AMCG00017117 (rybp,rybpb,LOC107599415,LOC107732045,LOC107680715)


Basic Information

Item Value
gene id AMCG00017117
gene name rybp,rybpb,LOC107599415,LOC107732045,LOC107680715
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 46506327 ~ 46508536 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017117
atcGACAGGAAGCCTAGAATAAACTCCCAGCTTGTGGCGCAACAAGTTGCTCAGCAATATGCTACTCCTCCACCTcccaaaaaggagaaaaaagaaaaggctgagAGGCCTGAGAAAGAAAGAGCTGACCCTGACCGGCCCGAGAGAGTCCGGCCTGAGAAGGAAAGgccagagaaagagaaaatcgATAAGGAAAGGCCTGAAAAGGAGAAACCcgataaagaaaaagaaatcattCCAACAGTGACCAAAAAACCCAGCAGCAAAAAGACAAAACCTAagtcagatattcagcaagggCCTCCCAGTGAAATTAACAGTATACAGTCTGGcaattcaacaactaagaccaACAGCACCCACATTTCCAGGcccaaactgaaaaatgttgaCAGAAGTACTGCACAGCAGCTTGCAGTAACAGTGGGCAACGTCACAGTAATTATCACAGACTTCAAAGAAAAAACCCGTTCCTCTTCCACATCGTCGTCCACAGTGACGTCTAGCACGGGGTCAGAACAACAGCACCAGAGTTGCTCTGGATCCGAAAGTACGGACAAAGGCTCCTCGCGCTCTTCAACTCCGAAAGGCGACCTCTCTGCAGTCCACGATGAGTCTTTCTAAGCACTGTACATGGAAACGTGAATATCATCCAGGGTTTGAAATTCAGATCCCCCCAACTGCCCTCCCTGTGGATACAGAAAGATTTGCATAGCGTTCACACCGATGCTCGGATATCTCCCTGGATCTGTATGTACTCTTCACATTCGGGATGAATACAGCTTGCTTTGGGCAGCTGGTCAGACAGGAATTTCACCCCCTGATGACACCCTGACACTTTTATGTATTCCATTGTTTTATATGATTTTCCTAATGATCATTTGTAAATGGATGTGCGGCCAAACCAACTTTTTTATAAAATCTGCTGTGCACAATTTTTCCATGtacattttaactattttgaTCCATTATTAGCTTTATTTATTACTTGCTGCAGATGACACCCTTatcctttttattgtttttttgttgttgtatctTCATTTTACTAAATGGCAACTCtgctttttgtctttcttttcctccaAACTGTTTTATCAAATCAAAGTGGTTCAAAACCTACACCTTAAACACTGGTGCTTGATACACTGTGAAGTGAAACCAACTTGGAACAGTTACAAGTCTGGGACTGTCCCTCATACAATAAGATAAAGTGCTAAAACCCAGAAGCTATTATGCTTACCGTTGCTGTCTTTGCTTAATCTATTTTTGACATGCATATGAACAGGTTGTGtagaatattttttacaaataatacaaacaaatcctTGAGGGGTG

Function

symbol description
rybpb Predicted to enable DNA binding activity and transcription coregulator activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within apoptotic process and positive regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human RYBP (RING1 and YY1 binding protein).
rybp Predicted to enable DNA binding activity and transcription coregulator activity. Involved in several processes, including histone H2A monoubiquitination; negative regulation of proteasomal ubiquitin-dependent protein catabolic process; and positive regulation of transcription, DNA-templated. Located in nucleoplasm. Colocalizes with PcG protein complex.

NR:

description
PREDICTED: RING1 and YY1-binding protein

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11469 RYBP; RING1 and YY1-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017117 True 1338 mRNA 0.42 3 46506327 46508536

Neighbor

gene id symbol gene type direction distance location
AMCG00017120 NA coding upstream 86485 46416397 ~ 46419842 (+)
AMCG00017121 NA coding upstream 90971 46413402 ~ 46415356 (+)
AMCG00017114 pdzrn3 coding upstream 178614 46312894 ~ 46327713 (+)
AMCG00017112 pdzrn3,LOC107584480,LOC107667029,LOC107680714,LOC106582849 coding upstream 261061 46229049 ~ 46245266 (+)
AMCG00017113 NA coding upstream 409401 45943050 ~ 46096926 (+)
AMCG00017119 NA coding downstream 91224 46599760 ~ 46600717 (+)
AMCG00017118 eif4e3,LOC107727004,LOC107681400,LOC107666244,LOC107568047,LOC107705706 coding downstream 102180 46610716 ~ 46621777 (+)
AMCG00017123 NA coding downstream 263939 46772475 ~ 46808666 (+)
AMCG00017124 NA coding downstream 345392 46853928 ~ 46892467 (+)
AMCG00017131 NA coding downstream 498599 47007135 ~ 47036741 (+)
G18386 NA non-coding upstream 133921 46371967 ~ 46372406 (+)
G18365 NA non-coding upstream 399809 46105597 ~ 46106518 (+)
G18363 NA non-coding upstream 404704 46101066 ~ 46101623 (+)
G18357 NA non-coding upstream 484982 46019341 ~ 46021345 (+)
G18330 NA non-coding upstream 723860 45782197 ~ 45782467 (+)
G18420 NA non-coding downstream 55434 46563970 ~ 46564202 (+)
G18430 gpr27,LOC106582853,LOC107713489,LOC107599437,LOC106565734 non-coding downstream 96994 46605530 ~ 46608382 (+)
G18462 NA non-coding downstream 409810 46918346 ~ 46920546 (+)
G18464 NA non-coding downstream 422045 46930581 ~ 46930895 (+)
G18470 NA non-coding downstream 520251 47028787 ~ 47038523 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 1544726 44949034 ~ 44961601 (+)
G18192 NA other upstream 1850229 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 2368396 44126214 ~ 44137931 (+)
G17697 NA other upstream 4108540 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 7251837 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 2863486 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 2893995 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 3204931 49713467 ~ 49727567 (+)
G19113 NA other downstream 4043344 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 4050914 50559450 ~ 50563278 (+)

Expression


Co-expression Network