AMCG00017106


Basic Information

Item Value
gene id AMCG00017106
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 45059974 ~ 45068123 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017106
CAGCAGCTATTGAAGATTAATTTTGAGTCGCCACCTATCTCTCCCAAAACTCCCAAGACACCCAGCAAGCTCAAATTATCGAATCCTAAGGGTTCTTCCactctgaaaactgaaaatacaataattagcTGCTTTCTccaaaaaggaaatatttcatCTCCTTCACAACAGGCAAAACCTCAGTCTGCACATGAAGACAATGAAGACACAATGCAAAAACGGCAAAGTACAGTGAAAGAAGAGCCTGTTGAATTGCCTACAACCTCCAGTGCCTCTTCTAACTATGAGGTCCCATCAAGTTTAAGTGACGTTAAGTCCGTTGTCAAAGTGGAATGTCCAGTGTGTGGTGTTGGCATTTCACAGCAGTACATCAACAAACATCTGGACAGCTGTTTAACGAGGGATGAGAAAAAGGACAGCTTGAGAAGcTCTGTcagcaaaaggaaaacaatggcCAAGGTGGTTTATGATCTCCTCTCTGATCGAGAATTGAAGAAAAGACTCAAGGATGTTCTGCTTTCTACACAGGGCAGCAGGCATCAGCTGATTAAACGGCACCAGGATTTTGTACACATGTACAATGCCCAGTGTGACTCTTTAACTCCCAAATCAGcaCAAGAGATCGCAAAAGAAGTTGAAAAGAATGAGAAGCTGCGGACACAGCTTGAAGGCAAATCC

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K10627 RAD18; E3 ubiquitin-protein ligase RAD18

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017106 True 678 mRNA 0.43 4 45059974 45068123

Neighbor

gene id symbol gene type direction distance location
AMCG00017100 oxtr coding downstream 82050 44967273 ~ 44977924 (-)
AMCG00017101 rrp9 coding downstream 158578 44892111 ~ 44901396 (-)
AMCG00017092 emc3,LOC101173295,LOC106583189,LOC101079695 coding downstream 368025 44685616 ~ 44691949 (-)
AMCG00017093 NA coding downstream 375095 44662419 ~ 44684879 (-)
AMCG00017095 NA coding downstream 408125 44640087 ~ 44651849 (-)
AMCG00017107 LOC106582845,LOC106565727 coding upstream 176938 45245061 ~ 45257864 (-)
AMCG00017108 NA coding upstream 225536 45293659 ~ 45305316 (-)
AMCG00017109 NA coding upstream 555003 45623126 ~ 45647218 (-)
AMCG00017110 NA coding upstream 594511 45662634 ~ 45665661 (-)
AMCG00017111 NA coding upstream 798904 45867027 ~ 45899846 (-)
G18219 NA non-coding downstream 230948 44799454 ~ 44829026 (-)
G18164 NA non-coding downstream 671979 44387443 ~ 44387995 (-)
G18156 NA non-coding downstream 682753 44376997 ~ 44377221 (-)
G18101 NA non-coding downstream 921432 44136188 ~ 44138542 (-)
G18066 NA non-coding downstream 1168067 43837177 ~ 43891907 (-)
G18352 NA non-coding upstream 784939 45853062 ~ 45916620 (-)
G18364 NA non-coding upstream 1033837 46101960 ~ 46102188 (-)
G18366 NA non-coding upstream 1034139 46102262 ~ 46106593 (-)
G18405 NA non-coding upstream 1371946 46440069 ~ 46454396 (-)
G18419 NA non-coding upstream 1494971 46563094 ~ 46563573 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 403069 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 1400372 43633770 ~ 43659602 (-)
AMCG00017060 NA other downstream 1751348 43305697 ~ 43308626 (-)
AMCG00017061 NA other downstream 1773371 43280237 ~ 43286603 (-)
AMCG00017051 NA other downstream 2085541 42948991 ~ 42974433 (-)
AMCG00017105 srgap3 other upstream 50167 45118290 ~ 45161137 (-)
AMCG00017158 NA other upstream 3421004 48489127 ~ 48494407 (-)
AMCG00017178 NA other upstream 4419074 49487197 ~ 49494144 (-)
AMCG00017232 NA other upstream 6116108 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 6362564 51430687 ~ 51435239 (-)

Expression


Co-expression Network