AMCG00017113


Basic Information

Item Value
gene id AMCG00017113
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 45943050 ~ 46096926 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017113
ATGTCCTGCACCTCTCTGTCCGGGGAGCCGTGCAGCCTCTTCACATTGTCAGATGTGTTGCATTCTTCACCGTGGAGGGAATCTCCTGCCACAGACTCCCTCCAGGCCCCAGgcACACTCTTTGTAGGGAGAGaAGATAGAATATTCAATGGGCCTAGCTGGATAACTGAACCAAGTGATCTCATCCTTCCTATTGATTCACCTGACCAGGAGGCAACCTTGACCTGTGAGGCCACGGGGAATCCTTCTCCACAATATAGATGGTCACTAAATGGAACTCGCATTGATCTCAGCATTGACCACCGACGTCTCTTGTCTGGAGGCAGCCTGATAATTAAAAGTCTGGACAAAACCCAAGATACAGGAATATACCAGTGCATTGCAACAAATTCATTTGGAACAATTGTTAGCAGGAAAGCAAGCCTACATTTTGCATatcttGACAATTTTAAGACTCAGTCGAGAAGTGCAGTGTCGGTTCGTGAAGGACAAGGAGTAGTGCTGCTGTGTGGACCACCTATGCATTCTGGCGAACTAACATATGCATGGATCTTCAATGAATATCCATATTTTGTGCAACAAGACAATCGACGTTTTGTGTCTCAAGAGACAGGAAATCTGTATATTGCCAAAGTTGAGCCGTCAGATGTAGGCAACTACACCTGTGTTGTGGTCAACAGTATAACAACAGGAAAAGTTCTGAGTTCACCTACACCTTTAGTTCTGAGGAATGATGTTCCTGAAATAACTTGGAGAAGGACAAATGGTGTACCATTTCCAAGTAAAGTTAAAATGAAGAAATCCAGTGCAGTCCTTGAaatcccaaattttcagcaagACGACACAGGGGGATATGAATGTGTTGCAGAAAATACAAGAGGCAAAAATGCTGCAAGAGGCCGTCTCTCTTTTCATGCAAAGCCTCACTGGATACAAACCATGAAAGATGCATCTATTTCGATAGAGGACCATCTTTTTTGGGAATGCAAAGCCAGTGGTAAACCAAAGCCTTCCTGCAGCTGGCTAAAGAATGGAGAGCCTATAACAGTGGAGGAtagaatacaaattgaaaatggaGCTCTTTCAATAGCCTCTGTAAATCTGTCAGATTCCGGGATGTATCAATGCGTGgctgaaaacaaacatggtATTATATATTCTAGTGCTGAGCTAATGGTGTTAGCTTCTGCTCCTGATTTCTCAAAGAACCCACTAAAGGGCTTGCTTAAAGCTCGCTCAGGCAGCGAAGTGATTTTAGAGTGCAAGCCCCAAGCTTCTCCCAAAGCAATTAGCTTGTGGAAGAAGGGGAATGAGATTCTTCACAGAAATGAAAGAATTACTCTTCTTGAAGATGGAACCcttaaaattacaaatgtcaCCAAAACTGATGGAGGAACTTATACTTGTGTTGCAAGAAATCAGTTTGGAATAGCAAGTACCACAGGGAGATTGCTCATCACAGACCCAACAAAGATTACCCAGGGACCAACAAACATGGAAATAATAGTCGGAGAAAGCATCGTGTTGCCTTGCCAGATTGCCTGTGATCCAGCACTGGATGTGTCTTTTTTCTGGTCTTTTAATGGGGAACCAATAGATTTTGAGAAGGATGGGGATAATTTTGAAAAAGTGGGAGGGGTAAATGTGGAAAGCTTATCAGCTGCAGCAGTCTTAATTGTAAAAGGTCCCCCGGGCCCTCCAGAAGCAGTAACAGTGGAAGAAATCACAGATAGCACTGCTCAGCTGTCTTGGAGGCCAGGCAAAGATAATGGAAGCCCTATTACTAGCTACATCATTCAAGGAAGAACACCATTTACTGTGGGATGGCAGGCCGTGGAAACGGTCCCTGAAATCATTGAGGGTAATACATTAACAGCTACAGTAGTGGATTTAAATGCTTGGGTGGAGTATGAATTCCGTGTTGTGGCATGTAACAGTGTTGGAGTTGGGGAACCTAGTCCATCATCCATCAAGACTAGAACAGAAGATTCAgTTCCTGACACAGCTCCTACTgatgttggtggtggtggtggcatCAAGTCAGAATTAGTAATTACATGGGAGCCTGTCCCAGAAGAACTGCAAAATGGTGAAGGCTTTGGATATATCATTGCATTTCGACCTATTGGCACAGTAACTTGGACACGAGCGGTTATATCCACACCAGGAGTTGTGAGATATGTCTTTCGGAACGACAGCATTTTGCCATTTTCTCCTTTTGACGTTAAGGTTGGAGCATACAATAATAAAGGAGAGGGACCTTTCAGCTCAATAACAACTGTATTTTCCGCAGAAGAAGAACCCAGTATTGCACCAGAGAGAGTTTCAGCTCGAAGTATTTCTGCTTCACAAATTGAAGTTTCCTGGCAGGCCCTTTTTTCTAAGATGACTTCTGGAAGGGTCCTTGGATATGAGGTTTCTTACTGGGAAGACGATACAAAGCCTGACTCAATAGGAAAATTGAGGGTATCTGGAAATCAGACGTCAGTAAATATTACTGGCTTGAGAGGAAACAGCTTATACAACTTGGCAGTGAATGCATTTAATACTGCAGGAACTGGACCATCTTCTGCTTCTATTAATGCCACCACTAAAAAACCAccACCCAGTCAACCTCCAGGAAATATTGAGTGGAGCTTGATTGGCTCAAAGCTAACTTTAAACTGGGACCCTGTGACAGCGATGGAAAATGAATCTGAAGTTACAGGGTATCAAGTATTATGCAGAAGACACCGGCACAATGATGTACATTCTGTCACTACTAACAAGACCACAGTGGAGTTGAACCTTCCTACACGTGATGACTATTCCATACAGGTCAAAGCCTTAAGTGAAGGAGGGGAAGGAGCAGGTAGTGAACAGATTAGAATTCATCAATTAAGTAAGTCTgtcctttttcaatttttaaatgaatgtggtTTTAATGACTTAATTTCGCACTCtgtaaattaa

