AMCG00017114 (pdzrn3)


Basic Information

Item Value
gene id AMCG00017114
gene name pdzrn3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 46312894 ~ 46327713 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017114
ATGACAGCACGTTATTCTCAAGCTGTTCGGTATGATTTCAGCCTCATCAGactcttaaaaatacaaacacttgGTTTTGAACAGGTCAATGGGAAAGATTTGTCCAAAGCAACCCATGAGCAAGCAGTGGAGGCTTTCAGGACAGCCAAGGAGCCAATTGTGGTGCAGGTCCTCCGAAGAGCTCCACGCATCAAAGTCCTGAACCCTACCCATGAGTCCCAGCTGGCTGACACTAGCACGCAGACAGACATCACCTTTGAGCACATCATGGCACTGGCAAAACTGCCTCCCACCCCACCTGTTGCGGTTCTTGAGCAGTACCTTTTGCCAGAAGAACATTCCCCAGGCCATGAATACTATGACCCAAATGACTTCTTGGAAGGTATGCATCCGGAAATGGAAAGAGAAGAGCTGGAATATGAGGAAGTAGATCTGTACAGACTGAACAGCCAGGACAAACTCGGACTGACGCTGTGCTACAGAACCGACGACGAGGATGACACTGGGATCTACGTGAGCGAGATTGACCCTAACAGCATCGCTGCTAAAGATGGCCGAATAAGAGAAGGAGATCGTATTATCCAGATAAATGGCATAGAGGTGCAAAACAGGGAGGAAGCTGTTGCTCTGCTTACCAGTGAAGACAGTAAAAATGTGTGTCTCCTTGTGGCCAGACCTGAGATTCAGCTGGAtgaaggatggatggatgatgaCAGAAATGACTTTCTCGATGATTTACACATGGATATGCTGGAACAGCAGCACCACCAGGCTATGCAATTCACTGCCAGCATGCTCCAGCAGAAAAAGCACGATGAAGATGGGGGGACTACAGACACAGCCACAATTTTGTCTAACCAACATGAGAAAGACAGTGGTGTGGGGCGTACAGATGAGAGCACAAGGAACGACGAGAGCTCAGAGCAGGAGAACATGGGAGATGACCAGACCACTTTGTCCAACACCTTAGGTAGTCACAAGAAGCTCGCCTACAGCCACGACACTCTCGGCAGCGGGGATATGCAGTTCAGCAATGAGTCCTTCATATCTGCAGATTATACGGACGCGGACTTTCTGGGCATCCCTGCCGATGAGTGCGAAAGATTCCGGGAGCTTCTGGAGCTGAAATGCCAAGTGAAGAGTGCCAACCAGTACAGCCTGTACTACCACACAAGCACAACGGATGTGAATAAAAGTGACCAGGAGAGCGTCGATAAGGAGCTGGAGATGCTGAATGAGGAGCTGAGAAACATAGAACTGGAGTGCCTGAACATCGTGAGAGCTCACAAGATGCAGCAGCTGAAGGAGCAGTACAGAGAGTCATGGATGCTGCACAACAGCGGCTTCCGCAATTACAACACCAGCATCGATGTTCGCAGGCACGAGCTGTCTGACATCACAGAGCTGCCAGAGAAGTCGGATAAGGATAGCTCCAGTGCCTACAACACGGGGGAGAGTTGCCGGAGCACCCCTCTCACGCTGGAGATGTCCCCGGACAACTCTCTGCGAAGAACTGCAGAAAACATCCAAGGCGGCGAAGGGGTGGCCGCCGGCGCATCGGGGCCACACGGTTTGCCTCAGAAGCCTTTGTCGTTGCAAGTCGGATGTCAGGAGTCCAGCTCCATTAAAGGGCGCTCGTCCTCCAAGGATTCAGACTCCAGCAAGCAATCAGAAGGGAAGGAGAGGAAAGCTGGGGAGGCCAGCAAACTGTCCAAAAGCCCCAGCTCTTGCTTATCCTACCCACACTCTCCATACAAGCATGCTCACATCCCGGCCCACGCCCAGCACTACCAGAGCTACATGCAGCTGATTCAGCAGAAGTCGGCAGTGGAGTACGCCCAGAGCCAGATGAGCCTGGTGAGCATGTGTCGAGACCCCAATTCGCCCAGCCAGCTGGAGCCCAAGATGGAGTGGAAGGTGAAAATCAGGAGCGACGGGACGCGGTACATCACCAAGAGGCCCGTCCGGGACAAGCTTCTCAAGGAACGTGCCATGAGGATCAAAGAGGAGCGCAGTGGCATGACCACAGACGACGACGCCATCAGCGAGATGAAGATGGGCCGCTACTGGAGCAAAGAGGAGCGCAAGCAGCACGTGGTGAGAGCGAAGGAGCAGCGGCAGAGACGGGAGTTCATGAAGCAGAGCAGACTGGATTGCATGAAGGAGCAGGGAAGTggagaggagaaaaaggaaTTGAACATCATTGAACTGAGCCACAAAAAGATGATGAAAAAGAGGGGCAAGAAAATCTTTGACAATTGGATGACAATCCAAGAACTGTTAACTCATGGCACAAGGTCACCCGATGGAACGAGAGTGTACAATTCCCTTTTATCTGTAACTACTGTGTGA

