AMCG00017142


Basic Information

Item Value
gene id AMCG00017142
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 48012012 ~ 48062227 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017142
CCTGAGTCAAGCTGAGCTGGGAAACTCACCCACCAGTTGTCGGTGTGTAGGACCCTCTTTACATTATGCATGTTCACCAGAGATTGCGTGAGAGATTCCCGATAAAAACGCAAATCACCGATACCTACCCGATCACTTACGAGCCGACGAGAAAACAGCTGGATGAGGCGGTCTGGTTGACTGGGAAGTTTGGACTACAGCTCTGAGCCCGTTTGACTGAGGAGGGGGCACAAGGACTCCGGTAGTAAGGGGCTGCTGTCTGAAGTAAAGCGGACAATCATGCATCGTGTGTTTTGGGCACTGGGATTGCTAACCTCACTTTCAGACTTCTTGAATGTagcagcagcagacacagggaaCCCCATCAGAAATGCAACACCAGTAAAACGGCTGGAGCAGCTGAGCGTGGCTGAGATAGTGAATCCCACCCGAGTGAATGAAGCTGGTGACCCACTGCCCACCAGCATGCACTTCAAAAGGAGAAAGCGCAGTATTGATGAGAGTTCAGGCAGCCTTTCTGATCCCTGGTCCTCTTCGGAGATCTACTACAGAATAAAGGCTTTTGGACAGGATTTCCACATCAACCTCACACCGGACTCGGGATTTATTGCACCTCTTTACACTGTCACGTTACTGGGAGTACCCGGCAGCAGTGAAAACCAAACGGGATTTTCACCAGACGAGGATGCAGAGGACACCGATCACAAGCACTGTTTTTACAAAGGACATGTCAACGCAAAGCCAGAACACACTGCGATCATCAGCCTCTGTTCGGGGCTGCTTGGCACATTCAGGTCTCCCGAAGGAGAATATTTTGTAGAACCTCTTCACAACCACAATGGAGAATACTATGAAGAAGAACACAACAAACCTCATCTTGTCTACAGAAAGGATGCTCCTCAGAAATCCCCATCAGGGGACAATAATACATGTGATATTTCAGgACACAAGCATAGACACAGAAGACATAAAggaaaattaaagaaaggaCATCCAGGCAGTATATTTTCAGATCTTGAGACTTTACAAGCTGGCATTTCAAGTCATTTTTCAGCAgcagaaaatacacaaaatgggAATGACACCACTGTCTCAGGACCCCACAGAAGATCAAAGCGCTTTCTGTCATACCCTCGTTTTGTCGAAGTCATGGTGGTCGCGGACAGCAAAATGGTTGAACATCATGGAAATAACCTTCAGCACTACATTCTCACATTAATGTCTATCgtgGCCTCTATTTATAAAGATCCAAGTATTGGAAATCTTATTAATGTTGTCATTGTGAAATTAGTTGTCATAAATAATGAACTGGAGGGTCCTGTAATCTCATTCAATGCACAGACCACTTTAAAGAACTTTTGCATATGGCAGCAAACCCAGAATAATCAAGATGAGAACCACCATTCTCATCACGACACTGCGATTCTCATAACAAGacaggATATTTGCAGAGCTCGTGATAAATGTGACACTTTAGGCTTAGCAGAATTAGGCACCGTCTGTGATGCATACAGGAGTTGTTCCATTAGTGAAGATAATGGATTAAGTACCGCTTTTACAATAGCCCATGAACTTGGTCATGTGTTTAACATGCCCCATGATGATAGTAACAAATGCAAAGAAGATGGAGTGAAAAACCAACAGCATGGTATGGCGAATGCTTGCTTGATGAGCCAGTATCTAGACCATATAATCTGCCTCAACAACTTCCAGGACGCATATACAATACACAGTGCCGACGACTTTGGTGCACAAGCCCAGAGGGGGCGCAGAAAGGATGCCGTACTCAACATATGCCATGGGCTGATGGCACAGAGTGTTCTTTGGGAAAGGACCTGTGGAGGAGGCATCAAAATTGCCGTCAGGGAGTGCAACAGACCTGTGCCAAGAAACGGGGGGAAATACTGCGTTGGGCGCAGAATGAAGTTCCGCTCCTGCAACTCTGAGCCTTGTTCCAAGCAGAAGAAAGACTTCAGGGAGGAACAGTGTGCAGCATTTGACGGAAGGCATTTTAACATTAATGGTCTACCTCCAAATGTGCGTTGGGTTCCCAAGTACAGCGGAATTTTAATGAAAGACCGCTGCAAGCTTTTTTGCAGAGTTGCAGGAAGCACTGCCTATTACCAGCTCAGGGACAGAGTTATTGATGGCACCCCTTGTGGGCCAGATACTAATGACATTTGCGTCCAGGGATATAACGTTGTTGTACATATTCCTAGTGGTGCTACAAACATTGATGTGCGACAACACAGCTACTCAGGGAAACCAGAAGATGACAACTACCTTGCAATTTCCAACAGTCATGGAGAATACCTGCTTAACGGGGATTTTGTCGTAAGCATgtttaaaagggaaattaaagtAGGAAATGCTGTAATAGAGTACAGTGGCTCTGACCATGTCGTTGAAAGAATCAACTGTACAGACCGCATTGAGGAAGAAATTGTAGTTCAGGTTTTATCAGTGGGTAATTTATACAACCCTGATGTAAGGTACACATTCAATATTCCGATTGAAGACAAACCGCAACAGTTCTTTTGGGATGCTTACGGCCCCTGGCAGGAGTGCAGCAGGCTCTGCCAAGGGGAGCGCAAGAGAAAAGTTATCTGCAACAGAGAGTCTGACCGTGTGGTTGTTTCTGATCAAAGATGTCACGGTTCTCCACGGCCATCGGTGATAACTGAGCCATGCAATACAGAATGTGAACTCAGGTGGCACATAGCAAGGAAAAGTGAGTGCACAGTACAATGTGGTCTGGGCTACAGGACTCTAGAAATTTATTGTGCCAAGCATATGCGGTCAGAGGGCAAAACGGAGAAAGTTGATGACCGGTACTGTAGCAATCAACGCAAACCAGATGACAAAGAGGTGTGCCACGGAGATTGTAATCCGGGAGGCTGGGAATATGCCCCTTGGACAGAAtGCTCCAAAAGTTGTGGCGGTGGTACGAGACACAGAAGAGCCCTGTGTGGTAAATCTACAGAGACGGGTCACGACGAAAGCAAGTGCAGTCAGCGGGATAAACTGACTGTCCAGGCATGCAATGAATTCCTGTGCCCACAATGGAAAACCGGGGAATGGTCAGAATGCCTGGTGACCTGTGGTAAAGGATACAAACATCGTCAGACATGGTGTCAGTTTGGGGAGGACAGACTTGATGACAGATTTTGTGATTCTTCCAAACCTGAATCAGTACAGACATGCCAACAGCAGGAGTGTGCATCGTGGCAAGTCGGACCATGGGGCCAGTGTACCACCACATGTGGTCAGGGCTATCAAATGAGGGCAGTCAAATGTGTTGTGGGATCTTATGGGTCTGTGATGGACGATACTGAATGTAATGCAGCTACCAGGCCAACTGATACTCAGGATTGCGAAATAACAGCCTGTCCTGTTATGCATCCCGCTGTTCCAGAGACTAAAGTACCAACTCACGCTGGTCACAGAACCCAGTGGCGTTTTGGATCCTGGAcccagtgcagtgcaacaTGTGGTAAAGGCACCAGAATGCGCTATGTCAGCTGCAGGGACAATCAAGGCGGTGTTGCTGAGGAGTCTGCTTGCTCTCACCTTCCCAAACCACCTGCACGAGAAGTGTGCTCTGTTATATCTTGTGGACAGTGGAAAGTACTGGAGTGGACTTTGTGCTCGGTGACTTGTGGTCAGGGGAAAGCCACCAGGCAGGTGGTGTGTGTGAATTTCAGCGAGCAGGTTGTTGACGTCAGCGAATGTGATCCAGATGATCGTCCAGCAACCGAACAGGACTGTGCCATGTCCCAGTGTCCCTCACGCTCCACTGATCACGGGAGGTTTCCCTCGAATGTAGATTTGCGAATAAAGGTGCCTTCACCAGGGAATTCCATCCGTAACGCCGGCCGGGGGCAGACACATGGATCTCACCAGTGGAGAACAGGACCCTGGGGGGCCTGTTCAAGTACTTGTGCTGGGGGATTCCAGAGACGGGTAGTTGTTTGTCAAGATGAGAATGGATATGCAGCTAATAACTGTGATGAGAGGACAAAACCCATTGAGCAGCGATCTTGTGAATCTGGACCCTGTCCTCAGTGGGCTTATGGTAACTGGGGAGAGTGTACGAAGCCCTGTGGCGGTGGAATAAAGACCAGGCTGGTTGTGTGTCAGAGGCCCAATGGGGAACGTTTTAATGATCTGAGCTGTGAAATTCTTGACAAACCTCCAGATCGAGAGCAGTGCAATACACAAGCTTGTTCTTCAGATCCTCACTGGAACGCCAATCCTTGGAGTTTGtGCTCTGTATCTTGTGGGAAAGGATACAAATACCGCAGAGTTGTTTGCATGAGCAAATCTGGGAAACCTGTACCGGAGGAGAGCTGTAAACATCTGGCCAAACCAAGCAAGCAAAGGCGGTGCCGAGGGGGGCGGTGTCCAAAATGGAAAACGGAAATTTGGGGACAGTGCTCCTCATCGTGTGGGAGAGGCGTTCAGCAGAGAGAGGTTTTTTGCCAGGTTGGGAACCAGAGGAGCTCAGAGGAGTCGGAGTGCCAGCAATCTGCCAAACCGCTGAGCACGCAGCCCTGTCAGGCTGCCGACTGCCCCTCTGTCTACAGGTGGAGCGAGGAAGAGTGGCGAGAATGCAGTCAAAGCTGTGGCTCTGGAAGCAGAGAGCGAAAGGTTGTTTGTCTAAATCAGAACAAGGAGGAGGTTCACGAGACATACTGCAATTCACAAAACAAACCTCTTGATATCGAAAGTTGTAACACTCATCCATGTGAGTTCATCTGGATCACTGGGGAATGGTCAGAGTGTTCGGTGAGCTGTGGCCAGGGGTACCAGAGAAGACTGGTCTCCTGCAGTGACGTGCACAGTGGGAAGGACAATTATGAATATGGGTATCAGCCATCCATCAGCTGTCCGGGCCCGCCACCAGCCAACCTTCAAGACTGCAATCCTGTGCGCTGCCCTGCTACACAGTCCTGGAGAGTGGGCAACTGGGGACCTTGTTCTGCAACCTGCGGAGAAGGTGTGACAGAAAGGACAGTTCAGTGTTTGACCACTGATGGCAAGAACAGCGATGAGTGTCCACCAAGCGGGAAGCCAGAGGACACGAAAGTGTGCCGACTCCTGGCCTGTGAGTTCCCTAGAAACTGCCGAGATTTACAAAGACTGAGTGGTGTTACTGAAGACGGGGAGCAGCTTCTCGATGTACAAGGAAAAGCCCTTCAGaTTTACTGTGCTGGAATGCATTCCGACAGTCCAAGGGAGTATTTAACGTTGCTGTCAGGTGACACCGAGAATTTCTCTGAAGTCTTTGGTTTTAGGCTCAATAATCCCACAGAGTGCCCGTATAATGGAAGCCGGCGGGAAGATTGCCACTGCAGGAGAGATTACACTGCGGCTGGTCTCTCTACGTTCAGTAAAGTGAGACTGGATCTCAGCAAAATGCTCATAATAAccaCAGACTGGCAGTTTGCATTTACCCATGAAGGTCATCATGTCCCATTCGCAACAGCTGGGGACTGTTATAGTGCGGCCAGGTGTCCACAGGGTCGTTTCAGCGTTAACCTGGCAGGGACAGGATTTCAAATAGCCGAAGAAACCAAATGGATTTCCCAAGGAAACTATGCCGTGGCTGACATACATAAATCACAGGATGGCAGAAAAGTGACAGGAAAATGTGGGGGGTACTGTGGAAAATGCACACCATCGTCGGGCTTGGGCTTCCAAATTAAAGTGCTGTGCTTCTCAAGTGGCAAAAATCTTCCAGAGGTGCTACCATTCGAAGACTTCTAAATTACCTctactgtgtgcagtgtgtacataTAGTGAATGAGCAGggtgtaaatattgtatattattaaatttatttattttatttacatatatttttttatgtcatg

