AMCG00017107 (LOC106582845,LOC106565727)


Basic Information

Item Value
gene id AMCG00017107
gene name LOC106582845,LOC106565727
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 45245061 ~ 45257864 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017107
atgtattttgtttgttttacagatcCAACCATCATTACTGTGCCTCCTTCAAACATGGATGTAACGGTGGGAGAAAGCATTGTTTTACCCTGCCAGGTGTCACATGATCATTCCCTCGACATTAAATTTACATGGTTCTTCAATGAGCAACTTATACATTTTGGTAGCCACGGAGGTTACTTTGAAAAAGTCGGAGGTCAGCACTCTGCGGGCGATATTATGATCCGAAATATACAACtgaggcatgctgggaaataCACCTGTGCAGTTCAGACAACCGTTGACAGCGTTTCTGTTGGGGCTGACCTTATTGTCAGAGGTCCACCGGGTCCACCAGAGAGCATAAAAGTGGAAGAAATCACTGATACAACAGCTTTACTTTCCTGGAGGCCAGGTCTTGATAATCACAGTCCAATTACCAGTTACACTATCCAGGCAAGAACTCCATTCTCTGTGGGCTGGCAAGCTGTCACAACAGTTCCTCAAGTCACAGGAGGCCGAAAATTGAGAGCCACGGTGGTAGACCTCAGTCCGTGGGTGGAGTATGAATTCCGTGTGGTAGCCAACAATGCTATTGGGATTGGGGACCCAAGTAAACCATCAAGACAAGCAAGGACTAAAGAAACCTTTCCGAAGGTCACCCCTGCTAATGTAAGTGGAGGTGGCGGCAGTCGCTCTGAATTAGTGATCACTTGGGAGCCTGTTCCAGAAGAGCTCCAGAATGGGGAAGGATTTGGATATGTTGTGGCGTTCAGGCCATTGGGAGCCACAAGCTGGATGCAAGCAGCAGTGACTTCTGCTGACGCTTCAAGATATGTCTtcaaaaatgaaagcattacaCCCTTTTCACCTTTCCAAGTTAAGGTGGGGGTATACAACAACAAAGGAGAAGGACCCTTTGGACCTGTGACGACTATTTATTCTGCAGAAGAAGAACCTGGCAGAGCACCCTCTAAGGTTAAAGTAAAGAGTCTGTCTGCTTCTGAGATTGAAGTGTCTTGGAAACCTCTCCCATGGAACACCAGTAAAAGAAGAGTTCTGGGTTATGagCTGAGATATTGGACAAAGAAAGACAAGGAGGGAACCTCAAGTATCCTAAGAACACAGGGAAATAAGACATCTGCAGTTATCCGTGGATTAAAGGGGAGCACACTGTATTATGTTACAGTGCGAGCTTACAACACTGCGGGAGTGGGGCCTTCCAGTGTGACTGTTAATGTCACGACTAAAAAACCACCACCTAGTCAGCCACCTTTGAAGGTTATGTGGAATACATCAAATTCCAAAATTATCCTGAACTGGGACCATGTTAAAGCTCTGGAGAATGAATCAGAAGTCACTGGatacaaaGTCTTATACAAACGCAACAGACAGAGCAGGACTGATGTTgttgaaacaaatacaacatcAGTGGAACTTTCTTTGCCCAGCGACGAagaatatattatacaaatcaaGCCTTTTAGTGATGGAGGTGAAGGGATTAGCAGCAAACAGATTACTATTCCCAGAATATCAGgtccaaaagccattGGCTCAGCATCCAAGGTGTCTACGTTATCAGCTCTCAGTACAATAGCACTCTCCCTCACAGCCAGATCAACGTTATGACAAAAAATAAGCGGACACACATTGGACTTTTCATTTATTGATGAGGTGGCATTATAAAGACTCGGGAAAACTACTTAAATACCATCTAACCTTGCTGATTTATAATGATCCCGTGTTTAGACTTCAGAAAATGACGACAATACTGAAAAtccttcaaaataaacaaaaatggctTCTCTAAAGTTTCCTTGCAGAACCTGAGAACCTGCACTGAAACATCTTTAATATGTTGTTACCAAAGCagctttcataaaaatgttcttatatgcatattttgtatGACATATTTAGCTTTTTATAGATTTCTTTAAATTTGCTATTGAACTGAGCCAGTTGTTTGCatttttccacttctgttccaGTGATGGTTGTGTATACAGGAAATAGCTGCCAGGTATAACTAAGGATTACCATTTCTGTTTCAGTCTGTAGATGTTTGATATTTGTGCATTGTTAAGAGTACCccatcaaaatatttttgaatttcggatcccccccactctctccgTTGAGCACAAAACTGCAGGAAAGTAAACCATGCATTCCCCAGTGTCCAAAGGTGACCAGTCGTAAAAAAGGCACAGCCACAACTTTGCATCAAATGCCTCATGGCAGGCCTGTTCTGTCGCTTCATTATCCCTCTCATCATTCAAttaatatctgtgtgtgtttctgaaaagATGCAGTGTCCTGAGGTGATTGCATAATTGCATACCCCTAAATCTGGTCTTGTACTCTGATGTGGTGATAATGCCCCATATGCacccatgaaaaataaaatactttcataACACTGGTTCTCACTGCAAAGTGTATGCTTcctggctaatttaaataagctttttataaacagttttgattgcatttaaaagGTGATCTCTGAAAAATTAAGTGCATGCAAATCCACATGATTGAATAAGGAATGATAATTGCTTTCTGATGCAACCTCAGCTATGAATACTTTTCCATTAAGTGTGTCATAGACAACTCTGTCTTTATGAAATATggcaaaacataatttaattatttgtgtgaggctattaacaaaatattgaaaagaaagtcTAAACATTTGTTCTGTCAAGAACAAACACATATTGATGTAATAATCACATCAGTCTTGTAAATCTATACAAAGTAACTCTGTTAACTGCATACAAGACAAACTTTTTCTTAAATGCTTCCCTTTATTTAATCACAGAATGACTCTAGATCACTGCATCTTTAACCGCTTTTGTTAAAGCAGGCCCTCTTGGATTGCActcttttctgtctctttcactAATTATTGGTAaggcaattaaaacacattgctTTGCTTTTATCATAGTGAAATGTACAATTACTCTAAAATTAGTTTTCGCATTTTATCCCGttcatttgaaattcaaatacatttaccacAAGCTTCCATGCCTCTTTTGGTGTACTCTTTCTGTATGAATTATGTGGTGAtcccattgtttttctttttgtttgtttggttggttggtttttcTCACAAAGCTGGTAGTATCTCTTCAAAATCTATGCTAGGCCTACTGTTTAAGTTGAGAATGTGCCTCATTGTCGGCTGGTTTTGCAGACCTTGATAAGTTCCTAGTCTTGAACTACCCTACCTAAAACAATATTGTGTAGTTTAAGACTATTACTAATATGGGTCTGTGAAATAAGCCCTGTATGTTTAAATGATGAATCCTCAGGATCTTTAAGAGCCTTAACTTGCacacatgtaaaaatgtattattaataataataataataataataataattaaactagGCAGCTGGTTAAGGCAAGTTCAacacatattacatatacaatacaatatgtattGACATTGACTGgcataatttaaaagtatagTCTGGAAGAACTGTATTGGTCAACTTAAACATATTGCTTACACCACACTTAGAGAGCTGCAGCTCCAACATGAATTATAATTTAGCATGAACAAGGGCAAAGTATATTACCTCTGATATTCTAATGGGTCTTTTAACTGCTGAAATAGACAATAATCAGACGCTGCAGAGTTTCTCTTAGTTTCCAATTGTCTAATGATGAAATGTAATACTGGTACAGTATGTAGCTAGTACTCCAGTGAAGTGAAGATAGTTTTTAGTACCCAAAGGTGCACATTATAGGGTACCATAactgttacaaaaaacaaagtgtgtatgtgt

