCAGTTCATTTAAACTAAAGGACACTCCACAGTGGGCATTACTAATTACCATCACCATTATTTAtgatagttatttattttttgaccaCATAACTTCCTGATTAGATCTAGTATGTGAGCTTGGTCtacagaaattgaaaataagtGTGTTAAGTATAACATTTGGCCgcttgttaattaaaacaaaattgggGGTTTCGATATATACAATTTTGAAGAAATCACATCCCATGAATCCACACTCTTCATAGTTTAATTACTAGATGCAATGTGTTTAACAAAAACGTTTTCCTATTAATCAATGGTTTTCCACCAAAGTTGAATTTGTCAACTTATATCTCATAAAACAACCCACAGTAGTAACAGTGtataaaatattatgaaaatattgatgAAAATTCCAATTTATCATTTTAACACTGTATTCTATGTATCTCAGTTTTCATCTGTTCAATAGGAAAACTCttctgtatgtaaaataaatcatctgttattaaataaatatttatagttaGCAACtactaaaaaatatttatttatcttgtgtGAATGCTGTCTGTATTTGGATGTttgttacataagaacataagaaagtttacaaacgagaggaggccattcgacccatcgtgctcgtttagtgtccattaataactgagtgatccaaggatcctatccagtctatttttaaatgttcccaaattgtctcttcaaccacatcgctggggagtttcaTCCAGAtcgtgacaactctctgtgtgaagaagtgtctcctacagcttccaatttgaggatcagtctttggtgtggaaccttatcaaaagttttttgaaaatgaaaatgtaagtatatcatatcatatgctttcacatgatctacggctgtagttgcatgttcaaaaacctccaataaattagtaa
>TU22623
AGGCAACCTCACACAAAATGTGTTACTCGTTTTTGTACATTGGGCTTTCCACAGCTGGTTTCAAAACTTGTGGCTTCAGGTTTtagtttgttcattttataGTTGGCCAGGATGATCAAGGGGGACAGTACTGAAGAAACCAAGATTGATCTTGAGGAAGTAGAGGAACAATCTGAGGATAATCCCCTCCAAGCACAAATAGACACACACCCCATGGTGGAGAAGAGAGACCCCAAAGGAGTAAACTCATACctcaagGTGCATCATGCCTTGTGTCCAAATCTGCCTTATCAATATGCACTCAATTAAAACCATCTGGGGATCAGTCTTGGACATAGCAATTTCACCTTTCTTTAAGAGTATGGGGAAATGCTGCAACGCCATCAATCTGCGTTTGGCTCGTGACTGAAAACTGAGTTCCAGTGTCTCGACTGATATCAAGTAATGGATGACCACGGATCAGTCATGGATGCTACCTACAGTCATAAAATGCATTCCACAAGGAATCAGCCCATCATTGTAGTTGTACACAAACTTTACGGTTCCCCCACTGTGTAACAtgatgtggaaaaaaatgtattgaaagaggAGGAACGAAAAACGATTTCAGTATGTTTAGAACTTCTGAACAGAGTATATACATGTTTCCCAGAAAAGGCTGTACAGACAAAGCTACCTAAACAAGATAGTCAacacttttcttctgttttaaaaacaattgaattTTTTAACGCAATGCACCTGGACTGTATTAGAGACACTCCTCCTTAAAATATAAGTGTTATTATTTCCACAAACAATGTGTTCACCTGGCCTGACAAGAAATCTTTATCTTTGAAGTGGTCTCTAATTGAGAGGGTCATGAATATTCATAAGCACAGAGGCCTATTTGTTTGTGATAGATGGGTGACAGATTGGTGGCAActcaaaacataatataatgtgtggatgatgatgatgatgatgattattattgtcatttataaTTAATGGGTAATATCAACAATACCAATGTCTTGGTGTtcaatactttttgttttgtttatggaGTAAAATTTACAGAATATCTTCCAGTGGAAAACATAAAAGAATTGTATTGTGTTGCCATAATTAAATACTGAGCATCTTTGTGGCATTAGTATTATGCTTCCTACTACTacttccaattaaaataatacaaaataattatacaaatccACACACTAGCTATTCTTTTTTGAATTGCCGCCAATCTGTCGCTTGTGTTTTGTGAACCAACCAGCCTCTGAGATCGAAGACCTTTGCTTCAGTGTTCTTGTGTGTTCATAAATATTCATTAAGCTGAAAGACAGCACTTCGGCAATAAAGTGTTCCTGTCAGGCCAGATGAAAACAttgttgaaataataacatgtatattttaaggAGGGTTGTctctaatacaatccaggtTCACAGAATGaggcaggttttccattatatagatAGGAAGTAAAGCACCACCGGAACTCCTAGcgatcccacaatgcactgtttTGCGTAAGACGGAAGTTCCCAGTTGGATCGGTGGAGTTGACTATCTTGTTTAGATATCAAATGTCTTTTACACAGTTGGGGAACTTGCTGACATGTAAGGAAGCTCCTCCCttaaaaacatctttattttccttttcaacagAAATCAGACTAATTAAACAACTCATCTCAAACATCAAATATGTGCTCTATTAGCCAAAGTATTGgtacagaatatttaaaaagatgtatatTTACAGGCTACCCTTTGGGTAGCTGGATGAGTACCATGTTATTTCTCCCAGTTTGAATGTTCCCCATTCACTGGATCAGGTCATCCCAGGGCTGTACTTTGAGACTGAAGCCAAGCCTGAAATGTCTTCCGTATTTTTCTCCCTGAACCACTATGCAGCACTCTCAGATTTTTGACCTGGTGTGTTACTTGTTTGCAGAAATAACAACCTTCACTATGAAATTCCACCAATTCTGGCACTACAAAATTGTGCACAATGTCCCAATTGTGTTTATCCCGATTACTGATGCTCATGCCTTACACAACAAGTAATCTTTACAAAGCACATGGTCCATTATAATCCATTGCTGGCAGAGGGAGGTCTAATTAATTACTTGTTGTTCTTTATACAAATAGTAACTTGTTAAAGACAGCATTTGGACTCCACcaaagaaaagtatttgttaTGGTTAGAGAGAAGTTTtatcttttaaagttaattaatttgcttGCTGCCATAAtggtatacatttataaaataaatggtttcaCCCTTGTTCATCTATATAATGCCATTGCCATCCtgtcattattaattttttgtcaccattaattttgatttgacatcccagttatttttttttatcaaatgtgttaattttttaaataatgtttatcattgggaattatacatttttttgaagTTTACATTAAAGGAATACATGTATGTACCCTGTAAAATTCTTCAAGACAATTTACTTAAGAATGATTATcggttttaaaatcaaatatttccAATAATTAATCCAATAAATTACTTAttcttaataaatatt

