Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00017144 |
| gene name | psmd6 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 48170296 ~ 48173353 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| psmd6 | Predicted to enable enzyme regulator activity. Acts upstream of or within lens fiber cell differentiation and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of proteasome regulatory particle. Is expressed in ciliary marginal zone; head; and lens epithelium. Orthologous to human PSMD6 (proteasome 26S subunit, non-ATPase 6). |
| description |
|---|
| 26S proteasome non-ATPase regulatory subunit 6 |
| id | name | namespace |
|---|---|---|
| GO:0070306 | lens fiber cell differentiation | biological_process |
| GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | biological_process |
| id | description |
|---|---|
| K03037 | PSMD6, RPN7; 26S proteasome regulatory subunit N7 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00017144 | True | 1170 | mRNA | 0.49 | 8 | 48170296 | 48173353 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00017143 | NA | coding | upstream | 26818 | 48133618 ~ 48143478 (+) |
| AMCG00017142 | NA | coding | upstream | 108069 | 48012012 ~ 48062227 (+) |
| AMCG00017140 | magi1,magi1b,LOC107728617,LOC107553826 | coding | upstream | 219512 | 47903682 ~ 47950784 (+) |
| AMCG00017138 | NA | coding | upstream | 484424 | 47629116 ~ 47685872 (+) |
| AMCG00017135 | suclg2,LOC106565836 | coding | upstream | 696467 | 47465171 ~ 47473829 (+) |
| AMCG00017147 | thoc7 | coding | downstream | 39300 | 48212653 ~ 48216163 (+) |
| AMCG00017154 | NA | coding | downstream | 179043 | 48352396 ~ 48352746 (+) |
| AMCG00017156 | cadps,LOC106582941,LOC106565849 | coding | downstream | 187995 | 48361348 ~ 48447697 (+) |
| AMCG00017155 | LOC108271493 | coding | downstream | 282142 | 48455495 ~ 48460635 (+) |
| AMCG00017157 | NA | coding | downstream | 302015 | 48475368 ~ 48476484 (+) |
| G18607 | NA | non-coding | upstream | 105278 | 48062399 ~ 48065018 (+) |
| G18582 | NA | non-coding | upstream | 315638 | 47854392 ~ 47854658 (+) |
| G18538 | NA | non-coding | upstream | 691040 | 47478978 ~ 47479256 (+) |
| G18470 | NA | non-coding | upstream | 1131773 | 47028787 ~ 47038523 (+) |
| G18464 | NA | non-coding | upstream | 1239401 | 46930581 ~ 46930895 (+) |
| G18722 | NA | non-coding | downstream | 148910 | 48322263 ~ 48326805 (+) |
| G18791 | NA | non-coding | downstream | 1033455 | 49206808 ~ 49211256 (+) |
| G18865 | NA | non-coding | downstream | 1262911 | 49436264 ~ 49493349 (+) |
| G18908 | alas1,LOC106566237,LOC103399559 | non-coding | downstream | 1408911 | 49582264 ~ 49670289 (+) |
| G18909 | NA | non-coding | downstream | 1499732 | 49673085 ~ 49673926 (+) |
| AMCG00017099 | cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 | other | upstream | 3208695 | 44949034 ~ 44961601 (+) |
| G18192 | NA | other | upstream | 3514198 | 44654652 ~ 44656098 (+) |
| AMCG00017078 | LOC106565757 | other | upstream | 4032365 | 44126214 ~ 44137931 (+) |
| G17697 | NA | other | upstream | 5772509 | 42391297 ~ 42397787 (+) |
| AMCG00016979 | NA | other | upstream | 8915806 | 39239073 ~ 39254490 (+) |
| AMCG00017167 | NA | other | downstream | 1198669 | 49372022 ~ 49382218 (+) |
| AMCG00017173 | NA | other | downstream | 1229178 | 49402531 ~ 49403845 (+) |
| AMCG00017183 | NA | other | downstream | 1540114 | 49713467 ~ 49727567 (+) |
| G19113 | NA | other | downstream | 2378527 | 50551880 ~ 50552985 (+) |
| G19114 | raf1,LOC108276324 | other | downstream | 2386097 | 50559450 ~ 50563278 (+) |