Function

GO: NA

KEGG:

id description
K08624 ADAMTS9; a disintegrin and metalloproteinase with thrombospondin motifs 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017142 True 5876 mRNA 0.48 39 48012012 48062227

Neighbor

gene id symbol gene type direction distance location
AMCG00017140 magi1,magi1b,LOC107728617,LOC107553826 coding upstream 61228 47903682 ~ 47950784 (+)
AMCG00017138 NA coding upstream 326140 47629116 ~ 47685872 (+)
AMCG00017135 suclg2,LOC106565836 coding upstream 538183 47465171 ~ 47473829 (+)
AMCG00017134 suclg2 coding upstream 583389 47387184 ~ 47428623 (+)
AMCG00017133 NA coding upstream 847770 47090369 ~ 47164242 (+)
AMCG00017143 NA coding downstream 71391 48133618 ~ 48143478 (+)
AMCG00017144 psmd6 coding downstream 108069 48170296 ~ 48173353 (+)
AMCG00017147 thoc7 coding downstream 150426 48212653 ~ 48216163 (+)
AMCG00017154 NA coding downstream 290169 48352396 ~ 48352746 (+)
AMCG00017156 cadps,LOC106582941,LOC106565849 coding downstream 299121 48361348 ~ 48447697 (+)
G18582 NA non-coding upstream 157354 47854392 ~ 47854658 (+)
G18538 NA non-coding upstream 532756 47478978 ~ 47479256 (+)
G18470 NA non-coding upstream 973489 47028787 ~ 47038523 (+)
G18464 NA non-coding upstream 1081117 46930581 ~ 46930895 (+)
G18462 NA non-coding upstream 1091466 46918346 ~ 46920546 (+)
G18607 NA non-coding downstream 172 48062399 ~ 48065018 (+)
G18722 NA non-coding downstream 260036 48322263 ~ 48326805 (+)
G18791 NA non-coding downstream 1144581 49206808 ~ 49211256 (+)
G18865 NA non-coding downstream 1374037 49436264 ~ 49493349 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding downstream 1520037 49582264 ~ 49670289 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 3050411 44949034 ~ 44961601 (+)
G18192 NA other upstream 3355914 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 3874081 44126214 ~ 44137931 (+)
G17697 NA other upstream 5614225 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 8757522 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 1309795 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 1340304 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 1651240 49713467 ~ 49727567 (+)
G19113 NA other downstream 2489653 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 2497223 50559450 ~ 50563278 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003397 adamts9 coding NC_007122.7 CM002895.2 19157879 ~ 19227802 (+)
grasscarp (Ctenopharyngodon idella) CI01000058_04100253_04135812 ADAMTS9 coding CI01000058 null 4099713 ~ 4136508 (-)