AMCG00017104


Basic Information

Item Value
gene id AMCG00017104
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 45220114 ~ 45227676 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017104
ATGCCCGACCTGGTTGTATACAGTCCCTCGGTTACACACAGTGGCAGGATAGGAGGGATTAGTGTGAAAAGGCCATCCAGAACCACAATGTCAACCCAACAGGAAGAAGGCATTGGACACCAGTGCCAGGGGAACCCGCAGGAAGACAGTAACAACACTGCACTTCTGTCACACAACCTAGAGAAACTTACTACTGAGCAAACTACAGACCCAATTAGTGTCACTATTGGAGCAACAGTTCCCACTGGGTTTGAGCTCACTGCTGCAgaggaaataaaggaaaagatAGGTGCTGATGCAAGGATAAGCAAAGACCGTGGTAGAATATACTTCAAAATAACTCTTGAAAATCTACCTCAGCTTCATCACCTGAAGTCTGTAGACAACTTATTTGTTGTGGTTGAGGAGTTTTCGGAATATGAGTTTAAAGACACAAAGGAGGAAACGTTGGAGGACTTCCAGACGCTTGCTGCTAAGCTCCCATGGACATGTGCACTTGAGGTGTGGAAAATGAACAACTCTTTAAAGAAGAAGAGAACCCGACGAAAAATGGGCAAAGAGGCCGCATCTCCCAAAGGAGCCCCAGACACTGCAAGTGCAGAAAACTGCAATGCAGAGTCTCCGACTGCGATacacgagagagagagtttgGATCCAAAGACAGCAGAGACTGGTAATCATCAGGAGAAGTCAAAACAGGATGAGGAAGTGTCTACTGAGGTGCCTGAACTTGATAACGACTGTGAAGTTTCTGAGGAAGAAGAATCCTCTAAACTTCTGAAGTTTCGTGTGACTTGCAACAGGGCaggggaaaaacacaattttacttCAAACGATGCTGCAAGGGATTTTGGGGGAGCTGTGCAAGACTTCTTCCAGTGGAAGGCCGATATGACTAAGTTCGATATTGAGGTGCTCCTAAATATCCACAACACTGAGGTGGTTATTGGCATTGCACTGACAGAAGAGAGTCTCCACAGAAGAAATATAACTCATTTCGGCCCAACAACCCTGAGATCCACCCTTGCGTATGGAATGCTCAGGCTTTGTAAACCCCAGATGTCAGATGTTGTAATTGATCCGATGTGTGGAACTGGAGCTATACCTCTGGAGGGAGCTATTGAGTGGCCATATTCCTACTACGTGGCTGGAGACAACAATGGAATGGCTGTGAACCGGACTGTGAATAATATAAATCACATCCAtaagaaaaggcaaaacaagaaaagTACAGCTTGGGGTCTATGTATAGACACGGTCCAGTGGGACTTGTGCAATCTTCCTGTGAGGACAGGCTCTGTGGATATTATTGTGACAGACATGCCTTTTGGAAAGagAATGGGTTCTAAAAAGAAGAACTGGGATCTCTATCCCTCCTGCCTTAAAGAAATGGGTCGTGTCTGTAGGCCTGGAACAGGAAAGGCGGTGCTGTTAACCCAGGACAAGAAATGCTTTGCCAAGgcTCTGTCGAAGATGGGATACCTGTGGCGGAAGTCCCAGACAGTGTGGGTGAATGTAGGTGGGCTCCACGCGGCTGTCTATCTCCTGAAACGTACTGGGTTTTGTTTTAGCAAGATGTCAGAAGAATTTTCTGAGAATAAGGACCTGGTTGATGAAATTAGGGatgaggaaaaataataaatacattttgaaatggtaaCATTTCTCATGTCCAGGTCTGGGAGAAAAGCATGTACCATATGAAAAGTGCCTGTTCCTGACATTCACATAAAAAAGGTTGTGAAATCTCAAAAGAAATCAATTTCACATGCATTTAACAGGAAATGTGGAATTACTCAGTTAAGTGCcattacagtaaatacatgATTCTTTGAACATATGCATTCCTACAGTAtcattagatttgttttcagatgcaAACACTTCAAGAAAGAGCGGATCCTTGCACTAATACAGGATTTCAGGGCTTTTTAAGAGAAACCACAGTTACTACTGCTACTTTGGCCAGTggcattgtattttgtaaaattaatttattaaagttgTTTTGTATCATTTAATGTGTAATAAGTATTAAGAGATTTCTTGAATGTTATTTGTAAGATTTTTACATAACTCAAGCTTTGCAGTTGAGTTGTTTGGATTATTAAAACCTATATTActgatagaaaaaataaaaatgttagcTATTTAGAATAATGGGGTCCTGTTGTTCAGTATAGAATATTGAAGATGAATGCTGATGCTTTAAAGGAACTTGCTGGTTTGTGAATTACTTCAGCATTTATTACTTCATGCTTTCAAGAATGAacaaattctttaaaaataaatactgtactaGTCTATACAAATCTGCAATAGTTAACAGTACCCTGTGGTATAActaactgaaaacatttctgttcagttgaactttgttttacatttagttcatgttttacatttaattcatgtTCTCATTTTGAGAATTGAGTTTTCTCAAACTCAAAGGCCTGTGAAAGTGTGATTTGGCATTTCTTGTACTTcctatttaataaaaatgttcaggggaaaatcattttgtttttataatttgcatGTATCTGGTGTtagatatatacacagatgaacacacacacacgtgcacatatatatatatatatatatatatatgtctcaAAGCAAGCatactcatttattttgttgaatgGCTGGTATGGTATAACTCCAAAATATTCAGCATGGTTGtagttacatttattaaaaccatAAGATATGGACATGCTAATGCACCAGTCCAGATGTAGTAAATCCCTACCAACacaaaaattatttaaaaaaataaattaactatgcaCACTCAGCAATTGCTGcaagtttaaaattatttattgaattgaacaGGCGTACACAATCTGTTAACTTTTACTCCTGATTGTTCAACAGGTGGGTGACTTAATTATGCAGTTTTCCTACATGATTTCAAATGCTTCCACACCTGTAGAAAAAgtacatatattgtatttacagtattacATGTATTTGCACAATTATGCAATAAACACTTTGTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017104 True 3013 mRNA 0.39 10 45220114 45227676

