AMCG00017100 (oxtr)


Basic Information

Item Value
gene id AMCG00017100
gene name oxtr
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44967273 ~ 44977924 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017100
ATGGAGGATGTGCCCTTGAATGAGCTGTGGTCTCTGAACGCGTCCGTGGAGAACTCCAGCCTGGCCGGCGCGCCCGCAGGGGGGAACGGCTCCGTGGGTCCCGTACGGCGCAATGAGGAGGTGGCCAAGGTGGAGGTGACCGTGCTGGCCCTGATCCTGTTATTGGCACTGGCGGGCAACCTGTGTGTCCTCCTAGCTATCTACACGACGAAAAACAACCAGTCTCGGATGTACTTTTTCATGAAACACCTCAGCATCGCAGACCTGGTTGTGGCTATCTTTCAAGTCTTGCCGCAACTGATCTGGGACATCACATTTCGGTTTTACGGACCCGACTCTCTTTGCAGATTGGTAAAGTATCTGCAAGTGGTGGGCATGTTTGCATCGACATATATGCTGGTTTTGATGTCCATAGACAGATGTTTGGCCATATGCCAACCTCTGCGCTCTTTACACAGGAGAGCCGACCGTCTGTACGTCATTTCTTCCTGGGTCCTCAGCCTTTTGTTCAGCATTCCTCAGGTGTATATATTCTCTCTGAAAGAGGTGCCAGTCGGCTCCGGGGTGTATGATTGCTGGGGAGATTTCATCCAGCCCTGGGGAATGAAGGCGTATGTAACCTGGATCAGCCTCACCATCTATATCATTCCAGTGGCCATACTGAGCATCTGTTACGGACTGATCAGCTTTAAAATATGGCAAAAcgttaaactgaaaacaaggaAGGACTACGGTGTCACAGCGGCACAGAAATCCTCAGAGGGGTTAGTGCTCTCCCGGGTGAGCAGCGTCAAGCTCATCTCAAAAGCCAAGATCAGAACCGTGAAAATGACTTTCGTCATCGTCCTGGCTTACATCGTTTGCTGGACGCCTTTCTTCTTCGTGCAGATGTGGTCAGCGTGGGACCCAGCAGCCCCCAGAGAAGCATTAGCGTTCATCATTTCTATGTTGCTGGCCAGCTTGAACAGTTGTTGTAACCCCTGGATTTACATGTTCTTTGCTGGGCACCTTTTCCACGACATGATGCATCGCTTCCTCTGCTGCTCCACACACTATCTGAAATCCTCCCAGTGCAACTGTGAGCGCAACTCCAGCCGCAAGAGCAACTCGTCCACCTACATCATCAAAAGCACGAGCAGCCAGAAGAGCATCACACAGACATCCACGACATGA

Function

symbol description
oxtr Enables peptide hormone binding activity. Acts upstream of or within neurohypophysis morphogenesis and positive regulation of angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Orthologous to human OXTR (oxytocin receptor).

NR:

description
PREDICTED: oxytocin receptor

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004990 oxytocin receptor activity molecular_function
GO:0005000 vasopressin receptor activity molecular_function

KEGG:

id description
K04229 OXTR; oxytocin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017100 True 1173 mRNA 0.52 2 44967273 44977924

Neighbor

gene id symbol gene type direction distance location
AMCG00017101 rrp9 coding downstream 65877 44892111 ~ 44901396 (-)
AMCG00017092 emc3,LOC101173295,LOC106583189,LOC101079695 coding downstream 275324 44685616 ~ 44691949 (-)
AMCG00017093 NA coding downstream 282394 44662419 ~ 44684879 (-)
AMCG00017095 NA coding downstream 315424 44640087 ~ 44651849 (-)
AMCG00017094 NA coding downstream 332568 44633572 ~ 44634705 (-)
AMCG00017106 NA coding upstream 82050 45059974 ~ 45068123 (-)
AMCG00017107 LOC106582845,LOC106565727 coding upstream 267137 45245061 ~ 45257864 (-)
AMCG00017108 NA coding upstream 315735 45293659 ~ 45305316 (-)
AMCG00017109 NA coding upstream 645202 45623126 ~ 45647218 (-)
AMCG00017110 NA coding upstream 684710 45662634 ~ 45665661 (-)
G18219 NA non-coding downstream 138247 44799454 ~ 44829026 (-)
G18164 NA non-coding downstream 579278 44387443 ~ 44387995 (-)
G18156 NA non-coding downstream 590052 44376997 ~ 44377221 (-)
G18101 NA non-coding downstream 828731 44136188 ~ 44138542 (-)
G18066 NA non-coding downstream 1075366 43837177 ~ 43891907 (-)
G18352 NA non-coding upstream 875138 45853062 ~ 45916620 (-)
G18364 NA non-coding upstream 1124036 46101960 ~ 46102188 (-)
G18366 NA non-coding upstream 1124338 46102262 ~ 46106593 (-)
G18405 NA non-coding upstream 1462145 46440069 ~ 46454396 (-)
G18419 NA non-coding upstream 1585170 46563094 ~ 46563573 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 310368 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 1307671 43633770 ~ 43659602 (-)
AMCG00017060 NA other downstream 1658647 43305697 ~ 43308626 (-)
AMCG00017061 NA other downstream 1680670 43280237 ~ 43286603 (-)
AMCG00017051 NA other downstream 1992840 42948991 ~ 42974433 (-)
AMCG00017105 srgap3 other upstream 140366 45118290 ~ 45161137 (-)
AMCG00017158 NA other upstream 3511203 48489127 ~ 48494407 (-)
AMCG00017178 NA other upstream 4509273 49487197 ~ 49494144 (-)
AMCG00017232 NA other upstream 6206307 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 6452763 51430687 ~ 51435239 (-)

Expression


Co-expression Network