Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00017135 |
| gene name | suclg2,LOC106565836 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 47465171 ~ 47473829 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| suclg2 | Predicted to enable succinate-CoA ligase (GDP-forming) activity. Predicted to be involved in succinyl-CoA metabolic process and tricarboxylic acid cycle. Predicted to be part of succinate-CoA ligase complex. Predicted to be active in mitochondrion. Is expressed in lens; liver; pronephric duct; solid lens vesicle; and yolk syncytial layer. Orthologous to human SUCLG2 (succinate-CoA ligase GDP-forming subunit beta). |
| description |
|---|
| PREDICTED: succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0005524 | ATP binding | molecular_function |
| GO:0016874 | ligase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00017135 | True | 240 | mRNA | 0.50 | 3 | 47465171 | 47473829 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00017134 | suclg2 | coding | upstream | 36548 | 47387184 ~ 47428623 (+) |
| AMCG00017133 | NA | coding | upstream | 300929 | 47090369 ~ 47164242 (+) |
| AMCG00017129 | LOC107655985 | coding | upstream | 381653 | 47072719 ~ 47083518 (+) |
| AMCG00017128 | NA | coding | upstream | 392996 | 47061827 ~ 47072175 (+) |
| AMCG00017130 | uba3,LOC108435248 | coding | upstream | 404585 | 47052398 ~ 47060586 (+) |
| AMCG00017138 | NA | coding | downstream | 155287 | 47629116 ~ 47685872 (+) |
| AMCG00017140 | magi1,magi1b,LOC107728617,LOC107553826 | coding | downstream | 429853 | 47903682 ~ 47950784 (+) |
| AMCG00017142 | NA | coding | downstream | 538183 | 48012012 ~ 48062227 (+) |
| AMCG00017143 | NA | coding | downstream | 659789 | 48133618 ~ 48143478 (+) |
| AMCG00017144 | psmd6 | coding | downstream | 696467 | 48170296 ~ 48173353 (+) |
| G18470 | NA | non-coding | upstream | 426648 | 47028787 ~ 47038523 (+) |
| G18464 | NA | non-coding | upstream | 534276 | 46930581 ~ 46930895 (+) |
| G18462 | NA | non-coding | upstream | 544625 | 46918346 ~ 46920546 (+) |
| G18430 | gpr27,LOC106582853,LOC107713489,LOC107599437,LOC106565734 | non-coding | upstream | 856789 | 46605530 ~ 46608382 (+) |
| G18420 | NA | non-coding | upstream | 900969 | 46563970 ~ 46564202 (+) |
| G18538 | NA | non-coding | downstream | 5149 | 47478978 ~ 47479256 (+) |
| G18582 | NA | non-coding | downstream | 380563 | 47854392 ~ 47854658 (+) |
| G18607 | NA | non-coding | downstream | 588570 | 48062399 ~ 48065018 (+) |
| G18722 | NA | non-coding | downstream | 848434 | 48322263 ~ 48326805 (+) |
| G18791 | NA | non-coding | downstream | 1732979 | 49206808 ~ 49211256 (+) |
| AMCG00017099 | cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 | other | upstream | 2503570 | 44949034 ~ 44961601 (+) |
| G18192 | NA | other | upstream | 2809073 | 44654652 ~ 44656098 (+) |
| AMCG00017078 | LOC106565757 | other | upstream | 3327240 | 44126214 ~ 44137931 (+) |
| G17697 | NA | other | upstream | 5067384 | 42391297 ~ 42397787 (+) |
| AMCG00016979 | NA | other | upstream | 8210681 | 39239073 ~ 39254490 (+) |
| AMCG00017167 | NA | other | downstream | 1898193 | 49372022 ~ 49382218 (+) |
| AMCG00017173 | NA | other | downstream | 1928702 | 49402531 ~ 49403845 (+) |
| AMCG00017183 | NA | other | downstream | 2239638 | 49713467 ~ 49727567 (+) |
| G19113 | NA | other | downstream | 3078051 | 50551880 ~ 50552985 (+) |
| G19114 | raf1,LOC108276324 | other | downstream | 3085621 | 50559450 ~ 50563278 (+) |
