AMCG00017118 (eif4e3,LOC107727004,LOC107681400,LOC107666244,LOC107568047,LOC107705706)


Basic Information

Item Value
gene id AMCG00017118
gene name eif4e3,LOC107727004,LOC107681400,LOC107666244,LOC107568047,LOC107705706
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 46610716 ~ 46621777 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017118
ATGGCGGTTCCTGCAGCTCCCGACCTGCAGATCAACACAGAAACGCAGAGCAGCCCCGAGAATAACATCCATATCGACGAGAAAGAGTTTGAAAACCTGACGAGTGGCGCGGAGGACGGCACCGCGCTCCCCCTGCACTCTCCCTGGACTTTCTGGCTGGACAGGCGAGTCtcagtgtctttgtCATTACCTGGGACAACGGCAGCAGAGTGTGAATCCAATTTGAAAAAGATCTACACAGTGCAGACTGTACAGAGCTTTTGGAGTGTTTACAACAACATCCCATCCGTGACTGCTCTTCCCCTGAGGTGTAGTTATCACCTAATGCGCGGTGAAAGACGGCCTCTGTGggAAGAAGAAAGTAATGCAAAAGGTGGAGTTTGGAAGATGAAAGTCCCAAAAGACagcactGCTGCTGTTTGGAAAGAATTGTTACTTGCAACCATTGGAGAACAGTTTGCAGACTATTGTGCATCTGAAGATGAAGTAGTAGGAGTCAGTGTTAGTGTTCGAGATCGAGAAGATGTTGTTCAAGTCTGGAATGTAAATGCCTCTTTTGCAAGCGAAGCTAATATTTTAGGAAAAATCTACGAACTTCTCCCACACATATCCTTTAAAGCAGTATTTTATAAACCTCATGAGGAGCACCATGCTTTTGAAGGTGGCCGTTCAAGACATTAACCTTTTGCTAAACTTCTCCACACAAAAAATGGACTGGACTTCTCCCTGACTTAAACACTATTCTATAAATACAAAGTATTTCTCTTCAATTTAACATCAAAAATGTGGTAAAATATTATAAACCAGTATCTCGGCTAGCAAGTCATAAGAATAATGTTACATGCATATTTTAGAAAGTAAAGCTTAAATTTCCCCtcaagtgttttcttttttactccCCCAAACCCCCTTGCATTTTGGTTGGTTGGTAAGATCAAGAAAGCAAAAGATGTCAAACCTGAAGGTAAAGTAGTGGATGGTTTAATATGTTTACTATGAAATCGCTgctcttttcttccccccctccATTTATCAGTGTATTCACCTGCAGTTTACTGAAGAGAGGGTTTTGCTGGTTCCCAATGTGTAAGATGTTAACAAGGTGTTGTACTTTATCCTTTCAGACACTCTAAAAGTGCACACAAGTAACACTGCTTTTTCTAACTTGttcttttgctttgttctttaaATCCTTAATAATTTTGAGGCATTCCTAGAGATACAAAAATAGCAGAACTTTCTTGTTcatgtgggaaaaaaatatgcacTTATAGCTGCAGAACTTGCCATACGTTTAATTGTAGAAATGCACTGTACTGATTTTTACTGTCAGTTGCACGTGAACactgtagttttttgttttttaaattaggtTCTCAGTAATTGTATGCTGTGTTAAGAGTATGGTAATTCACTTTATTCTGTGTGTGGTGCCAATTGattgtacatgtttttcaatattatcTAGTCTGACCATGTATTGACCCATCCTGGTGTTAATGTCAATTGGAAATGACACTGTAAAGATGCAATATTTCAAACTATCATTGAGTTTTGATCCCAGGAAGGTGAATTTAGTTTAGGTGAGTTATCGCACATTTTAATGGTTAATCACTGCAGATAAACTTACTTGGTTCCTTGTTCTTTGCAGATGATCAGAAAGGCACATCACTTGATTTCTCCATGTTTATGTACACTTACTTATTTGAAGCTACACAGTAGCCTATAAATGGCACTGGCTTGACACCATTTTGCTAAGATtttacctttttatatatattttaaataccaaaATACTTTAAAACCTAAAGCCCTTGTATGGCATGCTGGCTTCAGATTCAAAGGCTATGCAGTAAATTAAGTAACATCTAGGTAATCTGTGTATTGTATGAAAATGTAAGATTTGCATGTAGGAGATCATATGTGTTAGTTGTTGTATTATGCACTTGGAAAATATGAACCAATTATTTTTGCTACACATAGAATAAATGGTTTACCTTTTGGGAAACTCACCTAAGATGATAACCTCTTTGTCCAAAATATGTATGTCATAATGGaggtagtttttgtttgttttcccctgcTTCCCTTTTGTTACATATTCTGCAACTGGAAGCTAATTCCTATTGTCTGCATTTCTAGTTTATTTACAGAATTTCCagtttccctttttgttttgactgagtttttcttttgtatttttagatacttgtattacaaataaaaacgtGATCAATACTTTTAAATGCTGAATTTGATAGTGATGTACTTCCAAATGCCTGTATTATACAAAATTATTGGCTAATTAGTACTTTCCATGACTGTAACCAAAGAGGTGATGTTTTACATGTTTGGTGATGAATGCTGCACGGGAGGACATGAATGTACACTTGTTTTGCCAAACTTGACTAGACCACCTGTCTAGTCCAGCAGGTGTATGTTCCTAAGCACAGCAGTAGGctggtttgcttttcttttctttttttttcttcctcacttatatatatatttaaaagatccacgtcattttaaatgcattgttacCATGAATGTTGCAGTAGCAATTAAGGTTAAGTTATGTGAGGCCTGCTCTTCTGTATCTCAGGTCTGTCAATGTGAAAATGCACTAAAGCACAACATTATCAacctatattttaaaatgcatacagttGGCACATAAAACGATACGTTAGGTATGTTCTAAATGCAGCAGTTGTTATATGAAACATTCTTTTACAGCGTGTAAAtggatggttttgtttttgttgtattggtTTGATATTAAACAGGGGTCCCAGTTTCTGTCTGAGACATCATGCTGGTTAAACTTATTTTACAGAATGGTGCCTTGTGTTCTTCCAGGGTTAAAACCTTCTAGAATGTGCTctgtttcaatttattttaattagttcttatgtatattaaatattttttttgcttgtaggttttgaaatattgaaaaataaactgtacaatttcattttggatgtactattttttttcacatgtcTTATGGCCATTTGACTGGAACCCGCCCCCCAAACCTTGTATTTAAGCATCTTCATGAACTTTACTGTGTATTAACAAAAATCAACTGGGAACCATAGCTTGATGTagtatatataatctatatttatatcCAACTGATAATTGTTAT

