AMCG00017112 (pdzrn3,LOC107584480,LOC107667029,LOC107680714,LOC106582849)


Basic Information

Item Value
gene id AMCG00017112
gene name pdzrn3,LOC107584480,LOC107667029,LOC107680714,LOC106582849
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 46229049 ~ 46245266 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017112
ATGGGATTTGAGCTGGATCGCTTCAATGGGGCCGTGGACCCTGATTTCAAATGCAACTTGTGCAATAAAGTTTTGGAGGATCCGCTCACCACTCCGTGCGGTCACGTCTTCTGCGCCGGCTGCGTCTTGCCCTGGGTCATCCAGCAGAGCAGCTGCCCGGTGAAGTGCCAAAGGATTTCCACCAAAGAGCTCAACCACGTCCTCCCCTTGAAAAGCCTGATCCTGAAACTGGACATCAAGTGTGACAACCACGCCAGGGGCTGCGAGAAGGTGGTGAAGCTGCAGCACCTCGCTGAGCACGCAGAGATGTGCGACTACTCTCCGGCCAAGTGCAGGAACAAGGGATGCAGTGAAGTCCTGAACCTCAAAGACATGGATGCCCACATGCGAGAAGCGTGTGATTACAGACCAGTGGGGATTTGTGAACATGGATGTGGTTTGATGCTGGTCCATAAAGAGCAGAAGTTAGGGCACCATTGCTGTCTGGATGCTCTGAAGGGTCACAACAGCGCGTTGCAGGCTAAGATTGTAGGCTTGGATAAGGAGTTGAAGAAGCAGTCTCTGAAGTCCAGCAAAAGGGAGAAATCTCTCCTGGCTCAGCTGTCCTCGGTTCACAACGAGTTGCAAATGACAGCCCTGAAATACCAAAAGAAATTCACTGAATACAGTGCCAGGATCGACTCCCTGACTAAAAGTCTCACCCCTCCGTGCAAGGGTGGAGAGACAAAAAACCTCAAAGTCGTCCTTCATCGTGAATCCGGATCTCTGGGATTTAATATTGTGGGTGGCAGACCTTGCGCGgACAATGAGGATGGTTCTTCAAATGAAGGAATCTTTGTTTCCAAAATAGTGGAGAATGGGCCGGCTGACAAGGAAGTGGGTCTGCAGATCCATGACAGGATTATGGAGTCACAGTTCAGAATGAAGTAA

Function

symbol description
pdzrn3 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in neuromuscular junction development and protein ubiquitination. Predicted to be located in cytoplasm. Predicted to be active in neuromuscular junction.

NR:

description
PREDICTED: E3 ubiquitin-protein ligase PDZRN3-like

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017112 True 930 mRNA 0.51 4 46229049 46245266

Neighbor

gene id symbol gene type direction distance location
AMCG00017113 NA coding upstream 132123 45943050 ~ 46096926 (+)
AMCG00017104 NA coding upstream 1001373 45220114 ~ 45227676 (+)
AMCG00017103 NA coding upstream 1294800 44933056 ~ 44934249 (+)
AMCG00017098 NA coding upstream 1305415 44902466 ~ 44923634 (+)
AMCG00017097 grm2,LOC105017167,LOC106565576,LOC106583186 coding upstream 1337179 44881865 ~ 44891870 (+)
AMCG00017114 pdzrn3 coding downstream 67628 46312894 ~ 46327713 (+)
AMCG00017121 NA coding downstream 168136 46413402 ~ 46415356 (+)
AMCG00017120 NA coding downstream 171131 46416397 ~ 46419842 (+)
AMCG00017117 rybp,rybpb,LOC107599415,LOC107732045,LOC107680715 coding downstream 261061 46506327 ~ 46508536 (+)
AMCG00017119 NA coding downstream 354494 46599760 ~ 46600717 (+)
G18365 NA non-coding upstream 122531 46105597 ~ 46106518 (+)
G18363 NA non-coding upstream 127426 46101066 ~ 46101623 (+)
G18357 NA non-coding upstream 207704 46019341 ~ 46021345 (+)
G18330 NA non-coding upstream 446582 45782197 ~ 45782467 (+)
G18316 NA non-coding upstream 702044 45526744 ~ 45527005 (+)
G18386 NA non-coding downstream 126701 46371967 ~ 46372406 (+)
G18420 NA non-coding downstream 318704 46563970 ~ 46564202 (+)
G18430 gpr27,LOC106582853,LOC107713489,LOC107599437,LOC106565734 non-coding downstream 360264 46605530 ~ 46608382 (+)
G18462 NA non-coding downstream 673080 46918346 ~ 46920546 (+)
G18464 NA non-coding downstream 685315 46930581 ~ 46930895 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 1267448 44949034 ~ 44961601 (+)
G18192 NA other upstream 1572951 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 2091118 44126214 ~ 44137931 (+)
G17697 NA other upstream 3831262 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 6974559 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 3126756 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 3157265 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 3468201 49713467 ~ 49727567 (+)
G19113 NA other downstream 4306614 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 4314184 50559450 ~ 50563278 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_11779096_11787055 NA coding CI01000340 null 11779091 ~ 11788759 (-)