Function

GO: NA

KEGG:

id description
K06761 CNTN3; contactin 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017113 True 2952 mRNA 0.43 22 45943050 46096926

Neighbor

gene id symbol gene type direction distance location
AMCG00017104 NA coding upstream 715374 45220114 ~ 45227676 (+)
AMCG00017103 NA coding upstream 1008801 44933056 ~ 44934249 (+)
AMCG00017098 NA coding upstream 1019416 44902466 ~ 44923634 (+)
AMCG00017097 grm2,LOC105017167,LOC106565576,LOC106583186 coding upstream 1051180 44881865 ~ 44891870 (+)
AMCG00017102 grm2,LOC106565576 coding upstream 1066510 44867914 ~ 44876540 (+)
AMCG00017112 pdzrn3,LOC107584480,LOC107667029,LOC107680714,LOC106582849 coding downstream 132123 46229049 ~ 46245266 (+)
AMCG00017114 pdzrn3 coding downstream 215968 46312894 ~ 46327713 (+)
AMCG00017121 NA coding downstream 316476 46413402 ~ 46415356 (+)
AMCG00017120 NA coding downstream 319471 46416397 ~ 46419842 (+)
AMCG00017117 rybp,rybpb,LOC107599415,LOC107732045,LOC107680715 coding downstream 409401 46506327 ~ 46508536 (+)
G18330 NA non-coding upstream 160583 45782197 ~ 45782467 (+)
G18316 NA non-coding upstream 416045 45526744 ~ 45527005 (+)
G18302 NA non-coding upstream 699067 45243484 ~ 45243983 (+)
G18255 NA non-coding upstream 956969 44985796 ~ 44986081 (+)
G18186 NA non-coding upstream 1228886 44623367 ~ 44714164 (+)
G18363 NA non-coding downstream 4140 46101066 ~ 46101623 (+)
G18365 NA non-coding downstream 8671 46105597 ~ 46106518 (+)
G18386 NA non-coding downstream 275041 46371967 ~ 46372406 (+)
G18420 NA non-coding downstream 467044 46563970 ~ 46564202 (+)
G18430 gpr27,LOC106582853,LOC107713489,LOC107599437,LOC106565734 non-coding downstream 508604 46605530 ~ 46608382 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 981449 44949034 ~ 44961601 (+)
G18192 NA other upstream 1286952 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 1805119 44126214 ~ 44137931 (+)
G17697 NA other upstream 3545263 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 6688560 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 3275096 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 3305605 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 3616541 49713467 ~ 49727567 (+)
G19113 NA other downstream 4454954 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 4462524 50559450 ~ 50563278 (+)

Expression


Co-expression Network