Function

NR:

description
PREDICTED: contactin-4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017107 True 3798 mRNA 0.39 11 45245061 45257864

Neighbor

gene id symbol gene type direction distance location
AMCG00017106 NA coding downstream 176938 45059974 ~ 45068123 (-)
AMCG00017100 oxtr coding downstream 267137 44967273 ~ 44977924 (-)
AMCG00017101 rrp9 coding downstream 343665 44892111 ~ 44901396 (-)
AMCG00017092 emc3,LOC101173295,LOC106583189,LOC101079695 coding downstream 553112 44685616 ~ 44691949 (-)
AMCG00017093 NA coding downstream 560182 44662419 ~ 44684879 (-)
AMCG00017108 NA coding upstream 35795 45293659 ~ 45305316 (-)
AMCG00017109 NA coding upstream 365262 45623126 ~ 45647218 (-)
AMCG00017110 NA coding upstream 404770 45662634 ~ 45665661 (-)
AMCG00017111 NA coding upstream 609163 45867027 ~ 45899846 (-)
AMCG00017116 p4r2a,LOC107551500,LOC108276138,LOC102785172 coding upstream 1114602 46372466 ~ 46382868 (-)
G18219 NA non-coding downstream 416035 44799454 ~ 44829026 (-)
G18164 NA non-coding downstream 857066 44387443 ~ 44387995 (-)
G18156 NA non-coding downstream 867840 44376997 ~ 44377221 (-)
G18101 NA non-coding downstream 1106519 44136188 ~ 44138542 (-)
G18066 NA non-coding downstream 1353154 43837177 ~ 43891907 (-)
G18352 NA non-coding upstream 595198 45853062 ~ 45916620 (-)
G18364 NA non-coding upstream 844096 46101960 ~ 46102188 (-)
G18366 NA non-coding upstream 844398 46102262 ~ 46106593 (-)
G18405 NA non-coding upstream 1182205 46440069 ~ 46454396 (-)
G18419 NA non-coding upstream 1305230 46563094 ~ 46563573 (-)
AMCG00017105 srgap3 other downstream 83924 45118290 ~ 45161137 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 588156 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 1585459 43633770 ~ 43659602 (-)
AMCG00017060 NA other downstream 1936435 43305697 ~ 43308626 (-)
AMCG00017061 NA other downstream 1958458 43280237 ~ 43286603 (-)
AMCG00017158 NA other upstream 3231263 48489127 ~ 48494407 (-)
AMCG00017178 NA other upstream 4229333 49487197 ~ 49494144 (-)
AMCG00017232 NA other upstream 5926367 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 6172823 51430687 ~ 51435239 (-)
G19335 NA other upstream 6187723 51445587 ~ 51449786 (-)

Expression


Co-expression Network