Function

symbol description
eif4e3 Predicted to enable RNA 7-methylguanosine cap binding activity and translation initiation factor activity. Predicted to act upstream of or within regulation of translation and translational initiation. Predicted to be part of eukaryotic translation initiation factor 4F complex and mRNA cap binding activity complex. Orthologous to human EIF4E3 (eukaryotic translation initiation factor 4E family member 3).

NR:

description
PREDICTED: eukaryotic translation initiation factor 4E type 3

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0006417 regulation of translation biological_process
GO:0005845 mRNA cap binding complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017118 True 3157 mRNA 0.36 7 46610716 46621777

Neighbor

gene id symbol gene type direction distance location
AMCG00017119 NA coding upstream 9999 46599760 ~ 46600717 (+)
AMCG00017117 rybp,rybpb,LOC107599415,LOC107732045,LOC107680715 coding upstream 102180 46506327 ~ 46508536 (+)
AMCG00017120 NA coding upstream 190874 46416397 ~ 46419842 (+)
AMCG00017121 NA coding upstream 195360 46413402 ~ 46415356 (+)
AMCG00017114 pdzrn3 coding upstream 283003 46312894 ~ 46327713 (+)
AMCG00017123 NA coding downstream 150698 46772475 ~ 46808666 (+)
AMCG00017124 NA coding downstream 232151 46853928 ~ 46892467 (+)
AMCG00017131 NA coding downstream 385358 47007135 ~ 47036741 (+)
AMCG00017127 lmod3,LOC102786770 coding downstream 419100 47040877 ~ 47044679 (+)
AMCG00017130 uba3,LOC108435248 coding downstream 430621 47052398 ~ 47060586 (+)
G18430 gpr27,LOC106582853,LOC107713489,LOC107599437,LOC106565734 non-coding upstream 2334 46605530 ~ 46608382 (+)
G18420 NA non-coding upstream 46514 46563970 ~ 46564202 (+)
G18386 NA non-coding upstream 238310 46371967 ~ 46372406 (+)
G18365 NA non-coding upstream 504198 46105597 ~ 46106518 (+)
G18363 NA non-coding upstream 509093 46101066 ~ 46101623 (+)
G18462 NA non-coding downstream 296569 46918346 ~ 46920546 (+)
G18464 NA non-coding downstream 308804 46930581 ~ 46930895 (+)
G18470 NA non-coding downstream 407010 47028787 ~ 47038523 (+)
G18538 NA non-coding downstream 857201 47478978 ~ 47479256 (+)
G18582 NA non-coding downstream 1232615 47854392 ~ 47854658 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 1649115 44949034 ~ 44961601 (+)
G18192 NA other upstream 1954618 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 2472785 44126214 ~ 44137931 (+)
G17697 NA other upstream 4212929 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 7356226 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 2750245 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 2780754 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 3091690 49713467 ~ 49727567 (+)
G19113 NA other downstream 3930103 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 3937673 50559450 ~ 50563278 (+)

Expression


Co-expression Network