Function

symbol description
cav3 Predicted to enable connexin binding activity; molecular adaptor activity; and transmembrane transporter binding activity. Acts upstream of or within muscle cell fate commitment; notochord cell development; and striated muscle cell differentiation. Located in sarcolemma. Is expressed in several structures, including adaxial cell; heart; musculature system; notochord; and pectoral fin. Used to study muscular dystrophy. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple); isolated elevated serum creatine phosphokinase levels; and muscle tissue disease (multiple). Orthologous to human CAV3 (caveolin 3).

GO:

id name namespace
GO:0042693 muscle cell fate commitment biological_process
GO:0007520 myoblast fusion biological_process
GO:0045214 sarcomere organization biological_process
GO:0060035 notochord cell development biological_process
GO:0042383 sarcolemma cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005901 caveola cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017099 False 2061 mRNA 0.41 5 44949136 44961601
TU22623 True 2561 lncRNA 0.36 2 44949034 44952964

Neighbor

gene id symbol gene type direction distance location
AMCG00017103 NA coding upstream 14785 44933056 ~ 44934249 (+)
AMCG00017098 NA coding upstream 25400 44902466 ~ 44923634 (+)
AMCG00017097 grm2,LOC105017167,LOC106565576,LOC106583186 coding upstream 57164 44881865 ~ 44891870 (+)
AMCG00017102 grm2,LOC106565576 coding upstream 72494 44867914 ~ 44876540 (+)
AMCG00017096 NA coding upstream 209233 44715391 ~ 44739801 (+)
AMCG00017104 NA coding downstream 258513 45220114 ~ 45227676 (+)
AMCG00017113 NA coding downstream 981449 45943050 ~ 46096926 (+)
AMCG00017112 pdzrn3,LOC107584480,LOC107667029,LOC107680714,LOC106582849 coding downstream 1267448 46229049 ~ 46245266 (+)
AMCG00017114 pdzrn3 coding downstream 1351293 46312894 ~ 46327713 (+)
AMCG00017121 NA coding downstream 1451801 46413402 ~ 46415356 (+)
G18186 NA non-coding upstream 234870 44623367 ~ 44714164 (+)
G18197 NA non-coding upstream 277164 44671292 ~ 44671870 (+)
G18196 usp4 non-coding upstream 278156 44669423 ~ 44670878 (+)
G18127 NA non-coding upstream 561085 44387443 ~ 44387949 (+)
G18125 NA non-coding upstream 571806 44376993 ~ 44377228 (+)
G18255 NA non-coding downstream 24195 44985796 ~ 44986081 (+)
G18302 NA non-coding downstream 281883 45243484 ~ 45243983 (+)
G18316 NA non-coding downstream 565143 45526744 ~ 45527005 (+)
G18330 NA non-coding downstream 820596 45782197 ~ 45782467 (+)
G18357 NA non-coding downstream 1057740 46019341 ~ 46021345 (+)
G18192 NA other upstream 292936 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 811103 44126214 ~ 44137931 (+)
G17697 NA other upstream 2551247 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 5694544 39239073 ~ 39254490 (+)
G17193 NA other upstream 6445402 38496051 ~ 38503632 (+)
AMCG00017167 NA other downstream 4410421 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 4440930 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 4751866 49713467 ~ 49727567 (+)
G19113 NA other downstream 5590279 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 5597849 50559450 ~ 50563278 (+)

Expression


Co-expression Network