AMCG00017111


Basic Information

Item Value
gene id AMCG00017111
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 45867027 ~ 45899846 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017111
GATTAATGGGAGTCTCATGTTGTTTGTACATTTCTAGATCCTCTGCCTTTGTGGATCACTTACTGAGATGAACTAAGCTGGAAAACAAATAGCACTGGTATTTCTTAACTGGGATTGCAATTTCCTCTTGCTGTCAAGTGATGAAGACACTTCAGAATGCAGGTGTTATTCCCTTATTTCCCTTGTATGCTATCGTGTGGTTCGTTCAGGGGACCACAGCCCTCGACATCCCACTTGAGGTTGAGCAACTTCCCACTATCACAGAGCAGTCGCCAACCTCAGAAATAGCATTTCCTTTTGATGAGAGCTTTTCCATTAAATGTGAAGCAAAAGGAAACCCAGAGCCAGAGTTTCGATGGAAAAAAGATGGACAGGATTTTCATCCTGATCAAGACCCAAGACTGATAACGAAGGAGAACTCGGGAACGTTTGTCATTAACAACAATGGAAATGTAACTGAGTTCCAGGGGATTTATCGCTGTTATGCTTCCAATAAACTAGGAACAGCTGTTTCACAAGACATTGAATTCATTGTGCCCAatatccCCAAATTTCCTAAAGAAAAGATCCCTCCACTTATAGTCGAAGAGGGGCAATCTGTCGTTTTGCAGTGCAACCCACCGAAAGGCATTCCTCCTCTGCAGATTCACTGGATGACCATCGGTCTGCAACATATTGAACAGGATGAGAGGGTATCTATGGGCCTAAATGGAGACCTCTACTTCTCCAATGCACTGGAGAAGGACAGCCGGAGTGACTACTGCTGTGTTGCTGCGTTTCCAAGAATTCGAACTATCGTGCAGAAAACCGCTATGAGTGTAATCGTCAATAGATttgaatCTGTCAGTGGTTCAGAGTCGCATGATAGCACTGGGGCTAGTGCAAACTCAATCTTGCACAGAAAACCACAGCTTATGTCGCCCCCTGGAGGTCAATCTGACATCCGTCTTGTGAAAGGAGATTTACTCCAAATGGAGTGCATTGCAGAGGGCCTACCAACTCCTAAATATAAATGGGTTAAGGTGGGAGATGACCTGCCGACACGCAGCAGAAAAGAGAACCATGGCAAACTTCTTAGAATACCAAAAGTCAATGCAGATGATAATGGAAGATACATGTGTACAGCTGAGAACTCTCTTGGAAAAACAGAGCATTACTTTACAGTTACAGTTGAAGaACCACCTCAATGGGAAATTAAGCCTGAGAGCCAATTATATATGATTGGATCTGAAGTCACAATTAAATGCACTGCAACAGGAAAACCACAGCCATCCATCATATGGACTGAAAATGGGTTACCTCTACGGGatgcACCTGGCTCTAACAGAAAGATTTTTAGTGACACAATCTTAATTCACAATGCAAAGGCAAACAACAGCGCAGTCTATCAATGTATTGCATCAAACAAACATGGAACCATCCTTGCCAATGCTAACATCATGGTCATGAatgcTACAAAAATTATGGAGCTTCCAGAAGACATAAAGGTAGTAAGAGGAAGTACAGCTCAACTGACTTGCCACGCAGCGTTTGATATATCTTTCAAAAATGACTTTCAAACTCAGTGGAAAAAAGGTGACTTGGAAATGTCTGTTGACAACATCAAAAACACAGGATATTATGTGAACAATGGGGTTTTGCAAATCATTAATGTGAGCCACGAAGACCAAGGAATATACACATGCATTGCCATTACTCCCTTAGACCAAGATGAGGCATCTGCACAACTTATTGTTCTTGatgttcCTGATCCCCCTGTGGACCTGGTGCTATctgaacacaaaaacagaagtgttaaACTGAAGTGGATTCCTGGGGACAGCCATAATAGTTCAATAACTGAGTTTATTGTTGAATATGAAGAGAGTCATTGGGAACCAGGCAAGTGGAAAGAGCTGTTAAGAGTTCCTGGAAATCATGCTTCAGCTCATTTGAAGTTACATGGACATTTGGACTACCAGTTCCGTGTCTCAGCAGTCAATGCCATTGGAAGAGGCCTACCAAGTGAACCAACAGAACGATTCAAAACCCCTCCAGCAGctCCTGACAAGAAtcctgaaaacataaaaatccaaGGCCATTTACCTAACGAACTAGATATATATTGGGAGCCACTAATGCCCATTGAACACAATGCACCAGGGCTGGAGTACAGGATAAGCTACAGGCAGCAAGGCAGTGAGGAAGAGTGGACTGAACAAATTCTAAAGAGACATTCCTTTGTTGTTAAGAAAACCCCTACATTTGTGCCATATGAGATTAAAATCCAGGCAAAGAACCAGCATGGCTGGGGTCCGGAGCCCAAAGTGATCACTGGATATTCTGGAGAGGATTTCCCGGCCGCTGCTCCAGAAGATGTCAATGTAGAAGTTGAAAACAGCACCCTAATCAAGGTCAAGTGGTCCAGAATCCCAAAGGAAAAGATTCAAGGTCACCTTGGGGGATACAGGGTAAACTGGTGGAGGATGAAGAGCTTACTGGAAACTAAGAAGAGTCATGGGGAAAAACACTCTCTGACTTTTACTGGGGATAGAAACCATGGGATGGTCCCAGGGCTTAAACCTTTCTCTGAGTACAGTCTAATCGTGATGGCCTTCAATGGACGTGGCAATGGTCCAGGAAGCCTCCCTGTCATGTTCTCAACTCCTGAGGGAGttcCTGAACAAACACCCATATTCAAAGCTACAAATCCTAAACAGAATTCAATTACTCTCATTTGGGCACCACCTTTGGAGTCTAATGGCATCCTTATGGGATATATCTTCCAATATCAGCTAAtcaATGACACAAATGATCTTGGCAATCTGCACACTGTCAACATCAGCAATCCAGAAACAGCAATCTGGGTCGCTCAGGATCTGGAGCCTCACAGCAAGTACAAGTTTTATTTGAGCGCCTGCACCAGAGTAGGCTGTGGGAAACCAATTACTGAGGAAGGAACAACCATCATGGATGCTCGTAAgACAGCCAACCACTCTTTCTATTCCAAGTACCACTCTTTCCCCAGTTGCCAATGCCACCCTTTCTTCTATAGACTTAAATTTAGAGTCAAAGAAAAAGAGGACTTGCATCCCGACCTTGAATCCCAAGTTATGAATGATGATACATTCTGTGAATACAGtgataATGATGAAAAACCACTGAAGGGAAGTCTCCAGTCCCtcaatgcagaaattaaagctgCCGAGAGTGGAGACAGCCTGGTTGACTATGGGGATGACGAGCACGGCCAGTTCAATGAAGATGGATCTTTTATTGGCGAGTACACCGGCCACAAAGACAGGGGATCCATGGAAGTAAAAGGGACCCATCAAATTACAGCATAAGGAGACAATTAAGGCCCTGAAAAATTAATGTATACTCTCTTCAGACAAAAAGCTAACGATATCAATCACCCACACCACTGAAACTGAGCTGAAGGATACAGTTATTACCTGATGAGTTGTGATTCTGGCAATTTTACAGTAGATGCATTCAAAGAAAATCGATTACACTGATTAATCAATTGTCAAAAACGTTTAGCAAAAGGATGTGTATAATTGTTCccaataacacaaaaaaataacctCCTCAGTACACCTCAGAAAGAGTTACTCATCATTTTATATAGTTCTCACACATTATCCTAGGAAGTTTTATGATTAACCAGTAGTTGAGATGTTGAGAACTTGAATTATTCTGTAGAGCATTTTCACTGGTGTGGCTTGATTGACACCGCGTGGTTTGCACACCCGGTGAGATGGCCATTCAAATTTATAAATTATGCGGGGCCTCTACATAATCAACTTTAATgtcaaaagaaaggaaaacattatAATGCAAAGTTTGAAGGAAGAATAAGATATGGCTAAAGCTATGTATAGCACAACTTTATTTGAATGAAAGAAACTTATCAGTCACACTGCCATGTAAACATGCTGTATGGCAAAGCGCCTGCATACTGTAAAACAATTGTGATCGTTTTTccaatttatacatttgtgctttgttttatatatagtcCGATACATTTAAACTACTTGGCTTTAGATAATATGGCACATTGTTTGTATTCTGTACTACattttacaagaacaaaaacaaaacaaaatattcatatCTCCTGTCAATGTTCAATTTAtttatggattaaaaaaatatatgtaatttttacatttaatcttcAGACAATGTTCTCTCAGCTTTCAGTTCCTCTGTTTCAACTcattgcatgtatgtgtatgtatagatACAGTATGCAAACAGTATTGATCTTTTGCAAAGTAGAATACAACAGGGAATGAGGTACCATATTATATAAACTTATAATGAGGGCAGATTGCTACATTTACAAATTTGAAAGCCATTTACTACTTAAATATTTCACCCATacgtttttcattttgtgataGCTACAGGTGGAGTCTCCCTTTATGTTACTTAAAGAtcatgtttatttcatattagccacattgaggtacaaataaaatcacaagccTAGTGAGACGGGTCAGACAATATGTATCTGAACCATAaccatatattttacatttagttcGTGCCTATTATGAAttgcttaatattttatttttttacgcAACTTGTCATGATTAGATGTAcatattttagaagaaaaatcacaaaaggcttcctttttttatttgtattatgatgtAGCTTTTCTAGAGGACAAAAACTTATATTCCCATACCGAGACCTCAGGGAATGTGAAAATAAGTTGTTgcttttgttagattttttcctTCCCCAGAACTCCCCAGATGCTCTGATTAAGTGggtaaactgaaaataaattacattatacattacaattatgCCTACTTAATTATACTGCTGCCTAGAGTATGGTTGCTCTCATTGACAATGAAAGaagtctgcaaaaaaaaaaaaatgacactgaaATGGCATGAAGATTTCCTGCTCAATATTTGACTGTGTTGtaagccattttcatttgtatacGACCTATTTTAAAGATGCATGATGGTTAATTGTCAATTTCAACTTTTTTACGTACAAAActatgttgcttttttattattttgacacGTGTGTGGAATGCATTCATTCTGGAGAGTATATATGGTGTTTCCAAATGTCACAGACAAACTCCAGTAAGGACAAATTATAAGTTTTATTTTGGGCAATGAAACTTTGTTACTGAAATGGCATagactattttagtttttcctctaTAGTATgggtgtgattttttttttttgtcataccTTTGAAGTTAAAATTATGAAACTGTATACAGGCAACTTTAACTACTGGTGTGAAATTATACAAATTGCCTAGAATAATGAAGGCTGATACCTTAATGAAGCTAACATTACTACTGGtagaacagaagacaaaagcCAGGATTTTGCCCCTGCTTAAGCTGCATCATGTCAATATATCATGATTGAGCATCCTGCTTAAAGTATActgagatgaaaaaataaattgtgtatatatatatatatatatatatatgttttaggCTTGTACAGATATGATTTACCACATCAATttgagcaaaaaataaaatcagtacattaagtacatttaaaaatgtagttttacataatcatatatatatacatgaacaTAACTTGGGAAATAATTGCTCTTTCTTTGGTGACATTTCCTTGCCCCTTTGTTTCAATGCAATTGACAAGAGTAAATGTGTTCCTCTGTTGATTGTACAAAGCCTGAATCATAGCTCATGCTGGGAAGCAAAACATAAGTTGTTTAAAAAAGGTCTTAGTAAGTGAAGTTCAAGGGGAAATTCACAAAGAATCTTATATGGTGGAGGTAGAGGGACATTTAGAGAAAAAGTACTCCCAACACTTTCATCTAATTCTCATAAAgtgttataaataatgtaaaactcAGGTCAATGTCGCCGTTTGACTAGGAGGCCTGACAGAAACTAGTAAGGAAAGGAATAGCTGCCTTAACCTAAGAAGAAAAACGAGCTCCCCCAAGCCGTAAATCTCTCGACATGTGAACAGTTAGAGGTTGTTTCACATATTAGAGTTTGAGATTTAAATCTCATCGTCTTTCCTTGGGGATAATCCTAAACAGATAGCCGCCATCACAAAAAAAACTCAACCCAAACGAAAGTGTCTCTTATTTTCATCATGTTTAATATGTAATACACTAATGCTACTCGAACAAGCAGGCAaaagaatatattaattcatacaaaagtattttattttgggtaGCCAGGGACGAAGCCACTAAGCAGTATAGCTTACCTTACTACTTTAGTCAttgctttattcatttaatCACTTGCAAAAATGAATTGTGCTTTGTAATTTGAAAGATACATCTGAAGGCACTTTGAAGTAGTGTTGCTAATGGGCTTTTGTTAAACAAGCtggttattttaaacagtaataCCTACAATTATATTTGGTATAGTACAAGCCTTTAatctaattaataaaatgaattcatGTTAATATTGCTATTGGATcttaactgtacattttgatGCTTTTATGCTCAAAGTGATTGTGATATACCTACTGTATGTCAACATCTGTTTTACTCCTCCTTCCTTGAGTCACTTTGGCAAAACCTGCATAAACCTTTTTAACATCATGCTAAGTTAGCACAAAGTTGTGAAAAACTGTTGCATTCGTCTTTTTGGATGCCTAGAGTAAACTTAgtcaactttttcttttttttttccaataagtgtttgattttaaacttttaataagATGAGTAGTAATCGTAATATGCCATAAAAAGTTATATGAATATGGCCCAATGTGTTTTAAACAGTGCATAtatgatattatttattaaataagaaCCTCTCTGtcttattgtattatgtaaagcCTCCATTATGAAAGGTATtgatatttgtaacattttgcaCACCCTTACTTCAGCTGGAAAAAGTCATTCTATCATTGAACCaaagtatgatttattttatacttgtaCAATAAACTGTTTCATTACCTTGAACTTGTATCAAGTTTAACATTGACccatttttacagtttgtatgctgacatttgatttgtaaaatGACATAGTTGCATTGTCTTAAACAGgctaaatattattaaacaaaaaaggaaaaaaaacaaggatgttatgcattttcaatatgtattttaccatgaaatgtaatgttatttacgAAGACATTAAAAGATGTATCCATTGAGTTTAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017111 True 7194 mRNA 0.37 25 45867027 45899846

