AMCG00017103


Basic Information

Item Value
gene id AMCG00017103
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44933056 ~ 44934249 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017103
ATGGAGCTAGGGGGTTTACCCAACACACAGTCCAAATTCAAAGACCTTGTTGGAATATTCTTCATGGTGTCATTGAACATCGTCGCACTCTTGGCCAACACGGCAGTAATGGTGGTCATCATCAAAGCACCACAGCTCAGGAAGTTTGCTTTCGTTTGCCACCTGTGTGTAgtagaccttttatctgctgTGTTCCTGATGCCTTTGGGTATAGTTTCCACTTCCTCCTTTTTTGGGAAGGTTGCATTCAGTGCACTAGAATGCCAGGCTTACATATTCCTCAACGTCTGCCTGATTTGTGCCTCAATTCTCACGATAACGGCCATCAGCATTGAACGGTATTACTATATAGTGCATCCAATGAGGTACGAGGTGAAAATGACACTCAGCTTAGCTGTAGCCGTGATGATTTTCATCTGGGTCAAGTCCATTTTATTGGCATTCATTCCCTTGCTGGGATGGCCCACATACGGTAACCAAAGCCCGACAAACGCAGCCCAGTGCTCCCTGTATTGGAGCCACAGTGACTATAAAAAAGCTTTTGTCATCATCTTCAGCATCCtctgttttttccttccttcaaTTATCATCTTCACAGTCTACTGCAATGTCTACAAAGTGGCACGAATTGCAGCCCTACAGCACGGACCCATCCCCACCTGGACTACTAGTCCTAAAAGGCGCTCAGACTCCATCAATAGTCAGACAACCATTATCACAACCAGGAACCTTCCTCAAAGGCTGTCCCCTGAGAGAATCTTTGGGGGAGGCAAGGCCGCCTTTACTCTGTTTACCATCGTAGGTCAGTTTCTTCTCTGCTGGCTgccttatttttctttccacctCCACTTATCAGTACATAAAGCACTCAAAAGCCCAGGGGACATTGAGATTGTGGTTACCTGGCTTGCCTACTCCTCTTTTGCCATTAACCCATTCTTCTATGGACTGCTAAATCGACAGATTAGAGAAGAATTGTGTAAACTCAGACGGTGCTACATGACAAGGCCTACAGAGCTTGGCGTGTCTAGTCACGAAGGATCCATCCAAGAGAATTTCCTCCAGTTTTTACAGAGGACCAGCTGCACGGTGGAAACGAGGTCGAGCTACATCAATTCCAGCCCCAGAAATACTCTCGACCAGACGGTGCAAGGCTTCCAAATCCCTGGACAAATCCCAGAAGAGTTCACTTAA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017103 True 1194 mRNA 0.47 1 44933056 44934249

Neighbor

gene id symbol gene type direction distance location
AMCG00017098 NA coding upstream 9422 44902466 ~ 44923634 (+)
AMCG00017097 grm2,LOC105017167,LOC106565576,LOC106583186 coding upstream 41186 44881865 ~ 44891870 (+)
AMCG00017102 grm2,LOC106565576 coding upstream 56516 44867914 ~ 44876540 (+)
AMCG00017096 NA coding upstream 193255 44715391 ~ 44739801 (+)
AMCG00017090 LOC103399082 coding upstream 218956 44692983 ~ 44714100 (+)
AMCG00017104 NA coding downstream 285865 45220114 ~ 45227676 (+)
AMCG00017113 NA coding downstream 1008801 45943050 ~ 46096926 (+)
AMCG00017112 pdzrn3,LOC107584480,LOC107667029,LOC107680714,LOC106582849 coding downstream 1294800 46229049 ~ 46245266 (+)
AMCG00017114 pdzrn3 coding downstream 1378645 46312894 ~ 46327713 (+)
AMCG00017121 NA coding downstream 1479153 46413402 ~ 46415356 (+)
G18186 NA non-coding upstream 218892 44623367 ~ 44714164 (+)
G18197 NA non-coding upstream 261186 44671292 ~ 44671870 (+)
G18196 usp4 non-coding upstream 262178 44669423 ~ 44670878 (+)
G18127 NA non-coding upstream 545107 44387443 ~ 44387949 (+)
G18125 NA non-coding upstream 555828 44376993 ~ 44377228 (+)
G18255 NA non-coding downstream 51547 44985796 ~ 44986081 (+)
G18302 NA non-coding downstream 309235 45243484 ~ 45243983 (+)
G18316 NA non-coding downstream 592495 45526744 ~ 45527005 (+)
G18330 NA non-coding downstream 847948 45782197 ~ 45782467 (+)
G18357 NA non-coding downstream 1085092 46019341 ~ 46021345 (+)
G18192 NA other upstream 276958 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 795125 44126214 ~ 44137931 (+)
G17697 NA other upstream 2535269 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 5678566 39239073 ~ 39254490 (+)
G17193 NA other upstream 6429424 38496051 ~ 38503632 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 14785 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 4437773 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 4468282 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 4779218 49713467 ~ 49727567 (+)
G19113 NA other downstream 5617631 50551880 ~ 50552985 (+)

Expression


Co-expression Network