Function

symbol description
pdzrn3 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in neuromuscular junction development and protein ubiquitination. Predicted to be located in cytoplasm. Predicted to be active in neuromuscular junction.

NR:

description
PREDICTED: E3 ubiquitin-protein ligase PDZRN3 isoform X3

GO: NA

KEGG:

id description
K15682 PDZRN3_4, LNX3_4; ligand of Numb protein X 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017114 True 2352 mRNA 0.52 8 46312894 46327713

Neighbor

gene id symbol gene type direction distance location
AMCG00017112 pdzrn3,LOC107584480,LOC107667029,LOC107680714,LOC106582849 coding upstream 67628 46229049 ~ 46245266 (+)
AMCG00017113 NA coding upstream 215968 45943050 ~ 46096926 (+)
AMCG00017104 NA coding upstream 1085218 45220114 ~ 45227676 (+)
AMCG00017103 NA coding upstream 1378645 44933056 ~ 44934249 (+)
AMCG00017098 NA coding upstream 1389260 44902466 ~ 44923634 (+)
AMCG00017121 NA coding downstream 85689 46413402 ~ 46415356 (+)
AMCG00017120 NA coding downstream 88684 46416397 ~ 46419842 (+)
AMCG00017117 rybp,rybpb,LOC107599415,LOC107732045,LOC107680715 coding downstream 178614 46506327 ~ 46508536 (+)
AMCG00017119 NA coding downstream 272047 46599760 ~ 46600717 (+)
AMCG00017118 eif4e3,LOC107727004,LOC107681400,LOC107666244,LOC107568047,LOC107705706 coding downstream 283003 46610716 ~ 46621777 (+)
G18365 NA non-coding upstream 206376 46105597 ~ 46106518 (+)
G18363 NA non-coding upstream 211271 46101066 ~ 46101623 (+)
G18357 NA non-coding upstream 291549 46019341 ~ 46021345 (+)
G18330 NA non-coding upstream 530427 45782197 ~ 45782467 (+)
G18316 NA non-coding upstream 785889 45526744 ~ 45527005 (+)
G18386 NA non-coding downstream 44254 46371967 ~ 46372406 (+)
G18420 NA non-coding downstream 236257 46563970 ~ 46564202 (+)
G18430 gpr27,LOC106582853,LOC107713489,LOC107599437,LOC106565734 non-coding downstream 277817 46605530 ~ 46608382 (+)
G18462 NA non-coding downstream 590633 46918346 ~ 46920546 (+)
G18464 NA non-coding downstream 602868 46930581 ~ 46930895 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 1351293 44949034 ~ 44961601 (+)
G18192 NA other upstream 1656796 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 2174963 44126214 ~ 44137931 (+)
G17697 NA other upstream 3915107 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 7058404 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 3044309 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 3074818 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 3385754 49713467 ~ 49727567 (+)
G19113 NA other downstream 4224167 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 4231737 50559450 ~ 50563278 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_11695434_11705476 PDZRN3B, PDZRN3 coding CI01000340 null 11694675 ~ 11705798 (-)