AMCG00017101 (rrp9)


Basic Information

Item Value
gene id AMCG00017101
gene name rrp9
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44892111 ~ 44901396 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017101
ATGCAGGTGTTCCGGTGTTGCGTGCTCCATACCTCGCCGGCATTAGACCCAATTGAAGTGGCTGATGCAGATGGAGGGAATAAAGGCCGGGCTAAAAAAGGCAGTTCCAGACTGAATGAAGAAATCTCCAGCGATTCCGAGACTGAAGTtccTGTTGTCAGTAGGAAAAGGCGACaaaaggaggaagaagaggtGGATGAGACCGCACAGGAGAAGAAGCTCAGATTAGCCAAACTGTACCTTGAGCAGCTGAGAGTGGAAGaggAAGATAAAGCAGAAGAGGaagcatttgaaaaagaaataattGCTGGAAGACTTCAGGAAGATGTACTTGAACAGAGAGGAAAACTTCAACGATTTATTGCAAAGGACCTTCAGCCTCCTGATCTAGCTGATGTGCGTTTGTTGAGGGGACACCAACTTCCAGTCACCTGCCTAGTTATTTCTCCTGATGACAAGCATATTTTCTCCGGAGCCAAAGATTGctcaattattaaatGGGATGTAGAGAGTGGAAAGAAGCTTTTCACCATTCCCGGAGGAAGGAAGGGAACCGAAGACCGCCATGTTGGACACACTGCACATATTCTATGTATGGCAATATCATCTGATGGCAAATACCTGGCTACTGGTGACAAGAATAAGTTAATTATGATTTGGGAAGCAGCAACGTGTAAACATCTGTACAAGTTTACAGGACACAAGGACGCAGTGTCGGGCCTGTCATTTCGAAAAGGCACACATGACTTGTACAGCGCTTCTCATGACCGGGCTGTGAAGGTGTGGAACGTAGATGAGAATGCCTATGTGGAAACGCTGTTCGGACACCAGGATGTGATCACAGGCCTGGATTGCCTGAGCCGGGAACGCTGTGTGACGGCAGGGGGGCGTGACGGGACGGTCAGGGTGTGGAAAATCACGGAGGAGTCACAGCTCATCTTTCACGGCCACGAaggCTCTATTGACtgtattcaattaataaatgaagaGCATATGATCACAGGAGCGGATGATGGGTCTGTTGCTGTGTGGAGTGTGGGCAGGAAGAAGCCTCTGGCCACCGTTAAGCAGGCCCATGGTTGTCAAGGGGATGGTGGCCTGCAGCAGCCGCACTGGATCTCCGCGGTGGCGGCTCTGCTCAACAGTGACACTGTTGCTTCAGGTTCCCATAATTCCAAGGTGCAGCTGTGGAGATGTGCCGAAGGATTCCGCAGTTTACAGCCGCTGTTCGAAGTCCCCGTGGCAGGTTTTGTGAACAGTCTGAAATTTTCAAACTCTGGAAATTTCCTTGTTGCTGGAGTCGGACAAGAGCACAGGCTAGGCCGGTGGTGGCGAATTAAGGAAGCGAAGAATGGACTTTATATCATTCCCCTGAAGAAAAAGACTTTGGAACAAGACTCTGCAAATGGCATATAACCAACTTGGATAAAACACCTCTGTGCAATAAAGGACTTTGCTTTATCCACCTCGTGGAAATAGTGTTATAAAATCTTAGATGGTACAGTCTTCTAAAAGACCAAACTGTGGCCTCTGGGACAATTAACTTCTTATACCCTTTACAATCaaagttttatttgaaaagcgttctgcttgttttgttttgatatcgGACGCAACCTTGTGTCTTGACTTCAGTCTGTGAACTGCCTATGGAAAGGTCTGCTATGCAGCTGTGCAGCAATTTGTGCAACACATTTTCTGATGTTTCTAAACAAAATATGATGTACTTTTAACaccttgtattattaataaggCGATGTCTGACAGCATATACATTGCGTGCCAAACAACTTGCCCTTTGAAAGATTTGAAGAAAAGTCCTGGTTAGAGTTTGGTGTTTCACAGTGTGGCTAGTCTTGTAATCCCTTAATATCTGCTCTGTCCTCTTTGAAGCAGTGAGGGGTTTTACTAAATAATAGGCCGACATGTTGTGCAAAACAGAGCTCTTCAGATCTTTTATAAGGAAGGGGTTCCTCAATCAACCTAAGTTTTAATGCAGGGGTTCCCAAATTTACTGGTGTAACTTGCCATCCAATTTTGTATCTGACTTAAGCTGTACATgagtaagattaaaaaaaaatcaaataccctattttatttattttcacatttatggGATAAAATACCTTTTCACACTTTACCAACTGAGTGGTACCCCCCTCTcccaattaataatttatactgTCATCTTATTAACTTTGAAAATCTATAATTGtgatatgaaaatgtatgttagcAAAGCTCATTGTCCTTTTATCaatgaacatttcaatacatctgCCACCACAACAACTTTTCATTCCATGAGttgttactgtatatattaaaaaataccagCAGCTACAAACCAAGAAACctacccctactgtttaaaataataattaaaaaaaacaaggaatgcaaggttttaatattaataaaaaacaccttttatttacataaattacaagAAAGCACAAACTGGTTCacaaaaatctacattaaaaacattttttacacatttaacagATT