Neighbor

gene id symbol gene type direction distance location
AMCG00017103 NA coding upstream 285865 44933056 ~ 44934249 (+)
AMCG00017098 NA coding upstream 296480 44902466 ~ 44923634 (+)
AMCG00017097 grm2,LOC105017167,LOC106565576,LOC106583186 coding upstream 328244 44881865 ~ 44891870 (+)
AMCG00017102 grm2,LOC106565576 coding upstream 343574 44867914 ~ 44876540 (+)
AMCG00017096 NA coding upstream 480313 44715391 ~ 44739801 (+)
AMCG00017113 NA coding downstream 715374 45943050 ~ 46096926 (+)
AMCG00017112 pdzrn3,LOC107584480,LOC107667029,LOC107680714,LOC106582849 coding downstream 1001373 46229049 ~ 46245266 (+)
AMCG00017114 pdzrn3 coding downstream 1085218 46312894 ~ 46327713 (+)
AMCG00017121 NA coding downstream 1185726 46413402 ~ 46415356 (+)
AMCG00017120 NA coding downstream 1188721 46416397 ~ 46419842 (+)
G18255 NA non-coding upstream 234033 44985796 ~ 44986081 (+)
G18186 NA non-coding upstream 505950 44623367 ~ 44714164 (+)
G18197 NA non-coding upstream 548244 44671292 ~ 44671870 (+)
G18196 usp4 non-coding upstream 549236 44669423 ~ 44670878 (+)
G18127 NA non-coding upstream 832165 44387443 ~ 44387949 (+)
G18302 NA non-coding downstream 15808 45243484 ~ 45243983 (+)
G18316 NA non-coding downstream 299068 45526744 ~ 45527005 (+)
G18330 NA non-coding downstream 554521 45782197 ~ 45782467 (+)
G18357 NA non-coding downstream 791665 46019341 ~ 46021345 (+)
G18363 NA non-coding downstream 873390 46101066 ~ 46101623 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 258513 44949034 ~ 44961601 (+)
G18192 NA other upstream 564016 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 1082183 44126214 ~ 44137931 (+)
G17697 NA other upstream 2822327 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 5965624 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 4144346 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 4174855 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 4485791 49713467 ~ 49727567 (+)
G19113 NA other downstream 5324204 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 5331774 50559450 ~ 50563278 (+)

Expression


Co-expression Network