Neighbor

gene id symbol gene type direction distance location
AMCG00017110 NA coding downstream 201366 45662634 ~ 45665661 (-)
AMCG00017109 NA coding downstream 219809 45623126 ~ 45647218 (-)
AMCG00017108 NA coding downstream 561711 45293659 ~ 45305316 (-)
AMCG00017107 LOC106582845,LOC106565727 coding downstream 609163 45245061 ~ 45257864 (-)
AMCG00017106 NA coding downstream 798904 45059974 ~ 45068123 (-)
AMCG00017116 p4r2a,LOC107551500,LOC108276138,LOC102785172 coding upstream 472620 46372466 ~ 46382868 (-)
AMCG00017115 NA coding upstream 486572 46386418 ~ 46403301 (-)
AMCG00017122 NA coding upstream 584091 46483937 ~ 46607444 (-)
AMCG00017126 LOC106907125,LOC106941653,LOC107666963 coding upstream 1006647 46906493 ~ 46916078 (-)
AMCG00017125 NA coding upstream 1018514 46918360 ~ 46930810 (-)
G18219 NA non-coding downstream 1038001 44799454 ~ 44829026 (-)
G18164 NA non-coding downstream 1479032 44387443 ~ 44387995 (-)
G18156 NA non-coding downstream 1489806 44376997 ~ 44377221 (-)
G18101 NA non-coding downstream 1728485 44136188 ~ 44138542 (-)
G18066 NA non-coding downstream 1975120 43837177 ~ 43891907 (-)
G18364 NA non-coding upstream 202114 46101960 ~ 46102188 (-)
G18366 NA non-coding upstream 202416 46102262 ~ 46106593 (-)
G18405 NA non-coding upstream 540223 46440069 ~ 46454396 (-)
G18419 NA non-coding upstream 663248 46563094 ~ 46563573 (-)
G18421 NA non-coding upstream 664085 46563931 ~ 46564202 (-)
AMCG00017105 srgap3 other downstream 705890 45118290 ~ 45161137 (-)
AMCG00017091 brk1,BRK1,LOC106565571 other downstream 1210122 44653455 ~ 44656905 (-)
AMCG00017067 sumf1 other downstream 2207425 43633770 ~ 43659602 (-)
AMCG00017060 NA other downstream 2558401 43305697 ~ 43308626 (-)
AMCG00017061 NA other downstream 2580424 43280237 ~ 43286603 (-)
AMCG00017158 NA other upstream 2589281 48489127 ~ 48494407 (-)
AMCG00017178 NA other upstream 3587351 49487197 ~ 49494144 (-)
AMCG00017232 NA other upstream 5284385 51184231 ~ 51212373 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other upstream 5530841 51430687 ~ 51435239 (-)
G19335 NA other upstream 5545741 51445587 ~ 51449786 (-)

Expression


Co-expression Network