Function

symbol description
rrp9 Predicted to enable snoRNA binding activity. Predicted to act upstream of or within rRNA processing. Predicted to be part of small-subunit processome. Orthologous to human RRP9 (ribosomal RNA processing 9, U3 small nucleolar RNA binding protein).

NR:

description
PREDICTED: U3 small nucleolar RNA-interacting protein 2

GO: NA

KEGG:

id description
K14793 RRP9; ribosomal RNA-processing protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017101 True 2511 mRNA 0.42 15 44892111 44901396

Neighbor

gene id symbol gene type direction distance location
AMCG00017092 emc3,LOC101173295,LOC106583189,LOC101079695 coding downstream 200162 44685616 ~ 44691949 (-)
AMCG00017093 NA coding downstream 207232 44662419 ~ 44684879 (-)
AMCG00017095 NA coding downstream 240262 44640087 ~ 44651849 (-)
AMCG00017094 NA coding downstream 257406 44633572 ~ 44634705 (-)
AMCG00017089 NA coding downstream 291831 44573524 ~ 44600280 (-)
AMCG00017100 oxtr coding upstream 65877 44967273 ~ 44977924 (-)
AMCG00017106 NA coding upstream 158578 45059974 ~ 45068123 (-)
AMCG00017107 LOC106582845,LOC106565727 coding upstream 343665 45245061 ~ 45257864 (-)
AMCG00017108 NA coding upstream 392263 45293659 ~ 45305316 (-)
AMCG00017109 NA coding upstream 721730 45623126 ~ 45647218 (-)
G18219 NA non-coding downstream 63085 44799454 ~ 44829026 (-)
G18164 NA non-coding downstream 504116 44387443 ~ 44387995 (-)
G18156 NA non-coding downstream 514890 44376997 ~ 44377221 (-)
G18101 NA non-coding downstream 753569 44136188 ~ 44138542 (-)
G18066 NA non-coding downstream 1000204 43837177 ~ 43891907 (-)
G18352 NA non-coding upstream 951666 45853062 ~ 45916620 (-)
G18364 NA non-coding upstream 1200564 46101960 ~ 46102188 (-)
G18366 NA non-coding upstream 1200866 46102262 ~ 46106593 (-)
G18405 NA non-coding upstream 1538673 46440069 ~ 46454396 (-)
G18419 NA non-coding upstream 1661698 46563094 ~ 46563573 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 235206 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 1232509 43633770 ~ 43659602 (-)
AMCG00017060 NA other downstream 1583485 43305697 ~ 43308626 (-)
AMCG00017061 NA other downstream 1605508 43280237 ~ 43286603 (-)
AMCG00017051 NA other downstream 1917678 42948991 ~ 42974433 (-)
AMCG00017105 srgap3 other upstream 216894 45118290 ~ 45161137 (-)
AMCG00017158 NA other upstream 3587731 48489127 ~ 48494407 (-)
AMCG00017178 NA other upstream 4585801 49487197 ~ 49494144 (-)
AMCG00017232 NA other upstream 6282835 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 6529291 51430687 ~ 51435239 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_08953503_08960561 RRP9 coding CI01000306 null 8953040 ~ 8960782 (-)