AMCG00017120


Basic Information

Item Value
gene id AMCG00017120
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 46416397 ~ 46419842 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017120
ATGGAAGATCCTGAAGATGAAGATTTGGACTGGCAGATTGATCAGGAGGTGTATGTGGAGAGTACTGAGGAAGAACTTGGCAATCTTTATAAGTACGGTTTTGGAAACCAAAGGGCCGGCGTCTTCACCAGACTGCAGGATGAGCTGAGTGATGTCATCGATGTGAGGAGTCCAGATAGCACGAGCGCAGCCGGACGCAGAGAGGGCCGCCTGGCAGCCGAGAGCGCCAAGTTCGACCCTGACCATTACCTGTGA

Function

GO: NA

KEGG:

id description
K14764 SHQ1; protein SHQ1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017120 True 255 mRNA 0.53 2 46416397 46419842

Neighbor

gene id symbol gene type direction distance location
AMCG00017121 NA coding upstream 1041 46413402 ~ 46415356 (+)
AMCG00017114 pdzrn3 coding upstream 88684 46312894 ~ 46327713 (+)
AMCG00017112 pdzrn3,LOC107584480,LOC107667029,LOC107680714,LOC106582849 coding upstream 171131 46229049 ~ 46245266 (+)
AMCG00017113 NA coding upstream 319471 45943050 ~ 46096926 (+)
AMCG00017104 NA coding upstream 1188721 45220114 ~ 45227676 (+)
AMCG00017117 rybp,rybpb,LOC107599415,LOC107732045,LOC107680715 coding downstream 86485 46506327 ~ 46508536 (+)
AMCG00017119 NA coding downstream 179918 46599760 ~ 46600717 (+)
AMCG00017118 eif4e3,LOC107727004,LOC107681400,LOC107666244,LOC107568047,LOC107705706 coding downstream 190874 46610716 ~ 46621777 (+)
AMCG00017123 NA coding downstream 352633 46772475 ~ 46808666 (+)
AMCG00017124 NA coding downstream 434086 46853928 ~ 46892467 (+)
G18386 NA non-coding upstream 43991 46371967 ~ 46372406 (+)
G18365 NA non-coding upstream 309879 46105597 ~ 46106518 (+)
G18363 NA non-coding upstream 314774 46101066 ~ 46101623 (+)
G18357 NA non-coding upstream 395052 46019341 ~ 46021345 (+)
G18330 NA non-coding upstream 633930 45782197 ~ 45782467 (+)
G18420 NA non-coding downstream 144128 46563970 ~ 46564202 (+)
G18430 gpr27,LOC106582853,LOC107713489,LOC107599437,LOC106565734 non-coding downstream 185688 46605530 ~ 46608382 (+)
G18462 NA non-coding downstream 498504 46918346 ~ 46920546 (+)
G18464 NA non-coding downstream 510739 46930581 ~ 46930895 (+)
G18470 NA non-coding downstream 608945 47028787 ~ 47038523 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 1454796 44949034 ~ 44961601 (+)
G18192 NA other upstream 1760299 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 2278466 44126214 ~ 44137931 (+)
G17697 NA other upstream 4018610 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 7161907 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 2952180 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 2982689 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 3293625 49713467 ~ 49727567 (+)
G19113 NA other downstream 4132038 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 4139608 50559450 ~ 50563278 (+)

Expression


Co-expression Network